Guide to the Human Genome
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Name: SETD6 Sequence: fasta or formatted (449aa) NCBI GI: 238550105
Description:

SET domain containing 6 isoform b

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [473aa] SET domain containing 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         37           2
 C cysteine            1.6          7           1
 D aspartate           4.0         18           2
 E glutamate          10.2         46           4
 F phenylalanine       2.7         12           1
 G glycine             6.0         27           3
 H histidine           2.4         11           1
 I isoleucine          2.7         12           1
 K lysine              3.6         16           1
 L leucine            13.6         61           3
 M methionine          2.9         13           1
 N asparagine          2.9         13           1
 P proline             5.3         24           1
 Q glutamine           5.8         26           2
 R arginine            6.0         27           2
 S serine              4.9         22           1
 T threonine           4.9         22           3
 V valine              7.3         33           2
 W tryptophan          2.0          9           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET domain containing 6 isoform b 
SETD6                 0.985   SET domain containing 6 isoform a 
SETD3                 0.074   SET domain containing 3 isoform a 
SETD3                 0.032   SET domain containing 3 isoform b 
SETD4                 0.024   SET domain containing 4 isoform a 
SETD4                 0.024   SET domain containing 4 isoform c 
SMYD4                 0.009   SET and MYND domain containing 4 
ADAMTS18              0.007   ADAM metallopeptidase with thrombospondin type 1 mot...
SMYD2                 0.006   SET and MYND domain containing 2 
DNAI2                 0.006   dynein, axonemal, intermediate polypeptide 2 
IL2RB                 0.006   interleukin 2 receptor beta precursor 
CUL9                  0.006   p53-associated parkin-like cytoplasmic protein [Homo...
ADAMTS16              0.006   ADAM metallopeptidase with thrombospondin type 1 mo...
ISY1                  0.005   ISY1 splicing factor homolog 
MAP3K7IP2             0.005   mitogen-activated protein kinase kinase kinase 7 int...
ANKS1B                0.005   cajalin 2 isoform a 
LOC100292583          0.005   PREDICTED: hypothetical protein 
LOC100290672          0.005   PREDICTED: hypothetical protein XP_002347118 
LOC100289100          0.005   PREDICTED: hypothetical protein XP_002342996 
ACCS                  0.005   1-aminocyclopropane-1-carboxylate synthase homolog ...
ACCS                  0.005   1-aminocyclopropane-1-carboxylate synthase homolog [...
ARRDC2                0.005   arrestin domain containing 2 isoform 2 
ARRDC2                0.005   arrestin domain containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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