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Search of human proteins with 239755146
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755146 PREDICTED: hypothetical protein [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755146 PREDICTED: hypothetical protein [Homo sapiens] 239 4e-64
gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo ... 237 2e-63
gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo ... 237 2e-63
gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo ... 38 0.002
gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo ... 38 0.002
gi|239741677 PREDICTED: hypothetical protein XP_002342280 [Homo ... 38 0.002
gi|239757298 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo ... 35 0.013
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo ... 35 0.013
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo ... 34 0.028
gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo ... 34 0.028
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 34 0.028
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.063
gi|10863889 squamous cell carcinoma antigen recognized by T cell... 32 0.14
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 32 0.14
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 32 0.14
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 31 0.18
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 30 0.31
gi|168229156 NFKB activating protein [Homo sapiens] 30 0.31
gi|169169660 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.31
gi|169169929 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 0.31
gi|38788274 bromodomain PHD finger transcription factor isoform ... 30 0.31
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 30 0.31
>gi|239755146 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 239 bits (609), Expect = 4e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR
Sbjct: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
Query: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPSSLYFLNFL 115
SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPSSLYFLNFL
Sbjct: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPSSLYFLNFL 115
>gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo
sapiens]
Length = 115
Score = 237 bits (604), Expect = 2e-63
Identities = 114/115 (99%), Positives = 114/115 (99%)
Query: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR
Sbjct: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
Query: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPSSLYFLNFL 115
SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEA PRAAAWSPSSLYFLNFL
Sbjct: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
>gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo
sapiens]
Length = 115
Score = 237 bits (604), Expect = 2e-63
Identities = 114/115 (99%), Positives = 114/115 (99%)
Query: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR
Sbjct: 1 MRSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRR 60
Query: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPSSLYFLNFL 115
SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEA PRAAAWSPSSLYFLNFL
Sbjct: 61 SGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEAPPRAAAWSPSSLYFLNFL 115
>gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo
sapiens]
Length = 180
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 2 RSHQARLKKTAACESAPCVRLH------RSGRRLSARAG--------QPGATEPPPYRDR 47
RS Q R K + + + H RSG R R G + T PP++
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPL 107
Query: 48 RSHSP-PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSP 106
S S A +PRR+GRW + W L PRV+ +P A+AW
Sbjct: 108 SSRSTRSATRSPRRTGRWLNT---------MPSWNVVRLCAMQPRVSRRTCAPLASAWKR 158
Query: 107 SS 108
S+
Sbjct: 159 SA 160
>gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo
sapiens]
Length = 180
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 2 RSHQARLKKTAACESAPCVRLH------RSGRRLSARAG--------QPGATEPPPYRDR 47
RS Q R K + + + H RSG R R G + T PP++
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPL 107
Query: 48 RSHSP-PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSP 106
S S A +PRR+GRW + W L PRV+ +P A+AW
Sbjct: 108 SSRSTRSATRSPRRTGRWLNT---------MPSWNVVRLCAMQPRVSRRTCAPLASAWKR 158
Query: 107 SS 108
S+
Sbjct: 159 SA 160
>gi|239741677 PREDICTED: hypothetical protein XP_002342280 [Homo
sapiens]
Length = 180
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 2 RSHQARLKKTAACESAPCVRLH------RSGRRLSARAG--------QPGATEPPPYRDR 47
RS Q R K + + + H RSG R R G + T PP++
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPL 107
Query: 48 RSHSP-PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSP 106
S S A +PRR+GRW + W L PRV+ +P A+AW
Sbjct: 108 SSRSTRSATRSPRRTGRWLNT---------MPSWNVVRLCAMQPRVSRRTCAPLASAWKR 158
Query: 107 SS 108
S+
Sbjct: 159 SA 160
>gi|239757298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 44 YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEASPR 100
+RD+R P +A R GRW S GG R RG L+ G+ E + + A R
Sbjct: 106 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 165
Query: 101 AAAWSPSSL 109
A A + S+L
Sbjct: 166 AQASARSAL 174
>gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo
sapiens]
Length = 260
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 44 YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEASPR 100
+RD+R P +A R GRW S GG R RG L+ G+ E + + A R
Sbjct: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
Query: 101 AAAWSPSSL 109
A A + S+L
Sbjct: 243 AQASARSAL 251
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 38 ATEPPPYRDRR-SHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
A PPP + R S SPP L+AP R PSL R RRR + +G
Sbjct: 275 ARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAG 322
>gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo
sapiens]
Length = 260
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 44 YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEASPR 100
+RD+R P +A R GRW S GG R RG L+ G+ E + + A R
Sbjct: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
Query: 101 AAAWSPSSL 109
A A + S+L
Sbjct: 243 AQASARSAL 251
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 38 ATEPPPYRDRR-SHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
A PPP + R S SPP L+AP R PSL R RRR + +G
Sbjct: 275 ARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAG 322
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 40 EPPPYRDRR-SHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
+PPP + R S SPP L+AP R PSL R RRR + +G
Sbjct: 183 KPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAG 228
>gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo
sapiens]
Length = 166
Score = 33.9 bits (76), Expect = 0.028
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 14 CESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALS----APRRSGRWPSLGG 69
C S RL R R SAR G+P +EP R+ PALS APR G+ G
Sbjct: 54 CCSVVAARLLRLTPRSSARRGRP-ESEPATNGTRQQGDLPALSAAAEAPREGGKEEG-AG 111
Query: 70 LRERGRRRLDWRASGLRERSPRVTL----GEASPRAAAWSPSSLYFLNF 114
RE G R RA G + P + G + RAAA + +L F
Sbjct: 112 AREAGAAR--GRARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEF 158
>gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo
sapiens]
Length = 166
Score = 33.9 bits (76), Expect = 0.028
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 14 CESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALS----APRRSGRWPSLGG 69
C S RL R R SAR G+P +EP R+ PALS APR G+ G
Sbjct: 54 CCSVVAARLLRLTPRSSARRGRP-ESEPATNGTRQQGDLPALSAAAEAPREGGKEEG-AG 111
Query: 70 LRERGRRRLDWRASGLRERSPRVTL----GEASPRAAAWSPSSLYFLNF 114
RE G R RA G + P + G + RAAA + +L F
Sbjct: 112 AREAGAAR--GRARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEF 158
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 33.9 bits (76), Expect = 0.028
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 25 SGRRLSARAGQPGATEPPP---------YRD-----------RRSHSPPALSAPRRSGR- 63
SG+R A G+PG+ PP RD R SP SAP GR
Sbjct: 317 SGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRG 376
Query: 64 WPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAA 102
+ GG R RRR R S +PR G PR A
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRSSASAPR-RRGRRRPRPA 414
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 6 ARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP 65
+R K+ S+ C R ++ + PG + SHSP +LS+ R P
Sbjct: 218 SRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHR-HSSGSSHSP-SLSSHYSDSRSP 275
Query: 66 SLGGLRER--GRRRLDWRASGLRERSPRVTLGEASPR 100
S + R GR+ R+SG R SP G SP+
Sbjct: 276 SRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQ 312
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.063
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 9 KKTAACESAPCVRLHRSGRRLS--ARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPS 66
++ + ++P R RS R S R T P R RS +PPA+ RS R P
Sbjct: 1979 RRRSRSRTSPVTR-RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRS-RTPL 2036
Query: 67 LGGLRERGRRRLDWRASGLRERSPRVTLGEAS 98
L R R R L R R R+PR G+ S
Sbjct: 2037 LPRKRSRSRSPLAIRRRS-RSRTPRTARGKRS 2067
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 16 SAPCVRLHRSG--RRLSARAGQPGA-TEPPPYRDRRSHSPPALSAPRRSGRWPS 66
S+PC + RR + + QP A + PP R R S SPP P++ + PS
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPP----PKQKSKTPS 831
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 21 RLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRER------G 74
R RS ++R T P P++ RS + PA RS R P + R R
Sbjct: 1838 RRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS-RTPLISRRRSRSRTSPVS 1896
Query: 75 RRRLDWRASGLRERS 89
RRR R S R RS
Sbjct: 1897 RRRSRSRTSVTRRRS 1911
>gi|10863889 squamous cell carcinoma antigen recognized by T cells
1 [Homo sapiens]
Length = 800
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 30 SARAGQPGATEPPP-YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLR 86
+A AG GATE PP +R+ + H R G S G R+R R R R SG R
Sbjct: 17 TAAAGTGGATEQPPRHREHKKHK------HRSGGSGGSGGERRKRSRERGGERGSGRR 68
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 23 HRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRA 82
HR RR R GQ G +E R R SHS + +SG S GG R+ +
Sbjct: 213 HREHRR---RDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASA----TS 265
Query: 83 SGLRERSPRVTLGEASPRAAAWSPSSLY 110
S R R + S ++ P S Y
Sbjct: 266 SSSSSRKDRDSKAHRSRTKSSKEPPSAY 293
Score = 26.6 bits (57), Expect = 4.5
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 2 RSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSP--------- 52
R +A +T + + P S + +A + TEP YR RRS SP
Sbjct: 274 RDSKAHRSRTKSSKEPP------SAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPV 327
Query: 53 ---PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPS 107
+ S R P+ GG RR + R RSP + + R SPS
Sbjct: 328 SHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPS 385
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 23 HRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRA 82
HR RR R GQ G +E R R SHS + +SG S GG R+ +
Sbjct: 213 HREHRR---RDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASA----TS 265
Query: 83 SGLRERSPRVTLGEASPRAAAWSPSSLY 110
S R R + S ++ P S Y
Sbjct: 266 SSSSSRKDRDSKAHRSRTKSSKEPPSAY 293
Score = 26.6 bits (57), Expect = 4.5
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 2 RSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSP--------- 52
R +A +T + + P S + +A + TEP YR RRS SP
Sbjct: 274 RDSKAHRSRTKSSKEPP------SAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPV 327
Query: 53 ---PALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRERSPRVTLGEASPRAAAWSPS 107
+ S R P+ GG RR + R RSP + + R SPS
Sbjct: 328 SHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPS 385
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 31.2 bits (69), Expect = 0.18
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 2 RSHQARLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRS 61
+ Q R ++++ E R HR R S + + P RDR P+ R
Sbjct: 505 KERQCRQSRSSSKE-----RDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQ 559
Query: 62 GRWPSLGGLRERGRRRLDWRASG-----------------LRERSPRVTLGEASPRAAA 103
R PS +ER RRR WR+ R RSP G + PRA++
Sbjct: 560 SRSPS----KERDRRR--WRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASS 612
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 31.2 bits (69), Expect = 0.18
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 7 RLKKTAACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDR------RSHSPPALSAPRR 60
R + A + P R R PGA P P R R SPP APRR
Sbjct: 148 RHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASPPPRPAPRR 207
Query: 61 SGRWPSL-GGLRERGRRR 77
P GG RGR R
Sbjct: 208 RSTAPRHEGGRPGRGRTR 225
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 21 RLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP 65
R+ RS RRL + +PG P RS A PR+SGRWP
Sbjct: 114 RVPRSSRRLPPESRRPGG--PAKTHPARS----ACCRPRKSGRWP 152
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 35 QPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASG 84
QPG PPP H PAL A G +L GL G D RASG
Sbjct: 221 QPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGL---GAAHPDLRASG 267
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 30.4 bits (67), Expect = 0.31
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 27 RRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLR 86
RR S+++ +P + P R RRS S + R+G LGGL +G R +R+
Sbjct: 21 RRSSSKSPKPSKSARSP-RGRRSRSHSCSRSGDRNGLTHQLGGL-SQGSRNQSYRSRSRS 78
Query: 87 ERSPRVTLGEASPRAAAWSPSSLYF 111
R + P A+A SS+Y+
Sbjct: 79 RSRERPSAPRGIPFASA--SSSVYY 101
>gi|169169660 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 30.4 bits (67), Expect = 0.31
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 28 RLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP-SLGGLRERGR-----RRLDWR 81
++SA A P P R+ H P P G+WP S G E R R L +
Sbjct: 108 QVSAPAATAPVASPAPARNPGLHYEPMCLRPWDGGKWPFSSTGQAELARVIGKLRYLSSK 167
Query: 82 ASGLRERSPRVTLGEASP 99
SG E LG P
Sbjct: 168 RSGTTEAGQEAVLGPLRP 185
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 30.4 bits (67), Expect = 0.31
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 14 CESAPCVRLHRSG----------RRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGR 63
C +AP + R G RRL A A P A P P + RR +P A+++ +G
Sbjct: 230 CPAAPGAQDPRRGKRAPRPPLRRRRLPAAASAP-APVPRPSQPRRPGTPEAVASRAVAGL 288
Query: 64 WPSL--GGLRERGRRRLDWRASGLRERSPRVTLG 95
P+L GGL E + SG RE + R G
Sbjct: 289 SPALPPGGLEEMA------QGSGGREGALRTPAG 316
>gi|169169929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 30.4 bits (67), Expect = 0.31
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 28 RLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWP-SLGGLRERGR-----RRLDWR 81
++SA A P P R+ H P P G+WP S G E R R L +
Sbjct: 108 QVSAPAATAPVASPAPARNPGLHYEPMCLRPWDGGKWPFSSTGQAELARVIGKLRYLSSK 167
Query: 82 ASGLRERSPRVTLGEASP 99
SG E LG P
Sbjct: 168 RSGTTEAGQEAVLGPLRP 185
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 30.4 bits (67), Expect = 0.31
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 29 LSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGL--RERGRRRLDWRASGLR 86
+ R G+P P +R + +PP P SG +GGL R RG R W A+
Sbjct: 1 MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSG---PIGGLRSRHRGSSRGRW-AAAQA 56
Query: 87 ERSPRVTLGEASPRAAAWS 105
E +P+ L +SPR + S
Sbjct: 57 EVAPKTRL--SSPRGGSSS 73
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 12 AACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGR 63
A E AP RL S R G +PPP +PP+ SAP R GR
Sbjct: 54 AQAEVAPKTRLS------SPRGGSSSRRKPPP----PPPAPPSTSAPGRGGR 95
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 30.4 bits (67), Expect = 0.31
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 29 LSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGL--RERGRRRLDWRASGLR 86
+ R G+P P +R + +PP P SG +GGL R RG R W A+
Sbjct: 1 MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSG---PIGGLRSRHRGSSRGRW-AAAQA 56
Query: 87 ERSPRVTLGEASPRAAAWS 105
E +P+ L +SPR + S
Sbjct: 57 EVAPKTRL--SSPRGGSSS 73
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 12 AACESAPCVRLHRSGRRLSARAGQPGATEPPPYRDRRSHSPPALSAPRRSGR 63
A E AP RL S R G +PPP +PP+ SAP R GR
Sbjct: 54 AQAEVAPKTRLS------SPRGGSSSRRKPPP----PPPAPPSTSAPGRGGR 95
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 36 PGATEPPPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGRR--RLDWRASGLRERSPRVT 93
PG +PP + + H+PP + P SG P R R +R D R R+ V
Sbjct: 594 PGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAVV 653
Query: 94 LGEAS 98
G S
Sbjct: 654 SGRRS 658
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,628,189
Number of Sequences: 37866
Number of extensions: 284555
Number of successful extensions: 1837
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 1715
Number of HSP's gapped (non-prelim): 255
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.