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Search of human proteins with 239755184
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755184 PREDICTED: hypothetical protein [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755184 PREDICTED: hypothetical protein [Homo sapiens] 249 5e-67
gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo ... 249 5e-67
gi|239743948 PREDICTED: hypothetical protein XP_002342996 [Homo ... 249 5e-67
gi|119395764 NLR family, pyrin domain containing 3 isoform a [Ho... 32 0.12
gi|188536116 NLR family, pyrin domain containing 3 isoform c [Ho... 32 0.12
gi|188536002 NLR family, pyrin domain containing 3 isoform d [Ho... 32 0.12
gi|34878693 NLR family, pyrin domain containing 3 isoform a [Hom... 32 0.12
gi|34878690 NLR family, pyrin domain containing 3 isoform b [Hom... 32 0.12
gi|14249174 pleckstrin homology domain containing, family A (pho... 30 0.62
gi|7705684 pleckstrin homology domain containing, family A (phos... 30 0.62
gi|238550107 SET domain containing 6 isoform a [Homo sapiens] 29 1.1
gi|238550105 SET domain containing 6 isoform b [Homo sapiens] 29 1.1
gi|27437019 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|27437017 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|27437027 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|27437023 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|27437021 calcium/calmodulin-dependent protein kinase kinase 2... 29 1.1
gi|49087132 sal-like 2 [Homo sapiens] 28 1.8
gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 28 2.3
gi|239749959 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|239740722 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|55770878 neuronal pentraxin I precursor [Homo sapiens] 27 4.0
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 27 4.0
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 27 4.0
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 27 4.0
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 27 4.0
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 27 4.0
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 27 4.0
>gi|239755184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 249 bits (635), Expect = 5e-67
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP
Sbjct: 1 MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
Query: 61 REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF
Sbjct: 61 REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
Query: 121 LDHPK 125
LDHPK
Sbjct: 121 LDHPK 125
>gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo
sapiens]
Length = 125
Score = 249 bits (635), Expect = 5e-67
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP
Sbjct: 1 MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
Query: 61 REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF
Sbjct: 61 REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
Query: 121 LDHPK 125
LDHPK
Sbjct: 121 LDHPK 125
>gi|239743948 PREDICTED: hypothetical protein XP_002342996 [Homo
sapiens]
Length = 125
Score = 249 bits (635), Expect = 5e-67
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP
Sbjct: 1 MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
Query: 61 REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF
Sbjct: 61 REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
Query: 121 LDHPK 125
LDHPK
Sbjct: 121 LDHPK 125
>gi|119395764 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 32.0 bits (71), Expect = 0.12
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 64 GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
GAAG+ K + L+ +G+++Q +I RE SL +R+ G LI++ P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285
Query: 117 P 117
P
Sbjct: 286 P 286
>gi|188536116 NLR family, pyrin domain containing 3 isoform c [Homo
sapiens]
Length = 979
Score = 32.0 bits (71), Expect = 0.12
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 64 GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
GAAG+ K + L+ +G+++Q +I RE SL +R+ G LI++ P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285
Query: 117 P 117
P
Sbjct: 286 P 286
>gi|188536002 NLR family, pyrin domain containing 3 isoform d [Homo
sapiens]
Length = 979
Score = 32.0 bits (71), Expect = 0.12
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 64 GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
GAAG+ K + L+ +G+++Q +I RE SL +R+ G LI++ P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285
Query: 117 P 117
P
Sbjct: 286 P 286
>gi|34878693 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 32.0 bits (71), Expect = 0.12
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 64 GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
GAAG+ K + L+ +G+++Q +I RE SL +R+ G LI++ P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285
Query: 117 P 117
P
Sbjct: 286 P 286
>gi|34878690 NLR family, pyrin domain containing 3 isoform b [Homo
sapiens]
Length = 922
Score = 32.0 bits (71), Expect = 0.12
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 64 GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
GAAG+ K + L+ +G+++Q +I RE SL +R+ G LI++ P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285
Query: 117 P 117
P
Sbjct: 286 P 286
>gi|14249174 pleckstrin homology domain containing, family A
(phosphoinositide binding specific) member 8 [Homo
sapiens]
Length = 440
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 46 LQVLVLHQVLTEVDPREAGAAGVRKEAEEALVWLE 80
LQ +VLH+V EA A VR A EAL+WL+
Sbjct: 382 LQKIVLHEV-------EADVAQVRNSATEALLWLK 409
>gi|7705684 pleckstrin homology domain containing, family A
(phosphoinositide binding specific) member 9 [Homo
sapiens]
Length = 391
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 46 LQVLVLHQVLTEVDPREAGAAGVRKEAEEALVWLE 80
LQ +VLH+V EA A VR A EAL+WL+
Sbjct: 266 LQKIVLHEV-------EADVAQVRNSATEALLWLK 293
>gi|238550107 SET domain containing 6 isoform a [Homo sapiens]
Length = 473
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 58 VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
V REA G + EAE LV+ LE+ G + GRE+ L +E T TL +
Sbjct: 316 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 374
Query: 110 SKPS 113
P+
Sbjct: 375 CMPA 378
>gi|238550105 SET domain containing 6 isoform b [Homo sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 58 VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
V REA G + EAE LV+ LE+ G + GRE+ L +E T TL +
Sbjct: 292 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 350
Query: 110 SKPS 113
P+
Sbjct: 351 CMPA 354
>gi|27437019 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 4 [Homo sapiens]
Length = 498
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|27437017 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 2 [Homo sapiens]
Length = 541
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 1 [Homo sapiens]
Length = 588
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|27437027 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 2 [Homo sapiens]
Length = 541
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 3 [Homo sapiens]
Length = 545
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|27437023 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 6 [Homo sapiens]
Length = 490
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|27437021 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 5 [Homo sapiens]
Length = 533
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 45 GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
GL L +H V+TE +P A G+ + EA+ V L+ +GS + H+ GR+
Sbjct: 39 GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98
Query: 95 KSLAQERATGTL 106
SL QER+ G L
Sbjct: 99 LSL-QERSQGGL 109
>gi|49087132 sal-like 2 [Homo sapiens]
Length = 1007
Score = 28.1 bits (61), Expect = 1.8
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 65 AAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAFLDHP 124
A VR ++EEA E G+V G+E + E+ T +S P PPPP+ LD P
Sbjct: 795 AISVRGDSEEASGAEEEVGTVAAAATAGKEMD-SNEKTTQQ---SSLPPPPPPD-SLDQP 849
Query: 125 K 125
+
Sbjct: 850 Q 850
>gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo
sapiens]
Length = 1048
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 62 EAGAAGVR------KEAEEALVWLEVTGSVHQLHIPGREKSLAQ------ERATGTLILA 109
+A AGVR + EE W++ G ++ IP +KS+ Q E+ +
Sbjct: 127 KAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQAVRHSHEKPDSENVPP 186
Query: 110 SKPSPPPPEAFLDHPK 125
SK PP L P+
Sbjct: 187 SKHHQQPPHNSLPKPE 202
>gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 959
Score = 27.3 bits (59), Expect = 3.1
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 41 LLADGLQVLVLHQVLTEVDPREAGA-AGVRKE 71
LL DGL +LVLH L+ V P AGA AG ++E
Sbjct: 198 LLVDGL-LLVLHAPLSNVVPTWAGATAGTQRE 228
>gi|239740722 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 86 HQLH-----IPGREKSLAQERATGTLILASKPSPP-PPEA 119
H LH IPG + +E G L L +P PP PP+A
Sbjct: 89 HDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQA 128
>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
Length = 432
Score = 26.9 bits (58), Expect = 4.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 35 SSTRSHLLADGLQVLV---LHQVLTEVDPREAGAAGVRKEAEEALVWLEVTGSVHQ 87
SS++++ L D LQ + QVL+ V+ E G G R + EE + S+HQ
Sbjct: 155 SSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQ 210
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 71 EAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEA 119
E ++ L++T + ++ R ++R TL L P PPPP A
Sbjct: 167 ERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPA 215
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 26.9 bits (58), Expect = 4.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 38 RSHLLADGLQVLVLHQVLTEVDPREAGAAGVRKE--AEEALVWLEVTGSVHQLHIPGREK 95
R H L DGL ++ H + + P+ AGA R EE V + VH+L R
Sbjct: 1025 RLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDEEEAVRVAAAADVHELQRHRRLL 1084
Query: 96 SLAQERATG 104
++ A G
Sbjct: 1085 AVELHEADG 1093
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 26.9 bits (58), Expect = 4.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 38 RSHLLADGLQVLVLHQVLTEVDPREAGAAGVRKE--AEEALVWLEVTGSVHQLHIPGREK 95
R H L DGL ++ H + + P+ AGA R EE V + VH+L R
Sbjct: 1025 RLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDEEEAVRVAAAADVHELQRHRRLL 1084
Query: 96 SLAQERATG 104
++ A G
Sbjct: 1085 AVELHEADG 1093
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 26.9 bits (58), Expect = 4.0
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 31 LVRYSSTRSHLLADGLQVLVLHQVLTEVDPREAGAAGVRK--EAEEALVWLEVTGSVHQL 88
L Y R L A+ L + + T RE G +R+ EAE A +L TGSV +
Sbjct: 3637 LASYDYVRRRLTAEDLFEARIISLETYNLLRE-GTRSLREALEAESAWCYLYGTGSVAGV 3695
Query: 89 HIPGREKSLAQERATGTLILASK 111
++PG ++L+ +A +L+++
Sbjct: 3696 YLPGSRQTLSIYQALKKGLLSAE 3718
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 26.9 bits (58), Expect = 4.0
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 31 LVRYSSTRSHLLADGLQVLVLHQVLTEVDPREAGAAGVRK--EAEEALVWLEVTGSVHQL 88
L Y R L A+ L + + T RE G +R+ EAE A +L TGSV +
Sbjct: 3641 LASYDYVRRRLTAEDLFEARIISLETYNLLRE-GTRSLREALEAESAWCYLYGTGSVAGV 3699
Query: 89 HIPGREKSLAQERATGTLILASK 111
++PG ++L+ +A +L+++
Sbjct: 3700 YLPGSRQTLSIYQALKKGLLSAE 3722
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 26.9 bits (58), Expect = 4.0
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 31 LVRYSSTRSHLLADGLQVLVLHQVLTEVDPREAGAAGVRK--EAEEALVWLEVTGSVHQL 88
L Y R L A+ L + + T RE G +R+ EAE A +L TGSV +
Sbjct: 3637 LASYDYVRRRLTAEDLFEARIISLETYNLLRE-GTRSLREALEAESAWCYLYGTGSVAGV 3695
Query: 89 HIPGREKSLAQERATGTLILASK 111
++PG ++L+ +A +L+++
Sbjct: 3696 YLPGSRQTLSIYQALKKGLLSAE 3718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,335,195
Number of Sequences: 37866
Number of extensions: 210968
Number of successful extensions: 1027
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 58
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.