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Search of human proteins with 239754714
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754714 PREDICTED: hypothetical protein [Homo sapiens] 395 e-110
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ... 395 e-110
gi|239749263 PREDICTED: hypothetical protein [Homo sapiens] 392 e-109
gi|239509052 PREDICTED: hypothetical protein [Homo sapiens] 392 e-109
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 41 7e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 41 7e-04
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 39 0.002
gi|34486092 adenylate cyclase 5 [Homo sapiens] 38 0.006
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 36 0.023
gi|156938257 leucine rich repeat containing 16B [Homo sapiens] 36 0.023
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239748448 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 35 0.031
gi|239742390 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 35 0.031
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 35 0.040
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 35 0.040
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 35 0.040
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 35 0.040
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.040
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 35 0.040
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 35 0.052
gi|28559039 mediator complex subunit 1 [Homo sapiens] 35 0.052
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 35 0.052
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 35 0.052
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.052
gi|153792074 proline rich 12 [Homo sapiens] 35 0.052
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 34 0.068
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 34 0.089
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 34 0.089
>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 395 bits (1014), Expect = e-110
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
Query: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL
Sbjct: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
Query: 181 TKAGPGDGGSGQTP 194
TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194
>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
Length = 194
Score = 395 bits (1014), Expect = e-110
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
Query: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL
Sbjct: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
Query: 181 TKAGPGDGGSGQTP 194
TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194
>gi|239749263 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 392 bits (1007), Expect = e-109
Identities = 192/194 (98%), Positives = 193/194 (99%)
Query: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
Query: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
KAGDSGTGT+RKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG SPFRGSL
Sbjct: 121 KAGDSGTGTVRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGTSPFRGSL 180
Query: 181 TKAGPGDGGSGQTP 194
TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194
>gi|239509052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 392 bits (1007), Expect = e-109
Identities = 192/194 (98%), Positives = 193/194 (99%)
Query: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1 MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
Query: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61 QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
KAGDSGTGT+RKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG SPFRGSL
Sbjct: 121 KAGDSGTGTVRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGTSPFRGSL 180
Query: 181 TKAGPGDGGSGQTP 194
TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 20/125 (16%)
Query: 71 PALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTL 130
P P+ L+ P P S AAA+G + PP + S S + S +++ G G G
Sbjct: 224 PPAPAYALSSPRGGTPGSGAAAAAGSK----PPPSSSASASSSSSSFAQQRFGAMGGGG- 278
Query: 131 RKRVEGLGDGVLLPPAAPT-GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGG 189
G G P A PT TS S+ G Q G G GP DGG
Sbjct: 279 ---PSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSG-----------GPQDGG 324
Query: 190 SGQTP 194
+G+ P
Sbjct: 325 AGKGP 329
Score = 31.2 bits (69), Expect = 0.58
Identities = 40/167 (23%), Positives = 56/167 (33%), Gaps = 31/167 (18%)
Query: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
+P S A + S P P +++ASS SS + QR G P+ G +P+A+ L
Sbjct: 238 TPGSGAAAAAGSKP--PPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTL 295
Query: 88 SVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAA 147
+ + AR G + D G G +G D
Sbjct: 296 NQLLTSP----------SSARGYQGYPGGDYSGGPQDGGAG------KGPAD-------- 331
Query: 148 PTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQTP 194
S C A A A +A G + R PG G G P
Sbjct: 332 -----MASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQP 373
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 20/125 (16%)
Query: 71 PALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTL 130
P P+ L+ P P S AAA+G + PP + S S + S +++ G G G
Sbjct: 224 PPAPAYALSSPRGGTPGSGAAAAAGSK----PPPSSSASASSSSSSFAQQRFGAMGGGG- 278
Query: 131 RKRVEGLGDGVLLPPAAPT-GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGG 189
G G P A PT TS S+ G Q G G GP DGG
Sbjct: 279 ---PSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSG-----------GPQDGG 324
Query: 190 SGQTP 194
+G+ P
Sbjct: 325 AGKGP 329
Score = 31.2 bits (69), Expect = 0.58
Identities = 40/167 (23%), Positives = 56/167 (33%), Gaps = 31/167 (18%)
Query: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
+P S A + S P P +++ASS SS + QR G P+ G +P+A+ L
Sbjct: 238 TPGSGAAAAAGSKP--PPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTL 295
Query: 88 SVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAA 147
+ + AR G + D G G +G D
Sbjct: 296 NQLLTSP----------SSARGYQGYPGGDYSGGPQDGGAG------KGPAD-------- 331
Query: 148 PTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQTP 194
S C A A A +A G + R PG G G P
Sbjct: 332 -----MASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQP 373
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 68 PGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGT 127
P PA PS G R +AS P AS R P PP S + S +RE++G +G+
Sbjct: 285 PPHPAAPSGGRPRGAASPP----DLASSPRCPREPP-----SLAEAVYSVYRERSGVAGS 335
Query: 128 GTLRKRVEGLGDGVLLPPA---APTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAG 184
PA P + R ST SS +L SA P +G + G
Sbjct: 336 RRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSL---SAFALLPLQGGRDRGG 392
Query: 185 PGDGGS 190
+G S
Sbjct: 393 DAEGAS 398
>gi|34486092 adenylate cyclase 5 [Homo sapiens]
Length = 1261
Score = 37.7 bits (86), Expect = 0.006
Identities = 44/168 (26%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 44 PARGNSAASSFSSPSSLQRQHVGEPGEPALPSA----GLARPSASQPLSVRAAASGERRP 99
P G S++ S + PG A S G P Q L+ R + + P
Sbjct: 22 PRGGPEHRSAWGEADSRANGYPHAPGGSARGSTKKPGGAVTPQQQQRLASRWRSDDDDDP 81
Query: 100 HVP---PWDGARSRSWCAGSAWREKAGDS-GTGTLR-KRVEGLGDGVLLPPAAPTGFTRT 154
+ P G S+ + SAW+E+ GD G G+ R +R G PPA G +
Sbjct: 82 PLSGDDPLAGGFGFSFRSKSAWQERGGDDCGRGSRRQRRGAASGGSTRAPPAGGGGGSAA 141
Query: 155 STCSSMGAQALGAGSAPGASPFRGSLTKA------------GPGDGGS 190
+ S+ G + G RG A G GDGGS
Sbjct: 142 AAASAGGTEVRPRSVEVGLEERRGKGRAADELEAGAVEGGEGSGDGGS 189
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 35.8 bits (81), Expect = 0.023
Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 23/164 (14%)
Query: 36 GSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSAS----QPLSVRA 91
GS P +P R S +S +SS S G P LP GLA P AS QP
Sbjct: 566 GSRRPPRSPERTLSPSSGYSSQS----------GTPTLPPKGLAGPPASPGKAQPPKPER 615
Query: 92 AASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLP--PAAPT 149
S R P + S C+ S+ + SG L LGD ++P P P
Sbjct: 616 VTS-LRSPGASV--SSSLTSLCSSSSDPAPSDRSGPQILTP----LGDRFVIPPHPKVPA 668
Query: 150 GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQT 193
F+ + A A +AP P S T A P + QT
Sbjct: 669 PFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQT 712
Score = 27.7 bits (60), Expect = 6.4
Identities = 40/127 (31%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Query: 28 SPVSVTARGSFSSPSNP-ARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQP 86
SP SV + G FSS S+P R +SS + S Q L S G S QP
Sbjct: 386 SPASVRSLGRFSSVSSPQPRSRHPSSSSDTWSHSQSSDTIVSDGSTLSSKG---GSEGQP 442
Query: 87 LSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLL--- 143
S A+ S VPP G R +G + E S T ++R + G V L
Sbjct: 443 ESSTASNS-----VVPPPQGGSGRGSPSGGSTAEA---SDTLSIRSSGQLSGRSVSLRKL 494
Query: 144 --PPAAP 148
PP P
Sbjct: 495 KRPPPPP 501
>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
Length = 1372
Score = 35.8 bits (81), Expect = 0.023
Identities = 49/191 (25%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 21 FTYMGEHSPVSVTARGSFSSPSN-PARGNSAASSFSSPSSLQRQHVGEPGEPALPSAG-- 77
F+ +G P TA GS+ S P G R PG P++P+ G
Sbjct: 944 FSGLGGSQP---TASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSMPAPGTR 1000
Query: 78 --------------------LARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSA 117
+ S+S P ++R G +PP R R
Sbjct: 1001 QENGMATRLDEGLEDFFSRRVLEESSSYPRTLRTVRPGLSEAPLPPLQKKRRRGLFHFRR 1060
Query: 118 WREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFR 177
R GD G G+ G+LLPP P T+ S S +LG S+P SP
Sbjct: 1061 PRSFKGDRGPGSPT-------TGLLLPPPPPPPPTQESP-PSPDPPSLGNNSSPCWSPEE 1112
Query: 178 GSLTKAGPGDG 188
S G G G
Sbjct: 1113 ESSLLPGFGGG 1123
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 35.4 bits (80), Expect = 0.031
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 33 TARGSFSSPSNPARGNSAASSFSSPSSLQRQHVG--EPGEPALPSAG-------LARPSA 83
T RGS S+P PAR SA R G E GE P+ G +AR +A
Sbjct: 99 TRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAGGAEAGERRSPNRGATSSLSPIARGAA 158
Query: 84 S-QPLS-----VRAAASGERRPHVPPWDGARSRSWCAGSAW 118
+P S R A R +PP R+RSW G W
Sbjct: 159 DVRPFSWVGGLPRPPAPAALRLLLPPAPRRRARSWACGPGW 199
>gi|239748448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 35.4 bits (80), Expect = 0.031
Identities = 46/179 (25%), Positives = 63/179 (35%), Gaps = 34/179 (18%)
Query: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
+P + G + +P P RG + F+SP G P P LP A AR A+
Sbjct: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112
Query: 88 SVRAAASGERRPHVPPWD-----------GAR----SRSWCAGSAWREKAGDSGTGTLRK 132
A P V W GAR SR W G R
Sbjct: 113 VADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRW 172
Query: 133 RVEGLGDGVLLPPAAPTGFTRTS-TCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGS 190
+ LPPAA +T+ S +C + +A G G+ P + P G+GG+
Sbjct: 173 AGPASPN---LPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEGGA 221
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 35.4 bits (80), Expect = 0.031
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 33 TARGSFSSPSNPARGNSAASSFSSPSSLQRQHVG--EPGEPALPSAG-------LARPSA 83
T RGS S+P PAR SA R G E GE P+ G +AR +A
Sbjct: 99 TRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAGGAEAGERRSPNRGATSSLSPIARGAA 158
Query: 84 S-QPLS-----VRAAASGERRPHVPPWDGARSRSWCAGSAW 118
+P S R A R +PP R+RSW G W
Sbjct: 159 DVRPFSWVGGLPRPPAPAALRLLLPPAPRRRARSWACGPGW 199
>gi|239742390 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 35.4 bits (80), Expect = 0.031
Identities = 46/179 (25%), Positives = 63/179 (35%), Gaps = 34/179 (18%)
Query: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
+P + G + +P P RG + F+SP G P P LP A AR A+
Sbjct: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112
Query: 88 SVRAAASGERRPHVPPWD-----------GAR----SRSWCAGSAWREKAGDSGTGTLRK 132
A P V W GAR SR W G R
Sbjct: 113 VADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRW 172
Query: 133 RVEGLGDGVLLPPAAPTGFTRTS-TCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGS 190
+ LPPAA +T+ S +C + +A G G+ P + P G+GG+
Sbjct: 173 AGPASPN---LPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEGGA 221
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 35.4 bits (80), Expect = 0.031
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 29 PVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLS 88
P+S +A G P+ G A ++ +S S L+ G P S+ P S +
Sbjct: 353 PLSPSATGDTRGVPQPSWGPEAQAASASSSPLEALEACLKGIPPNGSSPSQLPPTSCSQN 412
Query: 89 VRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAP 148
+ S ++P + P RS S A RE G L+ V L P P
Sbjct: 413 PQPGDSRSQKPELQPH---RSHS---EEATREPVLPLG---LQSCVRDGPSRPLAPRGTP 463
Query: 149 TGFTRTSTC-------SSMGAQAL--GAGSAPGASPFRG 178
T F+ +S+ S +G Q G GS PG+SP +G
Sbjct: 464 TSFSSSSSTDWDLDFGSPVGNQGQHPGKGSPPGSSPLQG 502
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 35.0 bits (79), Expect = 0.040
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 47 GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
GNSA S +P G G P + +A+P SVRA+ E + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234
Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
G+ S +G ++G SG+G+ G G ++ G + S+ S G
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
G + S + S + GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 35.0 bits (79), Expect = 0.040
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 47 GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
GNSA S +P G G P + +A+P SVRA+ E + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234
Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
G+ S +G ++G SG+G+ G G ++ G + S+ S G
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
G + S + S + GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 35.0 bits (79), Expect = 0.040
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 47 GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
GNSA S +P G G P + +A+P SVRA+ E + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234
Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
G+ S +G ++G SG+G+ G G ++ G + S+ S G
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
G + S + S + GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 35.0 bits (79), Expect = 0.040
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 47 GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
GNSA S +P G G P + +A+P SVRA+ E + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234
Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
G+ S +G ++G SG+G+ G G ++ G + S+ S G
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
G + S + S + GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.0 bits (79), Expect = 0.040
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 32 VTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSVRA 91
V + + ++P+ PARG + S S+PSS R G A AG R + R+
Sbjct: 345 VRDKAAAAAPTPPARGKESPSPRSAPSSQGR------GGRAAGGAGRRRRRRRRRRRSRS 398
Query: 92 AAS-----GERRPH-VPPWDGARSRSWCAGSAWREKAGDSGTG 128
+AS G RRP PP +RS S S+ DSG+G
Sbjct: 399 SASAPRRRGRRRPRPAPPRGSSRSLSRARSSS------DSGSG 435
Score = 30.0 bits (66), Expect = 1.3
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 28/175 (16%)
Query: 35 RGSFSSPSNPARGNSAASSFSSPSSLQRQ--HVGEPGEPALPSAGLARPSASQP-LSVRA 91
R S S +P+ G+ S + S QR H G PG P +PS+ P + +A
Sbjct: 293 RSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPD---KPSSPSPRVRDKA 349
Query: 92 AASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGT-----LRKRVEGLGDGVLLP-- 144
AA+ PP G S S + + + + G + G R+R P
Sbjct: 350 AAAAP----TPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR 405
Query: 145 -------PAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQ 192
PA P G +R+ + + + + APG P GS G GG G+
Sbjct: 406 RGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS----ERGHGGHGK 456
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 35.0 bits (79), Expect = 0.040
Identities = 45/169 (26%), Positives = 57/169 (33%), Gaps = 37/169 (21%)
Query: 29 PVSVTARGSFSS-PSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
PV GS SS P G+ ++ S+PS PG+PA S G RP +
Sbjct: 395 PVPRRQNGSSSSGPERSISGSKKPTNDSNPSRRTVSGTCGPGQPASSSGGPGRPISGSVS 454
Query: 88 SVRAAAS--GERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPP 145
S R S G RP P + LR+ V GLG PP
Sbjct: 455 SARPLGSSRGPGRPVSSPHE------------------------LRRPVSGLG-----PP 485
Query: 146 AAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQTP 194
S S+ A + S PG ++ GPG S P
Sbjct: 486 GRSVSGPGRSISGSIPAGRTVSNSVPGR-----PVSSLGPGQTVSSSGP 529
Score = 33.9 bits (76), Expect = 0.089
Identities = 40/153 (26%), Positives = 56/153 (36%), Gaps = 16/153 (10%)
Query: 37 SFSSPSNP----ARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSVRAA 92
S SSPS P +R +A + SL PG P P QP S ++
Sbjct: 318 STSSPSVPKTSASRTQKSAVEHKAKKSLSHPSHSRPGPMVTPHNKAKSPGVRQPGSSSSS 377
Query: 93 ASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFT 152
A G+ P G + +G R + G S +G R G + P+ T
Sbjct: 378 APGQ------PSTGVARPTVSSGPVPRRQNGSSSSGPERSI---SGSKKPTNDSNPSRRT 428
Query: 153 RTSTCSSMGAQALGAGSAPGASPFRGSLTKAGP 185
+ TC Q + PG P GS++ A P
Sbjct: 429 VSGTCGP--GQPASSSGGPG-RPISGSVSSARP 458
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 34.7 bits (78), Expect = 0.052
Identities = 48/181 (26%), Positives = 62/181 (34%), Gaps = 34/181 (18%)
Query: 8 RSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGE 67
RS++ N A D YM ++ GS S S+ S AS S+P + +
Sbjct: 641 RSSSSNLGA---DDGYMPMTPGAALAGSGSGSCRSDDYMPMSPAS-VSAPKQILQPRAAA 696
Query: 68 PGEPALPSAGLARPSASQPLSVRAAASG-----ERRPHVPPWDGARSRSWCAGSAWREKA 122
A+PSAG A P+ + ASG P D R WC E A
Sbjct: 697 AAAAAVPSAGPAGPAPTSAAGRTFPASGGGYKASSPAESSPEDSGYMRMWCGSKLSMEHA 756
Query: 123 GDSGTGTLRKRVEGLGDGVLLP-----PAAPTGFTRTSTCSSMGAQALGAGSAPGASPFR 177
DG LLP +P+ T T + AL PG P R
Sbjct: 757 ----------------DGKLLPNGDYLNVSPSDAVTTGTPPDFFSAAL----HPGGEPLR 796
Query: 178 G 178
G
Sbjct: 797 G 797
Score = 32.0 bits (71), Expect = 0.34
Identities = 48/177 (27%), Positives = 65/177 (36%), Gaps = 18/177 (10%)
Query: 26 EHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQ 85
+ SP+S FSSP +P G + S L P P LP A PS+S
Sbjct: 971 QRSPLSDYMNLDFSSPKSPKPGAPSGHPVGSLDGLLSPEASSP-YPPLPPRPSASPSSSL 1029
Query: 86 PLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPP 145
A GE P A ++ A S+ GD+G T + G+ P
Sbjct: 1030 QPPPPPPAPGELYRLPPASAVATAQGPGAASSLSSDTGDNGDYT--EMAFGVAATPPQPI 1087
Query: 146 AAP------------TGFTRTSTCSSM-GAQALGAGSAPGASPFRGS-LTKAGPGDG 188
AAP +G R S + G +A S P P RG+ + +A P G
Sbjct: 1088 AAPPKPEAARVASPTSGVKRLSLMEQVSGVEAFLQASQP-PDPHRGAKVIRADPQGG 1143
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 34.7 bits (78), Expect = 0.052
Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 39/184 (21%)
Query: 31 SVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLA----------- 79
S + GS SS + + +S SS SS S Q G+PG + GL+
Sbjct: 1116 SSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQ 1175
Query: 80 -------RPSASQPL-----------SVRAAASGERRPHVPPWDGARSRSWCAGSAWREK 121
PS S+P S + A+ + P PP A+S +GS
Sbjct: 1176 GKPSSLMNPSLSKPNISPSHSRPPGGSDKLASPMKPVPGTPPSSKAKS-PISSGSGGSHM 1234
Query: 122 AGDSGTGTLRKRVEGLGDGVLL----PPAAPTGFTRTSTCSSMGAQALGA----GSAPGA 173
+G S + + K GLG L PP++ + +S+ SS G+ + GS+ G
Sbjct: 1235 SGTSSSSGM-KSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGK 1293
Query: 174 SPFR 177
SP R
Sbjct: 1294 SPSR 1297
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.052
Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 15/182 (8%)
Query: 4 PETARSTAMNARAQYRDFTYMGEHS---PVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
PE AR D G+ + P S RG++ P R + A S SS S
Sbjct: 192 PEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVR--RASEARMSSSSRDSE 249
Query: 61 QRQHVGEPGEPALPSAGLARPSASQ-----PLSVRAAASGE-RRPHVPPWDGARSRSWCA 114
H G G+ + AGL R ++ Q P SV++ A + +P P G+R A
Sbjct: 250 SWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTP--GGSRPGPGPA 307
Query: 115 GSAWREK--AGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG 172
G +K S GT E GV PA R S S +QA A P
Sbjct: 308 GRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPA 367
Query: 173 AS 174
A+
Sbjct: 368 AA 369
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 34.7 bits (78), Expect = 0.052
Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 15/182 (8%)
Query: 4 PETARSTAMNARAQYRDFTYMGEHS---PVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
PE AR D G+ + P S RG++ P R + A S SS S
Sbjct: 188 PEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVR--RASEARMSSSSRDSE 245
Query: 61 QRQHVGEPGEPALPSAGLARPSASQ-----PLSVRAAASGE-RRPHVPPWDGARSRSWCA 114
H G G+ + AGL R ++ Q P SV++ A + +P P G+R A
Sbjct: 246 SWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTP--GGSRPGPGPA 303
Query: 115 GSAWREK--AGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG 172
G +K S GT E GV PA R S S +QA A P
Sbjct: 304 GRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPA 363
Query: 173 AS 174
A+
Sbjct: 364 AA 365
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.052
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
S S ++ S SS S+ + +S++SS SS SS +PG ALP +P
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALP----------KPA 2663
Query: 88 SVRAAASGERRPHVP--PWDGAR-SRS 111
S + GERR P P D R SRS
Sbjct: 2664 SPKKPPPGERRSRSPRKPIDSLRDSRS 2690
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.7 bits (78), Expect = 0.052
Identities = 35/118 (29%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 74 PSAGLARPSASQPLSVRAAASGERR-PHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRK 132
PS G PS + P A ASG P GA G +R G T +
Sbjct: 339 PSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGG----GGGGYRPIIQSPGYKTGKG 394
Query: 133 RVEGLGDGVLLPPAAPTGFTRTSTCSSMG--AQALGAGSAPGASPFRGSLTKAGPGDG 188
G PP P T T C S+G A A G A GA G G G
Sbjct: 395 GYGAAAGGATRPP--PPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQG 450
Score = 32.3 bits (72), Expect = 0.26
Identities = 49/158 (31%), Positives = 57/158 (36%), Gaps = 23/158 (14%)
Query: 41 PSNPARGNSAASSFSSPSSLQRQHVGEPGE----PALPSAGLARPSASQPLSVRAAASGE 96
PS P A SP LQ Q G GE PA S GL P+AS LS S
Sbjct: 483 PSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGL--PTASPSLSYSTGHSPA 540
Query: 97 RRPHVPPWDGARSRSWCAGS---AWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTR 153
H W + S R TG R G+G P AP +
Sbjct: 541 LSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATG----RPPGVGS-----PGAPGKYLS 591
Query: 154 TSTCSSMGAQALGAGS-APGASPFR----GSLTKAGPG 186
+ S+ GAGS A GA ++ GS AGPG
Sbjct: 592 SVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPG 629
Score = 28.9 bits (63), Expect = 2.9
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 41 PSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSV---RAAASGER 97
P PA + +PSS + P PA+PS P A+ PL+ AA
Sbjct: 1477 PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPE 1536
Query: 98 RPHVP---PWDGARSRSWCA--GSAWREKAGDSGTGTLRKRVE 135
P +P P A+ + A G E G G R+R E
Sbjct: 1537 DPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDE 1579
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 34.3 bits (77), Expect = 0.068
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 38 FSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGER 97
F S S RG + + ++ + H E E L G +A + S R +G +
Sbjct: 168 FGSGSAAGRGPTILDAPNTEGA----HGAEGAEWTLAGTGQEAQAAPKRGSTRPLCTGHQ 223
Query: 98 RPHVP-PWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTST 156
P V P + ++ G+A D GT R R+ G+ + L P AA TRT+
Sbjct: 224 EPGVEEPGELEAAQERALGTA-----ADLGTLAPRGRLAGVTEEALKPTAA----TRTTL 274
Query: 157 CSSMGAQALGAGSAPGAS 174
AQALG PG S
Sbjct: 275 LGGKEAQALG---VPGGS 289
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 33.9 bits (76), Expect = 0.089
Identities = 48/161 (29%), Positives = 58/161 (36%), Gaps = 27/161 (16%)
Query: 45 ARGNSAASSFSSPSSLQRQHVGEPGEPALPSA-GL-ARPSASQP---LSVRAAASGERRP 99
A G S + P G PGEP LP A GL RP + P + A + RP
Sbjct: 529 APGERGPSGLAGPKGANGDP-GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 587
Query: 100 HVPPWDGARSRSWCAG-------SAWREKAGDS---GTGTLRKRVEGLGDGVLLPPAAPT 149
P GAR + G + KAG+ G LR G+ P P
Sbjct: 588 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 647
Query: 150 GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAG-PGDGG 189
G A G APG S F+G G PG+GG
Sbjct: 648 G----------PAGERGEQGAPGPSGFQGLPGPPGPPGEGG 678
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 33.9 bits (76), Expect = 0.089
Identities = 48/161 (29%), Positives = 58/161 (36%), Gaps = 27/161 (16%)
Query: 45 ARGNSAASSFSSPSSLQRQHVGEPGEPALPSA-GL-ARPSASQP---LSVRAAASGERRP 99
A G S + P G PGEP LP A GL RP + P + A + RP
Sbjct: 460 APGERGPSGLAGPKGANGDP-GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 518
Query: 100 HVPPWDGARSRSWCAG-------SAWREKAGDS---GTGTLRKRVEGLGDGVLLPPAAPT 149
P GAR + G + KAG+ G LR G+ P P
Sbjct: 519 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 578
Query: 150 GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAG-PGDGG 189
G A G APG S F+G G PG+GG
Sbjct: 579 G----------PAGERGEQGAPGPSGFQGLPGPPGPPGEGG 609
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,230
Number of Sequences: 37866
Number of extensions: 548256
Number of successful extensions: 3356
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 2993
Number of HSP's gapped (non-prelim): 650
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.