Guide to the Human Genome
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Name: LOC284889 Sequence: fasta or formatted (152aa) NCBI GI: 239752167
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {152aa} PREDICTED: hypothetical protein
alt mRNA {152aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         18           5
 C cysteine            3.3          5           1
 D aspartate           2.0          3           1
 E glutamate           5.3          8           2
 F phenylalanine       0.7          1           1
 G glycine             9.2         14           2
 H histidine           2.0          3           1
 I isoleucine          0.7          1           1
 K lysine              0.7          1           1
 L leucine             5.9          9           1
 M methionine          3.9          6           2
 N asparagine          2.0          3           1
 P proline            15.1         23           3
 Q glutamine           2.6          4           1
 R arginine            9.2         14           2
 S serine             12.5         19           2
 T threonine           6.6         10           2
 V valine              3.9          6           1
 W tryptophan          2.0          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284889             1.000   PREDICTED: hypothetical protein 
LOC284889             1.000   PREDICTED: hypothetical protein 
WIPF1                 0.061   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.061   WAS/WASL interacting protein family, member 1 
LOC100292845          0.057   PREDICTED: hypothetical protein 
LOC100289230          0.057   PREDICTED: hypothetical protein XP_002342600 
PRR12                 0.057   proline rich 12 
LOC100292143          0.054   PREDICTED: hypothetical protein 
LOC100132261          0.054   PREDICTED: similar to hCG2023245 
ZNF828                0.051   zinc finger protein 828 
GLTSCR1               0.051   glioma tumor suppressor candidate region gene 1 [Ho...
CD3EAP                0.047   CD3E antigen, epsilon polypeptide associated protein ...
HCN2                  0.047   hyperpolarization activated cyclic nucleotide-gated...
SF3B4                 0.047   splicing factor 3b, subunit 4 
FMN1                  0.047   formin 1 
SFPQ                  0.047   splicing factor proline/glutamine rich (polypyrimidin...
CRTC1                 0.044   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.044   mucoepidermoid carcinoma translocated 1 isoform 1 [...
KLF2                  0.044   Kruppel-like factor 
SMARCC2               0.044   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.044   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.044   SWI/SNF-related matrix-associated actin-dependent r...
FOXJ2                 0.044   forkhead box J2 
VASP                  0.044   vasodilator-stimulated phosphoprotein 
YLPM1                 0.044   YLP motif containing 1 
SOS2                  0.041   son of sevenless homolog 2 
WASL                  0.041   Wiskott-Aldrich syndrome gene-like protein 
MN1                   0.041   meningioma  1 
PRRT3                 0.041   proline-rich transmembrane protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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