Guide to the Human Genome
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Name: LOC100290879 Sequence: fasta or formatted (166aa) NCBI GI: 239750652
Description:

PREDICTED: hypothetical protein XP_002347499

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            22.3         37           3
 C cysteine            1.2          2           2
 D aspartate           2.4          4           1
 E glutamate           7.2         12           2
 F phenylalanine       1.8          3           1
 G glycine            11.4         19           2
 H histidine           0.6          1           1
 I isoleucine          1.2          2           1
 K lysine              3.6          6           1
 L leucine             4.8          8           2
 M methionine          0.6          1           1
 N asparagine          1.8          3           1
 P proline            10.2         17           2
 Q glutamine           3.0          5           2
 R arginine           10.8         18           2
 S serine             10.2         17           2
 T threonine           3.0          5           1
 V valine              2.4          4           2
 W tryptophan          1.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347499 
LOC100286940          1.000   PREDICTED: hypothetical protein XP_002343317 
LOC100292508          0.915   PREDICTED: hypothetical protein 
SCAF1                 0.069   SR-related CTD-associated factor 1 
MARCKS                0.065   myristoylated alanine-rich protein kinase C substra...
TCOF1                 0.062   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.062   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.062   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.062   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.062   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.062   Treacher Collins-Franceschetti syndrome 1 isoform c ...
LOC643355             0.062   PREDICTED: hypothetical protein 
LOC643355             0.062   PREDICTED: hypothetical protein 
LOC100129036          0.059   PREDICTED: hypothetical protein 
LOC100287499          0.059   PREDICTED: hypothetical protein 
LOC100129036          0.059   PREDICTED: hypothetical protein 
LOC100287499          0.059   PREDICTED: hypothetical protein XP_002343643 
LOC100129036          0.059   PREDICTED: hypothetical protein 
TRIO                  0.056   triple functional domain (PTPRF interacting) 
FIZ1                  0.056   FLT3-interacting zinc finger 1 
OGFR                  0.049   opioid growth factor receptor 
HECW2                 0.049   HECT, C2 and WW domain containing E3 ubiquitin prote...
PAWR                  0.049   PRKC, apoptosis, WT1, regulator 
LOC100291624          0.049   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.049   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.049   PREDICTED: hypothetical protein XP_002342583 
LOC100292370          0.049   PREDICTED: hypothetical protein 
TAF4                  0.049   TBP-associated factor 4 
XYLT1                 0.046   xylosyltransferase I 
ARMCX2                0.046   ALEX2 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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