Guide to the Human Genome
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Search of human proteins with 239754854

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]           428   e-120
gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]           428   e-120
gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo ...   428   e-120
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi...    38   0.005
gi|4758128 doublecortin-like kinase 1 [Homo sapiens]                   35   0.035
gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo sap...    33   0.13 
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ...    33   0.13 
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           33   0.13 
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ...    33   0.13 
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           33   0.13 
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ...    33   0.13 
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           33   0.13 
gi|118498364 dapper 1 isoform 2 [Homo sapiens]                         33   0.17 
gi|24158478 dapper 1 isoform 1 [Homo sapiens]                          33   0.17 
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    33   0.17 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.17 
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ...    33   0.22 
gi|151301154 mucin 6, gastric [Homo sapiens]                           33   0.22 
gi|223633935 hypothetical protein LOC254427 [Homo sapiens]             32   0.29 
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H...    32   0.29 
gi|115334682 SNAP25-interacting protein [Homo sapiens]                 32   0.29 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         32   0.29 
gi|58532587 BTB (POZ) domain containing 7 isoform 1 [Homo sapiens]     32   0.38 
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ...    32   0.50 
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ...    32   0.50 
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    32   0.50 
gi|115511036 alpha-kinase 3 [Homo sapiens]                             32   0.50 
gi|222418647 mucin 7, secreted precursor [Homo sapiens]                31   0.65 
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]            31   0.65 
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]            31   0.65 

>gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score =  428 bits (1101), Expect = e-120
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
           MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK
Sbjct: 1   MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60

Query: 61  YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
           YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG
Sbjct: 61  YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120

Query: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
           FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS
Sbjct: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180

Query: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
           PSEEHSPVNRTQLPVLKAEALSKRSHLC
Sbjct: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208


>gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score =  428 bits (1101), Expect = e-120
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
           MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK
Sbjct: 1   MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60

Query: 61  YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
           YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG
Sbjct: 61  YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120

Query: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
           FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS
Sbjct: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180

Query: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
           PSEEHSPVNRTQLPVLKAEALSKRSHLC
Sbjct: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208


>gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo
           sapiens]
          Length = 208

 Score =  428 bits (1101), Expect = e-120
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
           MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK
Sbjct: 1   MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60

Query: 61  YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
           YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG
Sbjct: 61  YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120

Query: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
           FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS
Sbjct: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180

Query: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
           PSEEHSPVNRTQLPVLKAEALSKRSHLC
Sbjct: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208


>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
           sapiens]
          Length = 1692

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 132 PELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRT 191
           PE + G +      A PP SPR   A R      E +A GA+  T  + P+  H PV   
Sbjct: 405 PEGKAGKRAPAAARASPPDSPRAYSAERTA----ETRAPGAKQLTNHSPPAPRHGPV-PA 459

Query: 192 QLPVLKA-EALSKRSHL 207
           + P LKA E L K+S L
Sbjct: 460 EAPELKAQEPLRKQSRL 476


>gi|4758128 doublecortin-like kinase 1 [Homo sapiens]
          Length = 729

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 106 THTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGK 165
           T +PG  R + +P     V           G    TPR    P PSP +PG+ R+QR  +
Sbjct: 296 TKSPGPSRRSKSPASTSSVNGTP-------GSQLSTPRSGKSPSPSPTSPGSLRKQRSSQ 348

Query: 166 EGKARGAQTFTGTTSPSEEH 185
            G +  +   T   S  +E+
Sbjct: 349 HGGSSTSLASTKVCSSMDEN 368


>gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo
           sapiens]
          Length = 125

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 91  SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
           S+ A  ET+     P+ TP  C  ++  PG  + +     G  LR  +    R   +PPP
Sbjct: 22  SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL----RLCGLPPP 77

Query: 151 SPRTPGARRRQRR 163
               PGAR + RR
Sbjct: 78  RQERPGARWKLRR 90


>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
           sapiens]
          Length = 355

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 87  LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFA 146
           L  ++ A  S  +  P  P+   G+  C   P    + AR    G   R   +  P R  
Sbjct: 137 LTKYNSAHSSSRVPRPRLPSQRRGAS-CGLGPGPESRAARQGLGGRSARARTRRGPHRTR 195

Query: 147 VPPPSPRTPGARRR-QRRGKEGKARGAQTFTGTTSPS 182
            P P P   GAR+     G  G+ R A T +    P+
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPA 232


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 91  SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
           S A P+  L+   AP  T G  R     P   + + CA+ G  LR G  D  R  +  PP
Sbjct: 254 SPAPPAPELREGRAPGSTAGR-RPRPREPQAAEESGCATVG--LRRG--DCDRAGSSQPP 308

Query: 151 SPRTPG-----ARRRQRRGKEGKARGAQTFTGTTSP 181
           +    G      RRR+RRG  G+  G     G  SP
Sbjct: 309 ATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344


>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
           sapiens]
          Length = 355

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 87  LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFA 146
           L  ++ A  S  +  P  P+   G+  C   P    + AR    G   R   +  P R  
Sbjct: 137 LTKYNSAHSSSRVPRPRLPSQRRGAS-CGLGPGPESRAARQGLGGRSARARTRRGPHRTR 195

Query: 147 VPPPSPRTPGARRR-QRRGKEGKARGAQTFTGTTSPS 182
            P P P   GAR+     G  G+ R A T +    P+
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPA 232


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 91  SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
           S A P+  L+   AP  T G  R     P   + + CA+ G  LR G  D  R  +  PP
Sbjct: 254 SPAPPAPELREGRAPGSTAGR-RPRPREPQAAEESGCATVG--LRRG--DCDRAGSSQPP 308

Query: 151 SPRTPG-----ARRRQRRGKEGKARGAQTFTGTTSP 181
           +    G      RRR+RRG  G+  G     G  SP
Sbjct: 309 ATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344


>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
           sapiens]
          Length = 355

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 87  LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFA 146
           L  ++ A  S  +  P  P+   G+  C   P    + AR    G   R   +  P R  
Sbjct: 137 LTKYNSAHSSSRVPRPRLPSQRRGAS-CGLGPGPESRAARQGLGGRSARARTRRGPHRTR 195

Query: 147 VPPPSPRTPGARRR-QRRGKEGKARGAQTFTGTTSPS 182
            P P P   GAR+     G  G+ R A T +    P+
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPA 232


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 91  SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
           S A P+  L+   AP  T G  R     P   + + CA+ G  LR G  D  R  +  PP
Sbjct: 254 SPAPPAPELREGRAPGSTAGR-RPRPREPQAAEESGCATVG--LRRG--DCDRAGSSQPP 308

Query: 151 SPRTPG-----ARRRQRRGKEGKARGAQTFTGTTSP 181
           +    G      RRR+RRG  G+  G     G  SP
Sbjct: 309 ATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344


>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
          Length = 799

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 76  IPSIVKATLIPLQNW---SRAAPSETLQLPL---APTHTPGSCRCNSNP----PGFQKVA 125
           IPS+   T  P + W   S+A  +E+ ++PL    P+      +    P    P  Q+ A
Sbjct: 368 IPSLNNGTFSPPKQWSKESKAEQAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHA 427

Query: 126 RCASFG--------PELRG-GVKDTPRRFAVPPPSPRT--PGARRRQRRGKEGKARGAQT 174
           RC++ G         +L G   K++P R   PP   +   P  +  Q+   +G       
Sbjct: 428 RCSAIGTGESPKESAQLSGASPKESPSRGPAPPQENKVVQPLKKMSQKNSLQGVPPATPP 487

Query: 175 FTGTTSPSEE 184
              T  P EE
Sbjct: 488 LLSTAFPVEE 497


>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
          Length = 836

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 76  IPSIVKATLIPLQNW---SRAAPSETLQLPL---APTHTPGSCRCNSNP----PGFQKVA 125
           IPS+   T  P + W   S+A  +E+ ++PL    P+      +    P    P  Q+ A
Sbjct: 405 IPSLNNGTFSPPKQWSKESKAEQAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHA 464

Query: 126 RCASFG--------PELRG-GVKDTPRRFAVPPPSPRT--PGARRRQRRGKEGKARGAQT 174
           RC++ G         +L G   K++P R   PP   +   P  +  Q+   +G       
Sbjct: 465 RCSAIGTGESPKESAQLSGASPKESPSRGPAPPQENKVVQPLKKMSQKNSLQGVPPATPP 524

Query: 175 FTGTTSPSEE 184
              T  P EE
Sbjct: 525 LLSTAFPVEE 534


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 100 QLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARR 159
           +L ++P        C    P    +A  A+  P+   G  +TPR      P  +  G  R
Sbjct: 203 ELLISPDPQAAFQACERYLPDCDNLAPAATVAPQ---GEPETPR------PRRKGKGKGR 253

Query: 160 RQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLPVLKAE 199
           ++ RG++GK R       T+SP  + S  N+T   + K E
Sbjct: 254 KKGRGRKGKGRKKNKEIWTSSPPPD-SAENQTSTDIPKTE 292


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 86  PLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQ--KVARCASFGPELRGGVKDTPR 143
           P+   S A+P+     P +P   P S    S+PP  Q  KV+R AS  PE          
Sbjct: 390 PVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPE---------- 439

Query: 144 RFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLPVLKAEALSK 203
               P P+P  PG+ R        K R      G     + HS     ++   ++ A +K
Sbjct: 440 ---SPKPAP-APGSHREISSSPTSKNRS----HGRAKRDKSHSHTPSRRMGRSRSPATAK 491

Query: 204 R 204
           R
Sbjct: 492 R 492


>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
           sapiens]
          Length = 329

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 95  PSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDT--------PRRFA 146
           P + L+ P +P   P         PG        + G   R G+  T        PRR  
Sbjct: 197 PHQALKAPQSPRAFP------PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLT 250

Query: 147 VPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSP 181
           +P   PR   ARRR++R    + R A   +G   P
Sbjct: 251 LPEDHPRLANARRRRKRALATRVRPAPQTSGRPGP 285


>gi|151301154 mucin 6, gastric [Homo sapiens]
          Length = 2439

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 102  PLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTP--GARR 159
            P  P   PGS     N  G    ++   F  E    V   P     PP +P+ P  G+R 
Sbjct: 1163 PSQPQSVPGS-----NIEGCYNCSQDEYFDHEEGVCVPCMPPTTPQPPTTPQLPTTGSRP 1217

Query: 160  RQRRGKEGKARGAQTFTGT-TSPSEEHSPVNRTQLPVLKAEALSKR 204
             Q     G +      + T  SPS  H+P + TQ P+L A   S +
Sbjct: 1218 TQVWPMTGTSTTIGLLSSTGPSPSSNHTPASPTQTPLLPATLTSSK 1263


>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
          Length = 435

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 46/186 (24%)

Query: 41  SFCINGEAGIFIVGVEHNTKYFF----------FSDNLL---GVLKLLIPSIVKATLIPL 87
           SF ++ E+  ++   E +   FF          F + +L   GV  L  PS+ ++T  P 
Sbjct: 43  SFTLDDESLKYLTHEEKDVLLFFEETIDSLDEDFEEPVLCDGGVCCLCSPSLEESTSSPS 102

Query: 88  QNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTP----- 142
           +      P + + L + P   PG+      P G Q  A  A  G E R    +TP     
Sbjct: 103 E------PEDVIDL-VQPA--PGAGEAEGLPEGTQ-AAGPAPAGKEHRKQDAETPPPPDP 152

Query: 143 ---RRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRT-QLPVLKA 198
                   PPP P TP   RR+ R                SP  EH  + R+   P++ A
Sbjct: 153 PAPETLLAPPPLPSTPDPPRRELR--------------APSPPVEHPRLLRSVPTPLVMA 198

Query: 199 EALSKR 204
           + +S+R
Sbjct: 199 QKISER 204


>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
           sapiens]
          Length = 954

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 17/77 (22%)

Query: 88  QNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVK------DT 141
           + WS +AP+    L  +P HTP +       PGF  +     F     GG         T
Sbjct: 584 KQWSSSAPN----LGKSPKHTPIA-------PGFASLNEMEEFAEAEDGGSSVPPSPYST 632

Query: 142 PRRFAVPPPSPRTPGAR 158
           P   +VP P+  +PGAR
Sbjct: 633 PSYLSVPLPAEPSPGAR 649


>gi|115334682 SNAP25-interacting protein [Homo sapiens]
          Length = 1183

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 24/107 (22%)

Query: 123  KVARCASFGPELRGGVKDTPRRF-----------AVPPPSPRTPGARRRQR--------- 162
            +VAR AS  P +   +KD                +VPP    TPGA R +          
Sbjct: 1061 EVARPASTPPIMASAIKDEDDEDRIIAELESGGGSVPPMKVVTPGASRLKAAQGQAGSPD 1120

Query: 163  RGKEGKARGA----QTFTGTTSPSEEHSPVNRTQLPVLKAEALSKRS 205
            + K GK R      Q     T PS+E S  N T  PV +  + S+ S
Sbjct: 1121 KSKHGKQRAEYMRIQAQQQATKPSKEMSGSNETSSPVSEKPSASRTS 1167


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 19/61 (31%), Positives = 26/61 (42%)

Query: 142 PRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLPVLKAEAL 201
           PRR   PP   R+    RR+RR     +  + + + + S S    P  RT  P  K   L
Sbjct: 329 PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388

Query: 202 S 202
           S
Sbjct: 389 S 389



 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 108 TPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEG 167
           +P   R  ++PP   K     S  P+ R      P++ + P    R+P    + R+G   
Sbjct: 607 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSP 666

Query: 168 KARGAQTFTGTTSPSEEHSPVNRTQLP 194
                +    +  P++ HSP  R + P
Sbjct: 667 SRSTRE--ARSPQPNKRHSPSPRPRAP 691


>gi|58532587 BTB (POZ) domain containing 7 isoform 1 [Homo sapiens]
          Length = 1132

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 17/86 (19%)

Query: 87  LQNWSRAAPSETL--QLPLAPTHTPGSCRCNSNPPG---FQKVARCASFGPELRGGVKDT 141
           LQN  +  P E    + PL     PG CR NS PP    F  +    +F P L       
Sbjct: 706 LQNPHKFFPDERFGDESPLLTMRQPGRCRVNSTPPAETMFTDLDSFVAFHPPL------- 758

Query: 142 PRRFAVPPPSPRTPGARRRQRRGKEG 167
                 PPP P  P A     + K G
Sbjct: 759 -----PPPPPPYHPPATPIHNQLKAG 779


>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
           sapiens]
          Length = 459

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 109 PGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRF---AVPPPSPRTPGAR------- 158
           PGS    +  P  ++ +R A             P R    A PPP+PR P +R       
Sbjct: 173 PGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRL 232

Query: 159 --RRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP-VLKAE 199
             R ++R   G A  +  F+G  + S E  P +    P VL AE
Sbjct: 233 LSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAE 276


>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
           sapiens]
          Length = 459

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 109 PGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRF---AVPPPSPRTPGAR------- 158
           PGS    +  P  ++ +R A             P R    A PPP+PR P +R       
Sbjct: 173 PGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRL 232

Query: 159 --RRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP-VLKAE 199
             R ++R   G A  +  F+G  + S E  P +    P VL AE
Sbjct: 233 LSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAE 276


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 131 GPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNR 190
           GP ++G +   P   AVPPP+P TP        G    A GA T + + +P+   S +  
Sbjct: 376 GPTMQGAL---PSPAAVPPPAPGTP-------TGLPKGAAGAVTQSLSRTPTATTSGIRA 425

Query: 191 TQLPVLKAEAL 201
           T  P + A  L
Sbjct: 426 TLTPTVLAPRL 436


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 102 PLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGV---KDTPRRFAVPPPSPRTPGAR 158
           PLAP    G   C++   G ++  R    G   +G V   +DT   F   PP P     R
Sbjct: 52  PLAPARPRGPLICHT---GHEQAGREPGPGSSTKGPVLHDQDTRCAFLPRPPGPLQT-RR 107

Query: 159 RRQRRGKEGKARGAQTFTGTTSPS 182
             + +G++G   GA    GT +P+
Sbjct: 108 YCRHQGRQGSGLGAGPGAGTWAPA 131


>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 82  ATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDT 141
           ATL P+ +    AP +T   P  P+ T  +   +S PP         S   +        
Sbjct: 152 ATLAPVNS---PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAP 208

Query: 142 PRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP 194
           P   A PP  P T  A        E  A        T +P    +P   T +P
Sbjct: 209 PETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP 261


>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP 194
           R G     RR A+PPP  R+P AR     G        Q   G       HSP +    P
Sbjct: 75  RPGRAPGDRRAALPPPGTRSPFARAAAELGP-----SYQQIAGLRRRPVSHSPAHERPSP 129

Query: 195 VLKAEALSKRS 205
              A A ++ S
Sbjct: 130 ASSAAASARTS 140


>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP 194
           R G     RR A+PPP  R+P AR     G        Q   G       HSP +    P
Sbjct: 75  RPGRAPGDRRAALPPPGTRSPFARAAAELGP-----SYQQIAGLRRRPVSHSPAHERPSP 129

Query: 195 VLKAEALSKRS 205
              A A ++ S
Sbjct: 130 ASSAAASARTS 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,890,809
Number of Sequences: 37866
Number of extensions: 554872
Number of successful extensions: 2698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 249
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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