Guide to the Human Genome
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Name: SETD6 Sequence: fasta or formatted (473aa) NCBI GI: 238550107
Description:

SET domain containing 6 isoform a

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [449aa] SET domain containing 6 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         42           2
 C cysteine            1.5          7           1
 D aspartate           3.8         18           2
 E glutamate           9.9         47           4
 F phenylalanine       2.5         12           1
 G glycine             6.6         31           3
 H histidine           2.3         11           1
 I isoleucine          2.5         12           1
 K lysine              3.4         16           1
 L leucine            13.1         62           3
 M methionine          2.7         13           1
 N asparagine          2.7         13           1
 P proline             5.5         26           2
 Q glutamine           5.7         27           2
 R arginine            6.8         32           2
 S serine              5.1         24           1
 T threonine           5.1         24           3
 V valine              7.2         34           2
 W tryptophan          1.9          9           1
 Y tyrosine            2.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET domain containing 6 isoform a 
SETD6                 0.936   SET domain containing 6 isoform b 
SETD3                 0.070   SET domain containing 3 isoform a 
SETD3                 0.030   SET domain containing 3 isoform b 
SETD4                 0.023   SET domain containing 4 isoform a 
SETD4                 0.023   SET domain containing 4 isoform c 
SYNPO                 0.009   synaptopodin isoform A 
SMYD4                 0.009   SET and MYND domain containing 4 
LOC100131988          0.006   PREDICTED: hypothetical protein 
LOC100131988          0.006   PREDICTED: hypothetical protein 
LOC100131988          0.006   PREDICTED: hypothetical protein 
SMYD2                 0.005   SET and MYND domain containing 2 
LOC643355             0.005   PREDICTED: hypothetical protein 
LOC643355             0.005   PREDICTED: hypothetical protein 
LOC643355             0.005   PREDICTED: hypothetical protein 
DNAI2                 0.005   dynein, axonemal, intermediate polypeptide 2 
IL2RB                 0.005   interleukin 2 receptor beta precursor 
CUL9                  0.005   p53-associated parkin-like cytoplasmic protein [Homo...
ISY1                  0.004   ISY1 splicing factor homolog 
MAP3K7IP2             0.004   mitogen-activated protein kinase kinase kinase 7 int...
ANKS1B                0.004   cajalin 2 isoform a 
HERC1                 0.004   guanine nucleotide exchange factor p532 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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