Guide to the Human Genome
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Name: LOC100291988 Sequence: fasta or formatted (120aa) NCBI GI: 239755246
Description:

PREDICTED: hypothetical protein XP_002344510

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         12           2
 C cysteine            0.8          1           1
 D aspartate           1.7          2           1
 E glutamate           5.0          6           1
 F phenylalanine       3.3          4           1
 G glycine             7.5          9           2
 H histidine           0.8          1           1
 I isoleucine          2.5          3           1
 K lysine              5.8          7           1
 L leucine             7.5          9           1
 M methionine          0.8          1           1
 N asparagine          1.7          2           1
 P proline            10.8         13           3
 Q glutamine           2.5          3           1
 R arginine           14.2         17           3
 S serine             16.7         20           3
 T threonine           3.3          4           1
 V valine              1.7          2           1
 W tryptophan          2.5          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344510 
LOC100287942          1.000   PREDICTED: hypothetical protein 
LOC100287942          1.000   PREDICTED: hypothetical protein XP_002343005 
CHD3                  0.046   chromodomain helicase DNA binding protein 3 isoform...
BCL11A                0.041   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.041   B-cell CLL/lymphoma 11A isoform 2 
ZNF280D               0.041   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.041   suppressor of hairy wing homolog 4 isoform 1 
LOC100291356          0.041   PREDICTED: hypothetical protein XP_002347017 
LOC100286907          0.041   PREDICTED: hypothetical protein XP_002342878 
C2orf3                0.037   hypothetical protein LOC6936 
LOC100133756          0.032   PREDICTED: hypothetical protein, partial 
SHANK3                0.032   SH3 and multiple ankyrin repeat domains 3 
HELB                  0.032   helicase (DNA) B 
LOC100293059          0.032   PREDICTED: hypothetical protein 
LOC100290935          0.032   PREDICTED: hypothetical protein XP_002348161 
LOC100287291          0.032   PREDICTED: hypothetical protein XP_002343834 
LOC100293578          0.027   PREDICTED: hypothetical protein 
LOC100290886          0.027   PREDICTED: hypothetical protein XP_002346949 
LOC100288243          0.027   PREDICTED: hypothetical protein 
LOC100286960          0.027   PREDICTED: hypothetical protein XP_002342813 
LOC100288243          0.027   PREDICTED: hypothetical protein XP_002342233 
LOC100286960          0.027   PREDICTED: hypothetical protein 
FAM148B               0.027   nuclear localized factor 2 
LOC284889             0.027   PREDICTED: hypothetical protein 
LOC284889             0.027   PREDICTED: hypothetical protein 
LOC284889             0.027   PREDICTED: hypothetical protein 
ADAM15                0.027   a disintegrin and metalloproteinase domain 15 isofor...
MLLT6                 0.027   myeloid/lymphoid or mixed-lineage leukemia (trithora...
PITPNM1               0.027   phosphatidylinositol transfer protein, membrane-ass...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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