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Search of human proteins with 239754657
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
(384 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 806 0.0
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 806 0.0
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 806 0.0
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 429 e-120
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 67 4e-11
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 57 2e-08
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 57 2e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 57 2e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 57 4e-08
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 56 6e-08
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 55 8e-08
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 55 8e-08
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 55 1e-07
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 54 2e-07
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 54 2e-07
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 54 2e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 54 2e-07
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens] 54 3e-07
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens] 54 3e-07
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 53 4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 53 5e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 53 5e-07
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 53 5e-07
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 53 5e-07
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 53 5e-07
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 52 7e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 9e-07
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 52 9e-07
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 52 9e-07
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 52 9e-07
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 806 bits (2081), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
Query: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV
Sbjct: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
Query: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK
Sbjct: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
Query: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
PYGSSSGPLLLLKTLLWLSYPEES
Sbjct: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 806 bits (2081), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
Query: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV
Sbjct: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
Query: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK
Sbjct: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
Query: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
PYGSSSGPLLLLKTLLWLSYPEES
Sbjct: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 806 bits (2081), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
Query: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV
Sbjct: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
Query: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK
Sbjct: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
Query: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
PYGSSSGPLLLLKTLLWLSYPEES
Sbjct: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 429 bits (1104), Expect = e-120
Identities = 206/208 (99%), Positives = 207/208 (99%)
Query: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1 MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
Query: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLK 208
PPPLTCRRCRAAPRRSARPFRRPGLP +
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPCR 208
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 66.6 bits (161), Expect = 4e-11
Identities = 91/339 (26%), Positives = 116/339 (34%), Gaps = 57/339 (16%)
Query: 41 SGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHP--------DSRTRPAARPPHPRTRS 92
S C+ K + T SP + SG+ H DSR+ P H R
Sbjct: 228 SSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKH---RD 284
Query: 93 PPGRSGSGTTFSAVPPRPS--------QHQSGSRLRPAAPGPRPGCSSAR----ASPAPA 140
++GS + + P PS Q GS R A G RPG + + +SP+P
Sbjct: 285 EGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPR 344
Query: 141 APQAAARTAPGRAASGG------SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPR 194
AA AP A G S P S+G+G G R + R +APR
Sbjct: 345 VRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPR 404
Query: 195 RSARPFRRPGLP-----------LKSRPGSGTGARSCG-----TWGSGGGPGTAAASSPS 238
R R RP P S GSG GA G G GG A P
Sbjct: 405 RRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPR 464
Query: 239 ADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGG 298
A +S SP P G R G G+ S G P S +P + R R
Sbjct: 465 ARPASTSPSP----GAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR--------S 512
Query: 299 GVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPK 337
P P +P P S + G HS A + +
Sbjct: 513 AEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRAR 551
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 57.4 bits (137), Expect = 2e-08
Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)
Query: 80 RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
RP ++PP P+ + P T A P + + SR PR +AR PAP
Sbjct: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
Query: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199
P A +R + RAA G GPG G P GG+ P RAAP AR
Sbjct: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
Query: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259
G C T G G A SS QP G R R
Sbjct: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
Query: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313
C RRR G G G PA PP RR+ + + L G G S + P R
Sbjct: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
Query: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337
++ RF G +++ + T P+
Sbjct: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 57.4 bits (137), Expect = 2e-08
Identities = 101/341 (29%), Positives = 122/341 (35%), Gaps = 81/341 (23%)
Query: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRS------PPGRSGSGTTFSAVPPRP 110
GT +P A + + AP P PA + P R R G +G G A+P
Sbjct: 27 GTDAPGPAVCSPTARAPPP---ILPAPQRPPTRAREWEGAAWAAGATGVGAALLALPGSR 83
Query: 111 SQHQSGSRLRPAAPGPRPGCSSARAS----PAP----------AAPQAAARTAPGRAAS- 155
+ R A+PGP PG AR S P P P AAAR AP R S
Sbjct: 84 RLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSL 143
Query: 156 GGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSG 214
P S G RPS G P CRR CR RR RP +P PL+ R GS
Sbjct: 144 ARCLPRSVGS-----CVRPS-VGPSLPRRHCRRHCRCHCRR--RPLPKPP-PLQPRLGSA 194
Query: 215 TGARSCGTWGSGGGPGTA---------AASSPSADFSSDSPQPIIIFGGALRVRGCGGRR 265
+ R P + A SP+ P P + G V G RR
Sbjct: 195 SPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPA---GHGLPLPRSLSRGGEVV---GARR 248
Query: 266 RSNGQ-----GTQPGCRLLSP-------APPR-------RRYRKPLTLSFGGGVSSPTHP 306
R G+ G + GC L SP AP R R++RK GGG P
Sbjct: 249 RRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKR-----GGG------P 297
Query: 307 VVAPRRHFPRSVPRFPAGFRTHSLGTA--PKPKCWKHSQPW 345
V+PR R R T P P W+ P+
Sbjct: 298 GVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPY 338
Score = 47.4 bits (111), Expect = 2e-05
Identities = 83/318 (26%), Positives = 107/318 (33%), Gaps = 45/318 (14%)
Query: 4 SGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFSPES 63
+ PGP P G R G RR SA R ++ R R+ L R
Sbjct: 95 ASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAA--RAAPPRQRSLARCLPRSVG 152
Query: 64 AAGTEVSGAPHPDSRTRPAAR---PPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
+ G P R R P + PP + G SA PPR + +GSR
Sbjct: 153 SCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLG---SASPPRLAAPLAGSRAP 209
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
+P PR A SP A G P S +G + VGAR R G +
Sbjct: 210 SLSPFPRRCRRRAERSP---------------AGHGLPLPRSLSRGGEVVGARRRRGGEE 254
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPL-KSRPGSGTGARSCGTWGS-GGGPGTAAASSPS 238
RR R RR P +P + PG R+ W GGGPG +
Sbjct: 255 ------RRVRG--RRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQ 306
Query: 239 ADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGC--RLLSPAPPRRRYRKPLTLSF 296
+ P R RG R + Q G R + A PR
Sbjct: 307 GEGVRGGVTP--------RARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAEEV 358
Query: 297 GGG--VSSPTHPVVAPRR 312
GG S+PT+ ++ RR
Sbjct: 359 PGGHTASNPTYEPLSSRR 376
Score = 39.3 bits (90), Expect = 0.006
Identities = 58/214 (27%), Positives = 72/214 (33%), Gaps = 56/214 (26%)
Query: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
+ G R P P PGC APQ APG A P +R
Sbjct: 2 ERGQRFTPHPRTPAPGCPE-------VAPQPEGTDAPGPAV---CSPTARA--------- 42
Query: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGG----P 229
PPP+ AP+R P ++R G A + G G G P
Sbjct: 43 -------PPPIL-----PAPQRP---------PTRAREWEG-AAWAAGATGVGAALLALP 80
Query: 230 GTAAASSPSADFSSDSPQPIIIFGGALRVRG-CG------GRRRSNGQGTQPGCRLLSPA 282
G+ F SP P GA R RG CG RR + G +P +
Sbjct: 81 GSRRLGRVPLTFREASPGPA---PGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAP 137
Query: 283 PPRRRYRKPLTLSFGGGVSSPTHPVVAPRRHFPR 316
P +R + L S G V P + PRRH R
Sbjct: 138 PRQRSLARCLPRSVGSCVRPSVGPSL-PRRHCRR 170
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 57.4 bits (137), Expect = 2e-08
Identities = 70/228 (30%), Positives = 82/228 (35%), Gaps = 55/228 (24%)
Query: 73 PHPDSRTRPAARPP--HPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
PH + P +PP P PP PP P Q S + PGP PG
Sbjct: 65 PHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQ--QQQPPPPPQ-DSSKPVVAQGPGPAPGV 121
Query: 131 SSARASPAPAAPQAAARTAPGRAASGGSGPG----------SRGQG-------SDQVGAR 173
SA PA+ A T P A GSGPG S G S V
Sbjct: 122 GSA----PPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTT 177
Query: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAA 233
P +AGG PPP A P P + PG PG G + G GGGPG
Sbjct: 178 PPQAGGPPPPPA-----AVPGPGPGPKQGPG------PGGPKGGKMPGGPKPGGGPG--- 223
Query: 234 ASSPSADFSSDSPQPIIIFGGALRVRGCGGRR------RSNGQGTQPG 275
S+P P+P GG R GGR+ + + QG PG
Sbjct: 224 LSTPGG-----HPKPPHRGGGEPR----GGRQHHPPYHQQHHQGPPPG 262
Score = 50.4 bits (119), Expect = 3e-06
Identities = 40/112 (35%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
SGAP P S P PP T +PPG S VP P Q A PGP PG
Sbjct: 139 SGAP-PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPG 197
Query: 130 CSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQP 181
+ P P P+ PG GG GPG G P R GG+P
Sbjct: 198 ---PKQGPGPGGPKGG--KMPGGPKPGG-GPGLSTPGGHP--KPPHRGGGEP 241
Score = 48.1 bits (113), Expect = 1e-05
Identities = 40/122 (32%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 71 GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
G+ P S + P A PP + +PPG SG G P P+ + + P AP P P
Sbjct: 122 GSAPPASSSAPPATPP--TSGAPPG-SGPG-------PTPTPPPAVTSAPPGAPPPTPPS 171
Query: 131 SSARASPAPAA---PQAAARTAPGRAASGGSGPGSRGQGSDQVGARP------SRAGGQP 181
S +P A P AA PG G GPG G G +P S GG P
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHP 231
Query: 182 PP 183
P
Sbjct: 232 KP 233
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 56.6 bits (135), Expect = 4e-08
Identities = 71/278 (25%), Positives = 100/278 (35%), Gaps = 44/278 (15%)
Query: 73 PHPDSRTRPAARPPHPR--TRSPPGRSGSGTTFSAVPPRP-----SQHQSGSRLRPAAPG 125
P + T PAA PP P+ +PP + G+ TT +A PP P + G+ PAA
Sbjct: 1144 PPKGAPTTPAATPPSPKGGLATPPPK-GAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1202
Query: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG--QPPP 183
P P A+P+P P G + P +G + PS GG PPP
Sbjct: 1203 PSP--KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPP 1260
Query: 184 LTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSS 243
+ P + P + GL G+ A GGP T+ ++
Sbjct: 1261 ----KGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPP-SPKGGPATSPPKGAPTPPAA 1315
Query: 244 DSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTL-SFGGGVSS 302
P P +G G G T P ++P P+ P T S GG ++
Sbjct: 1316 TPPSP----------KGSPGTPPPKGAPTPPA---VTPPSPKGTPTLPATTPSSKGGPTT 1362
Query: 303 PTHPVVAPRRHFPRSVPRFPAGFRTHSLG---TAPKPK 337
P+ + P PA +H G T P PK
Sbjct: 1363 PS----------SKEGPTPPAATPSHKGGPAMTPPSPK 1390
Score = 52.8 bits (125), Expect = 5e-07
Identities = 83/307 (27%), Positives = 108/307 (35%), Gaps = 40/307 (13%)
Query: 60 SPESAAGT-EVSGAPHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAVPPRP-----SQ 112
SP+ T GAP T PAA PP P+ + P G+ TT +A PP P +
Sbjct: 1181 SPKGGLATPSPKGAP-----TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP 1235
Query: 113 HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
G+ PAA P P A+P P P G + P +G + V
Sbjct: 1236 SPKGAPTTPAATPPSP--KGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVT 1293
Query: 173 RPSRAGG----------QPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCG 221
PS GG PP T + +P + P P P + P GT
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSP-GTPPPKGAPTPPAVTPPSPKGTPTLPAT 1352
Query: 222 TWGSGGGPGTAAAS---SPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRL 278
T S GGP T ++ +P A S P + R + G T P
Sbjct: 1353 TPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPK---GDPTSPAVIP 1409
Query: 279 LSP--APPRRRYRKPLTLSFGGGVSSPTHPVV----APRRHFPRSVPRFPA--GFRTHSL 330
LSP AP R+ G ++ P V AP P+ P P+ G T
Sbjct: 1410 LSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPA 1469
Query: 331 GTAPKPK 337
T P PK
Sbjct: 1470 VTPPSPK 1476
Score = 52.0 bits (123), Expect = 9e-07
Identities = 75/285 (26%), Positives = 99/285 (34%), Gaps = 36/285 (12%)
Query: 73 PHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAVPPRP-----SQHQSGSRLRPAAPGP 126
P + T PAA PP P+ + P G+ TT +A PP P + G+ PAA P
Sbjct: 1167 PPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1226
Query: 127 RPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
P A+P+P P G + P +G + PS GG P
Sbjct: 1227 SP--KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP--- 1281
Query: 187 RRCRAAPRRS-ARPFRRPGLPLKSRP-GSGT--GARSCGTWGSGGGPGTAAASSPSADFS 242
+ AP + P G P S P G+ T A GS G P A +P A +
Sbjct: 1282 -PHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPA-VT 1339
Query: 243 SDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP--------GCRLLSPAPPRRRYRKPLTL 294
SP+ G S+ +G P G ++P P+R P
Sbjct: 1340 PPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIP--- 1396
Query: 295 SFGGGVSSPTHPVVAPRRHFPRSVPRFPA---GFRTHSLGTAPKP 336
PT P V P P+ P P G T S G P
Sbjct: 1397 ---SPKGDPTSPAVIPLS--PKKAPATPVTREGAATPSKGDLTPP 1436
Score = 43.5 bits (101), Expect = 3e-04
Identities = 78/316 (24%), Positives = 107/316 (33%), Gaps = 51/316 (16%)
Query: 49 SRKSRLERGTFSPESA-AGTEVSGAPHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAV 106
S + R T +P+ A GAP P PAA PP P+ + P + T +A
Sbjct: 915 SSSPKKARATPAPKGIPASPSPKGAPTP-----PAATPPSPKGGPATPSPKWAPTPPAAT 969
Query: 107 PPRP-----SQHQSGSRLRPAA--PGPR--PGCSSARASPAPAAPQAAARTAPGRAASGG 157
PP P + G+ PAA P P+ P S + +P P A T P S
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAV-----TPPSPKGSPA 1024
Query: 158 SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGA 217
+ P +G + PP T + +P + P P P + P S G
Sbjct: 1025 ATPFPKGAST-------------PPAATPPSPKGSPAATPLPKGAPTTPAATLP-SPKGG 1070
Query: 218 RSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRR--SNGQGTQPG 275
+ + P A SP ++ SP+ + A GG G T P
Sbjct: 1071 PATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPA 1130
Query: 276 CRLLSP------APPRRRYRKPLTL--SFGGGVS------SPTHPVVAPRRHFPRSVPRF 321
SP PP+ P S GG++ +PT P P
Sbjct: 1131 ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190
Query: 322 PAGFRTHSLGTAPKPK 337
P G T T P PK
Sbjct: 1191 PKGAPTTPAATPPSPK 1206
Score = 42.0 bits (97), Expect = 0.001
Identities = 74/302 (24%), Positives = 101/302 (33%), Gaps = 42/302 (13%)
Query: 58 TFSPESAAGTEVSGAPHPD---SRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQ 114
T P+ V P P + P P T S P ++ + +P PS
Sbjct: 879 TLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSP-- 936
Query: 115 SGSRLRPAA--PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
G+ PAA P P+ G ++ AP P A P G + P +G +
Sbjct: 937 KGAPTPPAATPPSPKGGPATPSPKWAPTPPAA----TPPSPKGGPATPSPKGAPTPPAAT 992
Query: 173 RPSRAGG----------QPPPLTCRRCRAAPRRSARPF-RRPGLPLKSRPGSGTGARSCG 221
PS GG PP +T + +P +A PF + P + P S G+
Sbjct: 993 PPSPKGGPATPSPKGAPTPPAVTPPSPKGSP--AATPFPKGASTPPAATPPSPKGS-PAA 1049
Query: 222 TWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSP 281
T G P T AA+ PS +P GA G T P + +P
Sbjct: 1050 TPLPKGAPTTPAATLPSPKGGPATPS----LKGAPTPPAATPPSPKGGPAT-PSPK-GAP 1103
Query: 282 APPRRRYRKPLTLSFGGGVSSPTH------PVVAPRRHFPRSVPRFPAGFRTHSLGTAPK 335
PP P GG+++P H P P P G T T P
Sbjct: 1104 MPPAATPPSP-----KGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1158
Query: 336 PK 337
PK
Sbjct: 1159 PK 1160
Score = 41.2 bits (95), Expect = 0.002
Identities = 68/316 (21%), Positives = 97/316 (30%), Gaps = 51/316 (16%)
Query: 56 RGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPG--------------RSGSGT 101
+G + S G + A P S A PP +PP G+
Sbjct: 1229 KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPN 1288
Query: 102 TFSAVPPRP-----SQHQSGSRLRPAAPGPRPGCSSARASP--APAAPQAAARTAPGRAA 154
PP P + G+ PAA P P S P AP P + G
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPT 1348
Query: 155 SGGSGPGSRG--------QGSDQVGARPSRAGGQP-PPLTCRRCRAAPRRSARPFRRPGL 205
+ P S+G +G A PS GG P + +R A P P +
Sbjct: 1349 LPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI 1408
Query: 206 PLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRR 265
PL + T G AA+ D + + P+ + GG
Sbjct: 1409 PLSPKKAPATPVTREG-----------AATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA 1457
Query: 266 RSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFG--------GGVSSPTHPVVAPRRHFPRS 317
+ +G + P+P K + S + +PT P V P P+
Sbjct: 1458 TPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSS--PKE 1515
Query: 318 VPRFPAGFRTHSLGTA 333
VP P+ R TA
Sbjct: 1516 VPATPSSRRDPIAPTA 1531
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 55.8 bits (133), Expect = 6e-08
Identities = 62/202 (30%), Positives = 79/202 (39%), Gaps = 31/202 (15%)
Query: 19 GARACGGRRAN--FSLSAAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPD 76
G +C GR F+ FR G R RSR+ R R F + G G HP
Sbjct: 1019 GPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYR-EFRGDDGRGGGTGGPNHP- 1076
Query: 77 SRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQS-------GSRLRPA---APGP 126
P PR R+ G+ + +P R Q S S L P+ AP P
Sbjct: 1077 ---------PAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTP 1127
Query: 127 RPGCSSARASPAPAAPQAAARTAPGR-AASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
+ G + + AP P A AP R A GG RG V +R R GG+PPP
Sbjct: 1128 KEG-TLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRG-----VPSRRGRGGGRPPPQV 1181
Query: 186 CRRCRAAPRRSARPFRRPGLPL 207
C + P +S P + P PL
Sbjct: 1182 CPGW-SPPAKSLAPKKPPTGPL 1202
Score = 44.3 bits (103), Expect = 2e-04
Identities = 65/262 (24%), Positives = 88/262 (33%), Gaps = 51/262 (19%)
Query: 68 EVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVP---PRPSQHQSGSRLRPAAP 124
E GAP + PAA P P T +PP AVP P P S P
Sbjct: 495 EKFGAPDKRLKAEPAAPPAAPSTPAPP---------PAVPKELPAPPAPPPASAPTPETE 545
Query: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVG----ARPSRAGGQ 180
P A+A PA + P AP SGG S GS + PS+ G +
Sbjct: 546 PEEP----AQAPPAQSTPTPGVAAAP-TLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPE 600
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
PP P P +P G G G G P + P
Sbjct: 601 PP------------EEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPR-- 646
Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
F + ++ +++ Q Q G +P PP +P+TL G V
Sbjct: 647 FQRQQQEQLL-----------KQQQQHQWQQHQQGSAPPTPVPPSP--PQPVTL---GAV 690
Query: 301 SSPTHPVVAPRRHFPRSVPRFP 322
+P P P+ +P ++ R P
Sbjct: 691 PAPQAPPPPPKALYPGALGRPP 712
Score = 43.1 bits (100), Expect = 4e-04
Identities = 66/257 (25%), Positives = 87/257 (33%), Gaps = 21/257 (8%)
Query: 63 SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
S G +GAP P P P PPG + P + + ++L
Sbjct: 837 SYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGP 896
Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGS--RGQGSDQVGARPSRAG-- 178
G +P P P+ +RT G PGS RG ++ GA P RAG
Sbjct: 897 EAGRKPARGVGSGGQGPPPPRRESRT----ETRWGPRPGSSRRGIPPEEPGAPPRRAGPI 952
Query: 179 GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPS 238
+PPP T + P + P K P T + G + + A
Sbjct: 953 KKPPPPT--KVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLR 1010
Query: 239 ADFSSDSPQPIIIFG---GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRK-PLTL 294
D+S + P G G RG G R G+G R R YR+
Sbjct: 1011 RDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREF------RSYREFRGDD 1064
Query: 295 SFGGGVSSPTHPVVAPR 311
GGG P HP APR
Sbjct: 1065 GRGGGTGGPNHP-PAPR 1080
Score = 39.3 bits (90), Expect = 0.006
Identities = 75/326 (23%), Positives = 106/326 (32%), Gaps = 61/326 (18%)
Query: 51 KSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSP--PGRSGSGTTFSAVPP 108
K +L G SP + G+ + RP R H R + P R
Sbjct: 1210 KEKLIPGPLSPVARGGSNGGSNVGMEDGERPRRRR-HGRAQQQDKPPRFRRLKQERENAA 1268
Query: 109 RPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGR----------AASGGS 158
R S+ + L +APGP ++ +PAP A + + AS S
Sbjct: 1269 RGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWETASESS 1328
Query: 159 GPGSRGQGSDQ-----------VGARPSRAGGQPPPLTCRR----CRAAPRRSARPF--R 201
S +G + VG GG P ++ + A S R F +
Sbjct: 1329 DFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQ 1388
Query: 202 RPGLPLKSR-PGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRG 260
RPG+ ++R PG G A S G+ GGG G + P P P
Sbjct: 1389 RPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSP------------ 1436
Query: 261 CGGRRRSNGQGTQPGCRLLSPAPPRRR---------YRKPLTLSFG-GGVSSPTHPVVAP 310
+ RS +P L P PP + P + +SS V AP
Sbjct: 1437 ---KNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAP 1493
Query: 311 RRHFPRSVPRFPAGFRTHSLGTAPKP 336
H PR G G +P+P
Sbjct: 1494 GGH-----PRHKPGLPQAPQGPSPRP 1514
Score = 38.1 bits (87), Expect = 0.013
Identities = 57/244 (23%), Positives = 76/244 (31%), Gaps = 66/244 (27%)
Query: 88 PRTRSPPGRSGSGTT--FSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAA 145
P+ PG G G SA+ ++ + + RPG P P +
Sbjct: 1348 PKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGS 1407
Query: 146 ARTAPGRAASGGSGPGSR-GQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPG 204
+ ++ G GG GPG R G G + PS PP RP PG
Sbjct: 1408 SGSSSG---GGGGGPGGRTGPGRGDKRSWPSPKNRSRPP------------EERP---PG 1449
Query: 205 LPLKSRPGSGTG-------------------ARSCGTWGSGGGPGTAAASSPSADFSSDS 245
LPL P S + A+ GS PG P +
Sbjct: 1450 LPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQG 1509
Query: 246 P--------QPIIIFGGALR----------VRGCGGRRRSNGQGTQPGCRLLSPAPPRRR 287
P +P + G VRG GG R + +SP PP+RR
Sbjct: 1510 PSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAG--------VSPFPPKRR 1561
Query: 288 YRKP 291
R P
Sbjct: 1562 ERPP 1565
Score = 30.8 bits (68), Expect = 2.1
Identities = 37/136 (27%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
Query: 112 QHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAAR-TAPGRAASGGSGPGSRGQGSDQV 170
Q QS + A+ P AS PA+ Q AP SG S Q S
Sbjct: 90 QEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPLVPSGVKSWAQASVTH 149
Query: 171 GARPSRAGGQPPPLTCRRCR-------AAPRRSARPFRRPGLPLKSRPGSGTGARSCGTW 223
GA GG+ L R R AA + R S PG ++ TW
Sbjct: 150 GAHGD--GGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTW 207
Query: 224 GSGGGPGTAAASSPSA 239
GGG G P +
Sbjct: 208 RDGGGRGPDELEGPDS 223
Score = 30.8 bits (68), Expect = 2.1
Identities = 33/131 (25%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHP------RTRSPPGRSGSGTTFSAVPPRP 110
GT +S +G ++SG S P ++ P PP R G + +AVP
Sbjct: 1643 GTEMSQSDSGVDLSGDSQVSSG--PCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEG 1700
Query: 111 SQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQV 170
R P AP R P P P R+ + G+ PG
Sbjct: 1701 PPGSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERS---QRTDRGTEPGP-------- 1749
Query: 171 GARPSRAGGQP 181
RPS G P
Sbjct: 1750 -IRPSHRPGPP 1759
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 55.5 bits (132), Expect = 8e-08
Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
Query: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
R R PL +R G R G GG G + + + DS + F
Sbjct: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
Query: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
G+ R G GR PRR R+P S+P P +
Sbjct: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
Query: 314 FPRSVPRFPAGFR 326
PRS PR PA R
Sbjct: 216 SPRSDPRDPAAPR 228
Score = 32.7 bits (73), Expect = 0.56
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
Query: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSP-PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
G E + RP PP PR P PGR S + + R +SG R
Sbjct: 99 GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR------ 152
Query: 125 GPRPGCSSARASPAPAA----PQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
G R G + A A T PG + G SG R + + +PS
Sbjct: 153 GDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG---REEEPRRERRQPSLQRST 209
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLP 206
PP T R+ PR A P P P
Sbjct: 210 PPAPTYSP-RSDPRDPAAPRAGPEAP 234
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 55.5 bits (132), Expect = 8e-08
Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
Query: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
R R PL +R G R G GG G + + + DS + F
Sbjct: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
Query: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
G+ R G GR PRR R+P S+P P +
Sbjct: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
Query: 314 FPRSVPRFPAGFR 326
PRS PR PA R
Sbjct: 216 SPRSDPRDPAAPR 228
Score = 32.7 bits (73), Expect = 0.56
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
Query: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSP-PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
G E + RP PP PR P PGR S + + R +SG R
Sbjct: 99 GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR------ 152
Query: 125 GPRPGCSSARASPAPAA----PQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
G R G + A A T PG + G SG R + + +PS
Sbjct: 153 GDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG---REEEPRRERRQPSLQRST 209
Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLP 206
PP T R+ PR A P P P
Sbjct: 210 PPAPTYSP-RSDPRDPAAPRAGPEAP 234
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 54.7 bits (130), Expect = 1e-07
Identities = 66/209 (31%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP--RPSQHQSGSR 118
P G G P +R P R P P PPG GS P RP + +R
Sbjct: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90
Query: 119 ---LRP---------------------AAPGPRPGCSSARASPAPAAPQAAARTAPGRAA 154
LRP AP P PG SSA A AAP A PG
Sbjct: 91 CLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPG--G 148
Query: 155 SGG----SGPGS-RGQGSDQVGAR-PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208
SGG GPGS RG G+ G R P+ A G P T R +A P G P++
Sbjct: 149 SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEG-PVQ 207
Query: 209 SRPGSGTGARSCGTWGSGGGPGTAAASSP 237
S GT A + G G A + P
Sbjct: 208 SH--HGTPALTQGPQSPRDGAQLGACTRP 234
Score = 33.5 bits (75), Expect = 0.33
Identities = 45/187 (24%), Positives = 52/187 (27%), Gaps = 55/187 (29%)
Query: 129 GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCR- 187
G SA+A P A+ P + G R G GAR +P PL R
Sbjct: 4 GMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP 63
Query: 188 --------------------------RC-RAAPRRSARPFRRP-GLPL-----KSRPGSG 214
RC P R R RRP G PL + P
Sbjct: 64 PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA 123
Query: 215 TGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP 274
G S G PG A A P G GGR G G+
Sbjct: 124 PGRSSALALAGGAAPGVARAQRPG---------------------GSGGRSHPGGPGSPR 162
Query: 275 GCRLLSP 281
G + P
Sbjct: 163 GGGTVGP 169
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 53.9 bits (128), Expect = 2e-07
Identities = 72/247 (29%), Positives = 86/247 (34%), Gaps = 56/247 (22%)
Query: 63 SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
S G S P P PA P P +PP R + S PR GS
Sbjct: 189 SFGGRPKSQPPLPQETAAPA---PQPGPTAPPARPPAYE--SREGPRGRAESRGSGPAQP 243
Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARP---S 175
A P PG + SPAP AP+ APG A P + G VG R
Sbjct: 244 AHLPLPGPAH---SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
Query: 176 RAGGQPPPLTC---RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
RAG PP T RCR RR RR G G G G GT
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRR-----RRRG-------------------GGGEGEGTH 336
Query: 233 AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
A P++ + + G R +G+G++ G +L PP RR L
Sbjct: 337 ATHGPASPPGRRHDEEV----------GAAVLRAGSGEGSRRGLQL---TPPPRRVHGAL 383
Query: 293 TLSFGGG 299
FGGG
Sbjct: 384 Q-RFGGG 389
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 53.9 bits (128), Expect = 2e-07
Identities = 72/247 (29%), Positives = 86/247 (34%), Gaps = 56/247 (22%)
Query: 63 SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
S G S P P PA P P +PP R + S PR GS
Sbjct: 189 SFGGRPKSQPPLPQETAAPA---PQPGPTAPPARPPAYE--SREGPRGRAESRGSGPAQP 243
Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARP---S 175
A P PG + SPAP AP+ APG A P + G VG R
Sbjct: 244 AHLPLPGPAH---SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
Query: 176 RAGGQPPPLTC---RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
RAG PP T RCR RR RR G G G G GT
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRR-----RRRG-------------------GGGEGEGTH 336
Query: 233 AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
A P++ + + G R +G+G++ G +L PP RR L
Sbjct: 337 ATHGPASPPGRRHDEEV----------GAAVLRAGSGEGSRRGLQL---TPPPRRVHGAL 383
Query: 293 TLSFGGG 299
FGGG
Sbjct: 384 Q-RFGGG 389
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 53.9 bits (128), Expect = 2e-07
Identities = 72/247 (29%), Positives = 86/247 (34%), Gaps = 56/247 (22%)
Query: 63 SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
S G S P P PA P P +PP R + S PR GS
Sbjct: 189 SFGGRPKSQPPLPQETAAPA---PQPGPTAPPARPPAYE--SREGPRGRAESRGSGPAQP 243
Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARP---S 175
A P PG + SPAP AP+ APG A P + G VG R
Sbjct: 244 AHLPLPGPAH---SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
Query: 176 RAGGQPPPLTC---RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
RAG PP T RCR RR RR G G G G GT
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRR-----RRRG-------------------GGGEGEGTH 336
Query: 233 AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
A P++ + + G R +G+G++ G +L PP RR L
Sbjct: 337 ATHGPASPPGRRHDEEV----------GAAVLRAGSGEGSRRGLQL---TPPPRRVHGAL 383
Query: 293 TLSFGGG 299
FGGG
Sbjct: 384 Q-RFGGG 389
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 53.9 bits (128), Expect = 2e-07
Identities = 66/289 (22%), Positives = 97/289 (33%), Gaps = 39/289 (13%)
Query: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG 116
G P A P P P P P P G + T + S H +
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPG---PGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212
Query: 117 SRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSR 176
PA G ++ P PAAP +T P A+ P + + A P+
Sbjct: 213 ----PAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA 268
Query: 177 AGGQPPPLTCRRCRAAPRRSARPFRRPGL--PLKSRPGSGTGARSCGTWGSGG------- 227
A PPP R + P P + P ++ G GA +GG
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ 328
Query: 228 -GPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPA-PPR 285
GPG AAA++P+ ++SP+ ++ Q P + L+ + P
Sbjct: 329 PGPG-AAAAAPAPGVKAESPKRVV-------------------QAAPPAAQTLAASGPAS 368
Query: 286 RRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAP 334
+ + G + SP V P P +P+ AG T SL P
Sbjct: 369 TAASMVIGPTMQGALPSPA-AVPPPAPGTPTGLPKGAAGAVTQSLSRTP 416
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/197 (29%), Positives = 65/197 (32%), Gaps = 19/197 (9%)
Query: 60 SPESAAGT----EVSGAPH------PDSRTRPAA----RPPHPRTRSPPGRSGSGTTFSA 105
SP AAG GAP P R RP RP P R P +G +
Sbjct: 66 SPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAK 125
Query: 106 VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPA-PAAPQA-AARTAPGRAASGGSGPG-S 162
+ P P PAA G A A PA PA P A AAR PG G GPG
Sbjct: 126 LRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP--GPGPGPG 183
Query: 163 RGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222
G G G L A LPL GT ++
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPF 243
Query: 223 WGSGGGPGTAAASSPSA 239
G+ P AA S P+A
Sbjct: 244 VGAAAPPAPAAPSPPAA 260
Score = 41.2 bits (95), Expect = 0.002
Identities = 39/118 (33%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 131 SSARASPAPAAPQAAARTAP---------GRAASGGSGPGSRGQGSDQ-----VGARPSR 176
S + A A A P A A AP GRA GG GP G S + G P
Sbjct: 64 SGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA 123
Query: 177 AGGQPPPL----TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG 230
A +PPP +C AA +A P P P K + AR+ G G GPG
Sbjct: 124 AKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG 181
Score = 33.1 bits (74), Expect = 0.43
Identities = 41/149 (27%), Positives = 49/149 (32%), Gaps = 18/149 (12%)
Query: 138 APAAPQ--AAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL-TCRRCRAAPR 194
AP P+ AAA A G GS G+ G G A +PPP R P+
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103
Query: 195 RSARPF-RRPGLP-------LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSP 246
R P RRP +P K RP A SC + +P+ P
Sbjct: 104 RPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP 163
Query: 247 QPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
AL R G G G PG
Sbjct: 164 -------AALAARAGPGPGPGPGPGPGPG 185
Score = 30.0 bits (66), Expect = 3.7
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 225 SGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR-GCGGRRRSNGQGTQPGCRLLSPAP 283
+G GP A +P A +P+P A R R G GG +R + PAP
Sbjct: 71 AGAGPAAPAEGAPGA-----APEP----PPAGRARPGGGGPQRPGPPSPRRPLVPAGPAP 121
Query: 284 PRRRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKP 336
P + R P S G P VA + P PAG + P P
Sbjct: 122 PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGP 174
>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 53.5 bits (127), Expect = 3e-07
Identities = 71/225 (31%), Positives = 86/225 (38%), Gaps = 28/225 (12%)
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPG-SRGQGSDQVGARPSRAGG 179
P+APG G +A A+ + A Q + T + G S G+GS R
Sbjct: 14 PSAPG---GGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGS-------GRDNN 63
Query: 180 QPPPLTCRRCRAAPRRSARPFRR--PGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
PPP RR R P +A RR GL L + PG G A CG G G G A A+
Sbjct: 64 TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRAL-CGPRGWAAGRGEAGATGL 122
Query: 238 SADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFG 297
+ + + GG R G G S GT P LLSP PP L LS
Sbjct: 123 RLSVGAATVRGWA--GGYFRGDGGRGVSESVAVGTGPDFLLLSPPPPPPAEVAELPLS-- 178
Query: 298 GGVSSPTHPVVAPRRHFPRSVPRFPAGF---RTHSLGTAPKPKCW 339
+ P H R PR P P+ R S GT CW
Sbjct: 179 --SAPPLHEEAPGVRGLPRLAPPLPSPLLVRRRESNGT-----CW 216
>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 53.5 bits (127), Expect = 3e-07
Identities = 71/225 (31%), Positives = 86/225 (38%), Gaps = 28/225 (12%)
Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPG-SRGQGSDQVGARPSRAGG 179
P+APG G +A A+ + A Q + T + G S G+GS R
Sbjct: 14 PSAPG---GGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGS-------GRDNN 63
Query: 180 QPPPLTCRRCRAAPRRSARPFRR--PGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
PPP RR R P +A RR GL L + PG G A CG G G G A A+
Sbjct: 64 TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRAL-CGPRGWAAGRGEAGATGL 122
Query: 238 SADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFG 297
+ + + GG R G G S GT P LLSP PP L LS
Sbjct: 123 RLSVGAATVRGWA--GGYFRGDGGRGVSESVAVGTGPDFLLLSPPPPPPAEVAELPLS-- 178
Query: 298 GGVSSPTHPVVAPRRHFPRSVPRFPAGF---RTHSLGTAPKPKCW 339
+ P H R PR P P+ R S GT CW
Sbjct: 179 --SAPPLHEEAPGVRGLPRLAPPLPSPLLVRRRESNGT-----CW 216
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 53.1 bits (126), Expect = 4e-07
Identities = 93/367 (25%), Positives = 119/367 (32%), Gaps = 82/367 (22%)
Query: 67 TEVSGAPHPDSRTRPAARPPHPRTRSPP---------------------------GRSGS 99
T+V G P PA P P + PP GRS
Sbjct: 1114 TKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQ 1173
Query: 100 GTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPA----PAAPQ-----------A 144
G++ A PP + G ++P P P S SP+ PA+P
Sbjct: 1174 GSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFG 1233
Query: 145 AARTAPGRAASGGSGPGSR-------GQGSDQVGARPSRAGGQPPPLTCRRCRAAPRR-- 195
AA R G R D+ G G P R ++
Sbjct: 1234 AALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAAPGPRLRHSKSIDEGMF 1293
Query: 196 SARPFRRPGLPLKSR-PGSGTGARSCGTWGSGGGPGTAAASS---------PSADFSSDS 245
SA P+ R L+S G+G G G+ GGG G++A +S P + D
Sbjct: 1294 SAEPYLR----LESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVHPLTGKALDP 1349
Query: 246 PQPIIIFGGALRVRGCGGRRRSNGQGT-QPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPT 304
P+ G AL R + S G G QP P PP RY P +
Sbjct: 1350 ASPL---GLALAARERALKESSEGGGAPQP-----PPRPPSPRYEAPPPTPHHHSPHAHH 1401
Query: 305 HPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLKPYGS 364
PV+ P R G+R LG+ K S P P A L RL P
Sbjct: 1402 EPVLRLWGASPPDPARRELGYRA-GLGSQEK------SLPASPPAARRSL-LHRLPPTAP 1453
Query: 365 SSGPLLL 371
GPLLL
Sbjct: 1454 GVGPLLL 1460
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/197 (25%), Positives = 70/197 (35%), Gaps = 30/197 (15%)
Query: 83 ARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQ---SGSRLRPAAPGPRPGCSSARASPAP 139
A PPHP G A+ P+PS G P AP P S+ +
Sbjct: 1018 AHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSS 1077
Query: 140 AAPQAAARTAPGRAASGG------SGPGSRGQ--GSDQVGARPSRAGGQP--PPLTCRRC 189
P P RAAS SG G +G +V P + GG P P T
Sbjct: 1078 QGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPAS 1137
Query: 190 RAAPRRSARPFRRPGLP-----LKSRPGSGTGARSCGT------------WGSGGGPGTA 232
P A P + +P +K+ S +G S G+ G GGG G++
Sbjct: 1138 PQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSS 1197
Query: 233 AASSPSADFSSDSPQPI 249
+ +P+ SP P+
Sbjct: 1198 PSPAPAMSPVPPSPSPV 1214
Score = 43.5 bits (101), Expect = 3e-04
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 63 SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
SA G SGAP P S ++ ++P P T + SGT SA PR G+R R
Sbjct: 452 SAPGAASSGAPGPTSGSQGQSQPSAPTT-----KLSSGTLRSASSPR------GARARSP 500
Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARPSRA 177
+ G P + + P++ R P G GP GSRG+ A P R+
Sbjct: 501 SRGRHPEDAKRQPRGRPSS-SGTPREGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRS 558
Score = 42.4 bits (98), Expect = 7e-04
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 106 VPPRPSQHQSGSRLRPAAPGPR--PGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSR 163
VP + S + R P G P A + + A P +APG A+SG GP S
Sbjct: 408 VPFQESPKYAARRRGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASSGAPGPTSG 467
Query: 164 GQGSDQVGARPSR--AGGQPPPLTCRRCRA-APRRSARPFRRPGLPLKSRPGSGTGARS- 219
QG Q A ++ +G + R RA +P R P P + RP S R
Sbjct: 468 SQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQP-RGRPSSSGTPREG 526
Query: 220 -CGTWGSGGGPGTAAAS 235
G G GGPG + S
Sbjct: 527 PAGGTGGSGGPGGSLGS 543
Score = 40.8 bits (94), Expect = 0.002
Identities = 57/222 (25%), Positives = 69/222 (31%), Gaps = 56/222 (25%)
Query: 69 VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTT-----------------------FSA 105
V+ P S P PP PR PP + + F
Sbjct: 1504 VTSGRGPPSEDGPGVPPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAPSVDVEDGEFLF 1563
Query: 106 VPPRP-------SQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGS 158
V P P S + S L P P P P + A A+P P P A AP S S
Sbjct: 1564 VEPLPPPLEFSNSFEKPESPLTPGPPHPLPD-TPAPATPLPPVPPPAVAAAPPTLDSTAS 1622
Query: 159 GPGSRGQGSDQVGARPSRAGGQP----PPLTCRRCRAAPRRSARPFRRPGL--------- 205
S + S A G P PP AAP+ P PG
Sbjct: 1623 SLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGPDP--PPGTDSGIEEVDS 1680
Query: 206 ------PLKSRPGSGT----GARSCGTWGSGGGPGTAAASSP 237
PL++ + T A G+ G GGG G AS P
Sbjct: 1681 RSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGP 1722
Score = 39.7 bits (91), Expect = 0.005
Identities = 41/145 (28%), Positives = 51/145 (35%), Gaps = 22/145 (15%)
Query: 83 ARPPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLRPAAPG--------------P 126
A PP P R R+G G+ ++P P ++ RL P APG P
Sbjct: 1410 ASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAP 1469
Query: 127 RPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
PG S S AP P+ P + G+G PS G PP +
Sbjct: 1470 HPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTSGRGP------PSEDGPGVPPPSP 1523
Query: 187 RRCRAAPRRSARPFRRPGLPLKSRP 211
RR S R GLPL P
Sbjct: 1524 RRSVPPSPTSPRASEENGLPLLVLP 1548
Score = 32.0 bits (71), Expect = 0.96
Identities = 55/226 (24%), Positives = 70/226 (30%), Gaps = 31/226 (13%)
Query: 81 PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP----GPRP---GCSSA 133
P PP P +PP S SG + P SG L ++P GP P S
Sbjct: 924 PTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSR 983
Query: 134 RASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
S + P A P + P P G P R P
Sbjct: 984 EKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGP 1043
Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
+ S R +R G P GA S GS GG G ++ P+ + P+
Sbjct: 1044 QPSLRGWRGGG------PSPTPGAPSPSHHGSAGG-GGGSSQGPALRYFQLPPRAA---S 1093
Query: 254 GALRVRGCGGRRR--------------SNGQGTQPGCRLLSPAPPR 285
A+ V GR R G G P SPA P+
Sbjct: 1094 AAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQ 1139
Score = 30.8 bits (68), Expect = 2.1
Identities = 55/213 (25%), Positives = 64/213 (30%), Gaps = 56/213 (26%)
Query: 71 GAPHPDSRTRPAA---RPPHPRTRSPPG----------RSGSGTTFSAVPPRPSQHQSGS 117
G PHP PAA P P PPG RS S + S + S
Sbjct: 1643 GDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETI----SSASTLS 1698
Query: 118 RLRPAAPGPRPGCSSARASPA--PAAPQAAARTAPGRAASGGSGPGS------------R 163
L G G A A A P G+A G S PG R
Sbjct: 1699 SLSAEGGGSAGGGGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLR 1758
Query: 164 GQG-SDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGT----GAR 218
G+ G RP +GG P+T P P S G+GT R
Sbjct: 1759 GRALGASGGLRPGPSGGLRDPVT-----------------PTSPTVSVTGAGTDGLLALR 1801
Query: 219 SCG---TWGSGGGPGTAAASSPSADFSSDSPQP 248
+C T G GGP P + S P
Sbjct: 1802 ACSGPPTAGVAGGPVAVEPEVPPVPLPTASSLP 1834
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 52.8 bits (125), Expect = 5e-07
Identities = 67/254 (26%), Positives = 80/254 (31%), Gaps = 50/254 (19%)
Query: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR-- 127
+GA P+ P P P + P G SG+ T + S G P PGPR
Sbjct: 380 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439
Query: 128 PGCSSA------------------------RASPAPAAPQAA-----------ARTAPGR 152
PG A + P PA PQ A AR PG
Sbjct: 440 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 499
Query: 153 AASGG-----SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLP- 206
G PG+RG A P A G+ P + A RP PGLP
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP-GEPGLPG 558
Query: 207 ---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGG 263
L RPG A G G G PG P + ++ F G G G
Sbjct: 559 ARGLTGRPGD---AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPG 615
Query: 264 RRRSNGQGTQPGCR 277
+ G PG R
Sbjct: 616 KAGEKGLPGAPGLR 629
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/224 (27%), Positives = 73/224 (32%), Gaps = 35/224 (15%)
Query: 71 GAPHPDSRTRPAARPPHPRTRSPPGRSGS---GTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
GAP P R P +P PPG G G F+A ++G GP
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 203
Query: 128 PGCSSARASPAPA---APQAAARTAPGRAASGGSGP-GSRG-------QGSDQVGARPSR 176
G R P PA PQ G SGP G RG G D +P +
Sbjct: 204 -GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 177 AGGQPPPLTCRRCRAAPRRSARPF-RRPGLP----LKSRPGSGTGARSCGTWGSGGGPGT 231
AG + PP + AR F PGLP + PG G G G PG
Sbjct: 263 AGERGPP---------GPQGARGFPGTPGLPGVKGHRGYPGLD------GAKGEAGAPGV 307
Query: 232 AAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
S + S P G G G + G QPG
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351
Score = 46.6 bits (109), Expect = 4e-05
Identities = 56/226 (24%), Positives = 66/226 (29%), Gaps = 25/226 (11%)
Query: 71 GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
G+P P P P T P G SG A P Q G R GP+
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK--- 764
Query: 131 SSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
R P+ A GR +G GP + + G G P P R
Sbjct: 765 -GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG-----EVGPPGPAGSAGAR 818
Query: 191 AAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PI 249
AP PG+ + G G G G A A P + PQ P
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 878
Query: 250 IIFG-----------GALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
+ G GA G GR G PG P PP
Sbjct: 879 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG----PPGPP 920
Score = 42.0 bits (97), Expect = 0.001
Identities = 61/255 (23%), Positives = 82/255 (32%), Gaps = 40/255 (15%)
Query: 57 GTFSPESAAGTE----VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQ 112
G P+ A G + +G P R P +P PPG SG P+ ++
Sbjct: 879 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGAR 932
Query: 113 HQSGSRLRPAAPGPR-----------PGCSSARASPAPAAPQAAARTA-----PGRAASG 156
SG R PG + PG + P PQ A PG+
Sbjct: 933 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGER 992
Query: 157 GSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRC---------RAAPRRSARPFRRPGL 205
G PG G+ Q S G P P+ +P P R
Sbjct: 993 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA 1052
Query: 206 PLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PIIIFG--GALRVRGCG 262
+K G + G G G PG A + D Q P+ G GA ++G
Sbjct: 1053 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1112
Query: 263 GRRRSNGQGTQPGCR 277
G R G+ +PG R
Sbjct: 1113 GPRGDKGEAGEPGER 1127
Score = 37.7 bits (86), Expect = 0.018
Identities = 75/285 (26%), Positives = 90/285 (31%), Gaps = 68/285 (23%)
Query: 55 ERGTFSPESAAGTE-VSGAPHPDSRTRPA-----ARPP----HPRTRSPPGRSGSGTTFS 104
E+G P AG+ GAP T P A PP P + G +G
Sbjct: 802 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 861
Query: 105 AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAP------------- 150
A P+ G + GP+ G A+ P A P AA R P
Sbjct: 862 APGPQGPSGAPGPQGPTGVTGPK-GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920
Query: 151 -------GRAASGGSGP-------------GSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
+ A G SGP G G+ + PS A G P P R
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980
Query: 191 A----APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG-------TAAASSPSA 239
+R R F PGLP S GA G G G PG T A P
Sbjct: 981 GIVGLPGQRGERGF--PGLPGPSGEPGKQGAP--GASGDRGPPGPVGPPGLTGPAGEPGR 1036
Query: 240 DFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
+ S + P G A G G R G PG +P PP
Sbjct: 1037 EGSPGADGPPGRDGAA----GVKGDRGETGAVGAPG----APGPP 1073
Score = 32.3 bits (72), Expect = 0.74
Identities = 57/242 (23%), Positives = 71/242 (29%), Gaps = 36/242 (14%)
Query: 55 ERGTFSPESAAGTEVS----------GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFS 104
ERG P+ A G + G P D A P PG +GS
Sbjct: 265 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 324
Query: 105 A---------VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAAS 155
P + G+ +P GP A P AP A P A
Sbjct: 325 PRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 384
Query: 156 GGSGPGSRGQGSDQVGARPSRAGGQPPP---LTCRRCRAAPRRSARPFRRPGLPLKSRPG 212
G RG+ P+ A G P + AP + PG P P
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG----APGFPGPRGPP 440
Query: 213 SGTGARS-CGTWGSGGGPGTA---AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSN 268
GA G G G PG A P + PQ GA G G+R +
Sbjct: 441 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ------GAPGPAGEEGKRGAR 494
Query: 269 GQ 270
G+
Sbjct: 495 GE 496
Score = 28.9 bits (63), Expect = 8.1
Identities = 35/127 (27%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 55 ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPR-TRSPPGRSG-SGTTFSAVPPRPSQ 112
ERG G + P S + A+ P P R PPG G SG + P P
Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1185
Query: 113 HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
G R R GP + +P P P +A G GP +G Q
Sbjct: 1186 -PPGPRGRSGETGP----AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMR 1240
Query: 173 RPSRAGG 179
AGG
Sbjct: 1241 ADQAAGG 1247
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 52.8 bits (125), Expect = 5e-07
Identities = 67/254 (26%), Positives = 80/254 (31%), Gaps = 50/254 (19%)
Query: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR-- 127
+GA P+ P P P + P G SG+ T + S G P PGPR
Sbjct: 311 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370
Query: 128 PGCSSA------------------------RASPAPAAPQAA-----------ARTAPGR 152
PG A + P PA PQ A AR PG
Sbjct: 371 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 430
Query: 153 AASGG-----SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLP- 206
G PG+RG A P A G+ P + A RP PGLP
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP-GEPGLPG 489
Query: 207 ---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGG 263
L RPG A G G G PG P + ++ F G G G
Sbjct: 490 ARGLTGRPGD---AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPG 546
Query: 264 RRRSNGQGTQPGCR 277
+ G PG R
Sbjct: 547 KAGEKGLPGAPGLR 560
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/224 (27%), Positives = 73/224 (32%), Gaps = 35/224 (15%)
Query: 71 GAPHPDSRTRPAARPPHPRTRSPPGRSGS---GTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
GAP P R P +P PPG G G F+A ++G GP
Sbjct: 75 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 134
Query: 128 PGCSSARASPAPA---APQAAARTAPGRAASGGSGP-GSRG-------QGSDQVGARPSR 176
G R P PA PQ G SGP G RG G D +P +
Sbjct: 135 -GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193
Query: 177 AGGQPPPLTCRRCRAAPRRSARPF-RRPGLP----LKSRPGSGTGARSCGTWGSGGGPGT 231
AG + PP + AR F PGLP + PG G G G PG
Sbjct: 194 AGERGPP---------GPQGARGFPGTPGLPGVKGHRGYPGLD------GAKGEAGAPGV 238
Query: 232 AAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
S + S P G G G + G QPG
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 282
Score = 46.6 bits (109), Expect = 4e-05
Identities = 56/226 (24%), Positives = 66/226 (29%), Gaps = 25/226 (11%)
Query: 71 GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
G+P P P P T P G SG A P Q G R GP+
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK--- 695
Query: 131 SSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
R P+ A GR +G GP + + G G P P R
Sbjct: 696 -GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG-----EVGPPGPAGSAGAR 749
Query: 191 AAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PI 249
AP PG+ + G G G G A A P + PQ P
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 809
Query: 250 IIFG-----------GALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
+ G GA G GR G PG P PP
Sbjct: 810 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG----PPGPP 851
Score = 42.0 bits (97), Expect = 0.001
Identities = 61/255 (23%), Positives = 82/255 (32%), Gaps = 40/255 (15%)
Query: 57 GTFSPESAAGTE----VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQ 112
G P+ A G + +G P R P +P PPG SG P+ ++
Sbjct: 810 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGAR 863
Query: 113 HQSGSRLRPAAPGPR-----------PGCSSARASPAPAAPQAAARTA-----PGRAASG 156
SG R PG + PG + P PQ A PG+
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGER 923
Query: 157 GSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRC---------RAAPRRSARPFRRPGL 205
G PG G+ Q S G P P+ +P P R
Sbjct: 924 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA 983
Query: 206 PLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PIIIFG--GALRVRGCG 262
+K G + G G G PG A + D Q P+ G GA ++G
Sbjct: 984 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1043
Query: 263 GRRRSNGQGTQPGCR 277
G R G+ +PG R
Sbjct: 1044 GPRGDKGEAGEPGER 1058
Score = 37.7 bits (86), Expect = 0.018
Identities = 75/285 (26%), Positives = 90/285 (31%), Gaps = 68/285 (23%)
Query: 55 ERGTFSPESAAGTE-VSGAPHPDSRTRPA-----ARPP----HPRTRSPPGRSGSGTTFS 104
E+G P AG+ GAP T P A PP P + G +G
Sbjct: 733 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 792
Query: 105 AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAP------------- 150
A P+ G + GP+ G A+ P A P AA R P
Sbjct: 793 APGPQGPSGAPGPQGPTGVTGPK-GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851
Query: 151 -------GRAASGGSGP-------------GSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
+ A G SGP G G+ + PS A G P P R
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911
Query: 191 A----APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG-------TAAASSPSA 239
+R R F PGLP S GA G G G PG T A P
Sbjct: 912 GIVGLPGQRGERGF--PGLPGPSGEPGKQGAP--GASGDRGPPGPVGPPGLTGPAGEPGR 967
Query: 240 DFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
+ S + P G A G G R G PG +P PP
Sbjct: 968 EGSPGADGPPGRDGAA----GVKGDRGETGAVGAPG----APGPP 1004
Score = 32.3 bits (72), Expect = 0.74
Identities = 57/242 (23%), Positives = 71/242 (29%), Gaps = 36/242 (14%)
Query: 55 ERGTFSPESAAGTEVS----------GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFS 104
ERG P+ A G + G P D A P PG +GS
Sbjct: 196 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 255
Query: 105 A---------VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAAS 155
P + G+ +P GP A P AP A P A
Sbjct: 256 PRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 315
Query: 156 GGSGPGSRGQGSDQVGARPSRAGGQPPP---LTCRRCRAAPRRSARPFRRPGLPLKSRPG 212
G RG+ P+ A G P + AP + PG P P
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG----APGFPGPRGPP 371
Query: 213 SGTGARS-CGTWGSGGGPGTA---AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSN 268
GA G G G PG A P + PQ GA G G+R +
Sbjct: 372 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ------GAPGPAGEEGKRGAR 425
Query: 269 GQ 270
G+
Sbjct: 426 GE 427
Score = 28.9 bits (63), Expect = 8.1
Identities = 35/127 (27%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 55 ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPR-TRSPPGRSG-SGTTFSAVPPRPSQ 112
ERG G + P S + A+ P P R PPG G SG + P P
Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1116
Query: 113 HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
G R R GP + +P P P +A G GP +G Q
Sbjct: 1117 -PPGPRGRSGETGP----AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMR 1171
Query: 173 RPSRAGG 179
AGG
Sbjct: 1172 ADQAAGG 1178
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 52.8 bits (125), Expect = 5e-07
Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)
Query: 54 LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
L +FS S++ +S A P+ AA P+ S S G P P +
Sbjct: 47 LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
Query: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
S + P P P P S PAP+A + P A G G
Sbjct: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
Query: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
G+G Q PS A P P TC RA P R A PG G+G R CG
Sbjct: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 52.8 bits (125), Expect = 5e-07
Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)
Query: 54 LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
L +FS S++ +S A P+ AA P+ S S G P P +
Sbjct: 47 LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
Query: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
S + P P P P S PAP+A + P A G G
Sbjct: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
Query: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
G+G Q PS A P P TC RA P R A PG G+G R CG
Sbjct: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 52.8 bits (125), Expect = 5e-07
Identities = 76/253 (30%), Positives = 93/253 (36%), Gaps = 53/253 (20%)
Query: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
Query: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
R R PL +R G R G G G + + + DS + F
Sbjct: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
Query: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
G+ R G GR PRR R+P S+P P +
Sbjct: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
Query: 314 FPRSVPRFPAGFR 326
PRS PR PA R
Sbjct: 216 SPRSDPRDPAAPR 228
Score = 32.0 bits (71), Expect = 0.96
Identities = 39/142 (27%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
Query: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSP-PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
G E + RP PP PR P PGR S + + R +SG R
Sbjct: 99 GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDS 158
Query: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
G G ++ ++ A T PG + G SG R + + +PS PP
Sbjct: 159 GWSHGHTARVGGTGDSS--AGLTTFPGSSRGGFSG---REEEPRRERRQPSLQRSTPPAP 213
Query: 185 TCRRCRAAPRRSARPFRRPGLP 206
T R+ PR A P P P
Sbjct: 214 TYSP-RSDPRDPAAPRAGPEAP 234
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 52.4 bits (124), Expect = 7e-07
Identities = 94/308 (30%), Positives = 109/308 (35%), Gaps = 70/308 (22%)
Query: 93 PPGRSGSGTTF------SAVPPRPSQHQSGSRLRPAAPGPR------PGCSSARASPAPA 140
P SGS TT A PS+ + SR R A G R PG A ++PAP+
Sbjct: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
Query: 141 APQAAARTAPGRA---------ASGGSGPGSRG--QGSDQVGARPSRAGGQ---PPPLTC 186
Q+ AP A ASGG G S + G R SRAG + P L
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCP 188
Query: 187 RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAA----SSPSADFS 242
+ R R R GL S GSGT W GG A A S A
Sbjct: 189 LKLRKGSSR-----RCQGLG-SSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPG 242
Query: 243 SDSPQPIIIFG-GALRVRGCGG---RRRSNGQGTQPGCRLLSPAPPRRRYRK-------- 290
S P ++ G R RG GG +R S G R L P P R R K
Sbjct: 243 STLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTL-PTPSRARPGKPAPRGSAP 301
Query: 291 PLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGT----------APKPKCWK 340
P L GGG S T V + R THS+GT AP+P
Sbjct: 302 PARLRGGGGGSGLTQLVGSGR-----------GSGVTHSVGTHALATRRGSRAPRPVGVL 350
Query: 341 HSQPWHRP 348
P RP
Sbjct: 351 RGVPHFRP 358
Score = 42.4 bits (98), Expect = 7e-04
Identities = 68/239 (28%), Positives = 81/239 (33%), Gaps = 46/239 (19%)
Query: 7 GPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSR-KSRLERGTFSPESAA 65
G G+ G RAC G + S+ C TR+R ++R FS S+
Sbjct: 224 GAAGARAQVRGSEKRACPG--STLPPSSVLAGCVG-----TRARGHGGVQRQRFSAPSSH 276
Query: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSPPGR-----SGSGTTF-------SAVPPRPSQH 113
T P P SR RP P PR +PP R GSG T S V H
Sbjct: 277 STGARTLPTP-SRARPGK--PAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333
Query: 114 QSGSRLRPAAPGP----------RPGCSSARASPAPAAPQAAA------------RTAPG 151
+R AP P RP S A SP P +P A AP
Sbjct: 334 ALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSP-PRSPSVRAFGPRLGAGRLSCPQAPR 392
Query: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSR 210
AA G + D G R GG P RR R + P+R L L R
Sbjct: 393 AAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWRTQTLSLLRR 451
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.0 bits (123), Expect = 9e-07
Identities = 67/252 (26%), Positives = 88/252 (34%), Gaps = 46/252 (18%)
Query: 57 GTFSPESAAGTE-VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQS 115
G P A G + +GA P T PA P P G +G PR S+
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG------PRGSEGPQ 367
Query: 116 GSRLRPAAPGP--------------RPGCSSARASPAPA-APQAAARTAPGRAASGGSGP 160
G R P PGP +PG A +P A AP P G P
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Query: 161 GSRGQGSDQVGARPSR----AGGQPPPLTCR----RCRAAPRRSARPFRRP-GLPLKSRP 211
G +G S + GA S+ A G+P P+ + +R AR P GLP
Sbjct: 428 GPKG-NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGE 486
Query: 212 GSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQG 271
G G+R G G G A P+ + S P +G G G+
Sbjct: 487 RGGPGSR-----GFPGADGVAGPKGPAGERGSPGP---------AGPKGSPGEAGRPGEA 532
Query: 272 TQPGCRLLSPAP 283
PG + L+ +P
Sbjct: 533 GLPGAKGLTGSP 544
Score = 48.1 bits (113), Expect = 1e-05
Identities = 63/243 (25%), Positives = 78/243 (32%), Gaps = 55/243 (22%)
Query: 55 ERGTFSPESAAG----------------TEVSGAPHPDSRTRPAARPPHPRTRSPPGRSG 98
ERG P+ A G + + GA P P P PG+ G
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 302
Query: 99 SGTTFSAVPPRPSQHQSGSRLRPAAPGP-----RPGCSSARASPAPAAPQAAARTAPGRA 153
PR G R RP APGP G + A P P P
Sbjct: 303 ---------PRGLP---GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 350
Query: 154 ASGGSGP-GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG 212
A G +GP G RG Q G R G+P P P +A P PG +PG
Sbjct: 351 AKGEAGPQGPRGSEGPQ-GVR-----GEPGP-------PGPAGAAGPAGNPG--ADGQPG 395
Query: 213 SGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGT 272
+ + G G+ G PG S P P+ G G G + G
Sbjct: 396 AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPK------GNSGEPGAPGSKGDTGAKG 449
Query: 273 QPG 275
+PG
Sbjct: 450 EPG 452
Score = 48.1 bits (113), Expect = 1e-05
Identities = 66/250 (26%), Positives = 82/250 (32%), Gaps = 40/250 (16%)
Query: 61 PESAAGTEVSGAPHPDSRTRP---AARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGS 117
P + T G+P PD +T P A + P PPG G P+ + + G
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594
Query: 118 RLRPAAPGP--------RPGCSSARASPAPAAPQAAARTAPGRAASGGSG--PGSRGQGS 167
PGP + G + A+ P PA P A R G A S G PG G
Sbjct: 595 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP-AGERGEQGPAGSPGFQGLPGPAGPPG 653
Query: 168 DQVGARPSRAG-----GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGT------- 215
+ +P G G P P R R P R + P P R +G
Sbjct: 654 E--AGKPGEQGVPGDLGAPGPSGARGERGFP--GERGVQGPPGPAGPRGANGAPGNDGAK 709
Query: 216 -GARSCGTWGSGGGPG---------TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRR 265
A + G GS G PG A P D P+ G VRG G
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPI 769
Query: 266 RSNGQGTQPG 275
G PG
Sbjct: 770 GPPGPAGAPG 779
Score = 47.4 bits (111), Expect = 2e-05
Identities = 61/219 (27%), Positives = 75/219 (34%), Gaps = 31/219 (14%)
Query: 55 ERGTFSPESAAGTE-VSGAPHPDSRTRPAARPPHPRTRSPPGRSGS-GTTFSAVPPRPSQ 112
ERG P AG +GAP D A P P ++ PG G G +A P P
Sbjct: 684 ERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 743
Query: 113 HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
+ + P PG R P P PG A + PG +G+ A
Sbjct: 744 DRGDAG--PKGADGSPGKDGVRGLTGPIGP-------PGPAGA----PGDKGESGPSGPA 790
Query: 173 RPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
P+ A G P R P A PG +PG+ G G G PG A
Sbjct: 791 GPTGARGAPGD----RGEPGPPGPAGFAGPPG--ADGQPGAKGEPGDAGAKGDAGPPGPA 844
Query: 233 AASSPSADFSSDSPQPIIIFG--GALRVRGCGGRRRSNG 269
+ P P PI G GA RG G + G
Sbjct: 845 GPAGP--------PGPIGNVGAPGAKGARGSAGPPGATG 875
Score = 46.6 bits (109), Expect = 4e-05
Identities = 66/239 (27%), Positives = 76/239 (31%), Gaps = 38/239 (15%)
Query: 55 ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGS-GTTFSAVPPRPSQH 113
E G P G G P + A +P P R PPG G+ G +A P H
Sbjct: 210 EPGASGPMGPRGPP--GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGH 267
Query: 114 QSGSRL-------RPAAPGPRPGCSSARASPAPAAPQAAARTAPG-RAASGGSGP-GSRG 164
+ S L PA P PG +P P R PG R G GP G+RG
Sbjct: 268 RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP----RGLPGERGRPGAPGPAGARG 323
Query: 165 -QGSDQVGARPSRAGGQPPPLTCRRCRA-------APRRSARPFRRPGLPLKSRPGSGTG 216
G+ P G PP A PR S P G P PG
Sbjct: 324 NDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP--GPPGPAGA 381
Query: 217 ARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
A G G+ G PG A+ GA G G G G PG
Sbjct: 382 AGPAGNPGADGQPGAKGANGAPG------------IAGAPGFPGARGPSGPQGPGGPPG 428
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/214 (27%), Positives = 71/214 (33%), Gaps = 47/214 (21%)
Query: 61 PESAAGTEVS----GAPHPDSRTRPAARPPHPRTRSPPGRSG----------------SG 100
P+ AAG G P P PA + + PPG +G G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG 644
Query: 101 TTFSAVPP----RPSQHQSGSRLRPAAPGPR--------PGCSSARASPAPAAPQAAART 148
A PP +P + L APGP PG + P PA P+ A
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDL--GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702
Query: 149 APGRAASGGSG-PGSRG-QGSDQVGARPSRAG--GQPPPLTCRRCRAAPRRSARPFRRPG 204
A G +G PG+ G QG+ + P G G P P R A P G
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP-------KGDRGDAGPKGADG 755
Query: 205 LPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPS 238
P K TG G G G PG S PS
Sbjct: 756 SPGKDGVRGLTG--PIGPPGPAGAPGDKGESGPS 787
Score = 42.7 bits (99), Expect = 5e-04
Identities = 60/220 (27%), Positives = 72/220 (32%), Gaps = 17/220 (7%)
Query: 71 GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR--P 128
GAP P P P PG SG P G +P PG R P
Sbjct: 194 GAPGPQGFQGPPGEP------GEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP 247
Query: 129 GCSSARASPAPAA--PQAAARTAPG-RAASGGSGP-GSRGQ-GSDQVGARPSRAGGQPPP 183
G AR P A R G A G +GP G +G+ GS P + G P
Sbjct: 248 GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG--PRG 305
Query: 184 LTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSS 243
L R R A G + P TG G G G G + P S
Sbjct: 306 LPGERGRPGAPGPAGARGNDGATGAAGPPGPTG--PAGPPGFPGAVGAKGEAGPQGPRGS 363
Query: 244 DSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAP 283
+ PQ + G G G + G QPG + + AP
Sbjct: 364 EGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
Score = 42.0 bits (97), Expect = 0.001
Identities = 55/209 (26%), Positives = 69/209 (33%), Gaps = 19/209 (9%)
Query: 39 CSSGTCRLTRSRKSRLE--RGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGR 96
C G+ T + +E +G P G +G P D P P PPG
Sbjct: 95 CPDGSESPTDQETTGVEGPKGDTGPRGPRGP--AGPPGRDGIPGQPGLPGPPGPPGPPGP 152
Query: 97 SGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP---AAPQAAARTAPGRA 153
G G F+ P + S + PGP G S R P P PQ
Sbjct: 153 PGLGGNFA--PQLSYGYDEKSTGGISVPGPM-GPSGPRGLPGPPGAPGPQGFQGPPGEPG 209
Query: 154 ASGGSGP-GSRG-------QGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGL 205
G SGP G RG G D +P R G + PP + R P + P +
Sbjct: 210 EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP-GPQGARGLPGTAGLPGMKGHR 268
Query: 206 PLKSRPGSGTGARSCGTWGSGGGPGTAAA 234
G+ A G G G PG A
Sbjct: 269 GFSGLDGAKGDAGPAGPKGEPGSPGENGA 297
Score = 41.6 bits (96), Expect = 0.001
Identities = 68/244 (27%), Positives = 76/244 (31%), Gaps = 69/244 (28%)
Query: 55 ERGTFSPESAAG-TEVSGAPHPDSRTRPAARPPHPRT-RSPPGRSG----------SGTT 102
++G P AG T GAP R P PP P PPG G +G
Sbjct: 780 DKGESGPSGPAGPTGARGAP--GDRGEPG--PPGPAGFAGPPGADGQPGAKGEPGDAGAK 835
Query: 103 FSAVPPRPSQHQSGSRLRPAAP-GP-----RPGCSSARASPAPAA----PQAAARTAPGR 152
A PP P+ PA P GP PG AR S P P AA R P
Sbjct: 836 GDAGPPGPAG--------PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Query: 153 AASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPG-LPLKSRP 211
+ PG G + G PR P RPG + P
Sbjct: 888 PSGNAGPPGPPGPAGKEGG-------------------KGPRGETGPAGRPGEVGPPGPP 928
Query: 212 GSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQG 271
G S G G G PGT PQ I G V G G+R G
Sbjct: 929 GPAGEKGSPGADGPAGAPGT------------PGPQGI---AGQRGVVGLPGQRGERGFP 973
Query: 272 TQPG 275
PG
Sbjct: 974 GLPG 977
Score = 40.4 bits (93), Expect = 0.003
Identities = 60/234 (25%), Positives = 77/234 (32%), Gaps = 29/234 (12%)
Query: 55 ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQ 114
E G P A+G G P P A P PG GS + + + +
Sbjct: 981 EPGKQGPSGASGER--GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
Query: 115 SGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQV 170
+G PA P PG A +P P P + +G +GP G+RG Q
Sbjct: 1039 TG----PAGP---PGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG 1091
Query: 171 GARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG 230
G+ + R P PG P + P +G G G PG
Sbjct: 1092 PRGDKGETGEQGDRGIKGHRGFSGLQGPP-GPPGSPGEQGPSGASGPA-----GPRGPPG 1145
Query: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
+A A P D + P PI G RG G G PG P PP
Sbjct: 1146 SAGA--PGKDGLNGLPGPI----GPPGPRGRTGDAGPVGPPGPPG----PPGPP 1189
Score = 38.5 bits (88), Expect = 0.010
Identities = 61/226 (26%), Positives = 69/226 (30%), Gaps = 46/226 (20%)
Query: 60 SPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRL 119
SP A +G P T P PPG +G Q G
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG---------------QDG--- 563
Query: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGG--SGPGSRGQGSDQVGARPSRA 177
RP PGP PG P+ AA PG+A G PG+ G + A
Sbjct: 564 RPGPPGP-PGARGQAGVMGFPGPKGAA-GEPGKAGERGVPGPPGAVGP-----AGKDGEA 616
Query: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
G Q PP A R P PG + PG G G G PG A P
Sbjct: 617 GAQGPPGPAG--PAGERGEQGPAGSPG--FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 672
Query: 238 SADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAP 283
S GA RG G R G G R + AP
Sbjct: 673 S---------------GARGERGFPGERGVQGPPGPAGPRGANGAP 703
Score = 29.3 bits (64), Expect = 6.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 71 GAPHPDSRTR---PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQ--HQSGSRLR 120
G P P RT P P P PPG +G FS +P P + H G R
Sbjct: 1163 GPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYR 1217
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 52.0 bits (123), Expect = 9e-07
Identities = 86/304 (28%), Positives = 107/304 (35%), Gaps = 70/304 (23%)
Query: 73 PHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSS 132
PHP S RP+A PPGR GSG P + + Q S P +S
Sbjct: 168 PHPQSFRRPSAH--------PPGR-GSGRVPRGQPEQQAWEQRSSHFL----APEGSVAS 214
Query: 133 ARASPAPA-APQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRA 191
S PA AP+ A R AA GSRG+G + RP+ G P R A
Sbjct: 215 LLPSAKPARAPRPAPRAREEAAA------GSRGRGGAE---RPAARGSAQQPPLARLLLA 265
Query: 192 APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA---------AASSPSADFS 242
+ A R PL+ R GS + R P + A SP+
Sbjct: 266 SAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPA---G 322
Query: 243 SDSPQPIIIFGGALRVRGCGGRRRSNGQ-----GTQPGCRLLSP-------APPR----- 285
P P + G V G RRR G+ G + GC L SP AP R
Sbjct: 323 HGLPLPRSLSRGGEVV---GARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERR 379
Query: 286 --RRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTA--PKPKCWKH 341
R++RK GGG P V+PR R R T P P W+
Sbjct: 380 AARQWRKR-----GGG------PGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQG 428
Query: 342 SQPW 345
P+
Sbjct: 429 GAPY 432
Score = 45.4 bits (106), Expect = 8e-05
Identities = 74/273 (27%), Positives = 95/273 (34%), Gaps = 58/273 (21%)
Query: 62 ESAAGTEVSGAPHPDSRTRPAARPPHPR-------------TRSPPG---RSGSGTTFSA 105
E+AAG+ G + A +PP R RSPP R GS A
Sbjct: 234 EAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGS-----A 288
Query: 106 VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQ 165
PPR + +GSR +P PR A SP A G P S +
Sbjct: 289 SPPRLAAPLAGSRAPSLSPFPRRCRRRAERSP---------------AGHGLPLPRSLSR 333
Query: 166 GSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPL-KSRPGSGTGARSCGTWG 224
G + VGAR R G + RR R RR P +P + PG R+ W
Sbjct: 334 GGEVVGARRRRGGEE------RRVRG--RRQGCALGSPPIPAGPAAPGRAGERRAARQWR 385
Query: 225 S-GGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGC--RLLSP 281
GGGPG + + P R RG R + Q G R +
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTP--------RARGSSTCLRPSPATWQGGAPYRAIFA 437
Query: 282 APPRRRYRKPLTLSFGGG--VSSPTHPVVAPRR 312
A PR GG S+PT+ ++ RR
Sbjct: 438 AGPRLSAPSAEAEEVPGGHTASNPTYEPLSSRR 470
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 52.0 bits (123), Expect = 9e-07
Identities = 86/304 (28%), Positives = 107/304 (35%), Gaps = 70/304 (23%)
Query: 73 PHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSS 132
PHP S RP+A PPGR GSG P + + Q S P +S
Sbjct: 168 PHPQSFRRPSAH--------PPGR-GSGRVPRGQPEQQAWEQRSSHFL----APEGSVAS 214
Query: 133 ARASPAPA-APQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRA 191
S PA AP+ A R AA GSRG+G + RP+ G P R A
Sbjct: 215 LLPSAKPARAPRPAPRAREEAAA------GSRGRGGAE---RPAARGSAQQPPLARLLLA 265
Query: 192 APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA---------AASSPSADFS 242
+ A R PL+ R GS + R P + A SP+
Sbjct: 266 SAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPA---G 322
Query: 243 SDSPQPIIIFGGALRVRGCGGRRRSNGQ-----GTQPGCRLLSP-------APPR----- 285
P P + G V G RRR G+ G + GC L SP AP R
Sbjct: 323 HGLPLPRSLSRGGEVV---GARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERR 379
Query: 286 --RRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTA--PKPKCWKH 341
R++RK GGG P V+PR R R T P P W+
Sbjct: 380 AARQWRKR-----GGG------PGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQG 428
Query: 342 SQPW 345
P+
Sbjct: 429 GAPY 432
Score = 45.4 bits (106), Expect = 8e-05
Identities = 74/273 (27%), Positives = 95/273 (34%), Gaps = 58/273 (21%)
Query: 62 ESAAGTEVSGAPHPDSRTRPAARPPHPR-------------TRSPPG---RSGSGTTFSA 105
E+AAG+ G + A +PP R RSPP R GS A
Sbjct: 234 EAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGS-----A 288
Query: 106 VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQ 165
PPR + +GSR +P PR A SP A G P S +
Sbjct: 289 SPPRLAAPLAGSRAPSLSPFPRRCRRRAERSP---------------AGHGLPLPRSLSR 333
Query: 166 GSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPL-KSRPGSGTGARSCGTWG 224
G + VGAR R G + RR R RR P +P + PG R+ W
Sbjct: 334 GGEVVGARRRRGGEE------RRVRG--RRQGCALGSPPIPAGPAAPGRAGERRAARQWR 385
Query: 225 S-GGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGC--RLLSP 281
GGGPG + + P R RG R + Q G R +
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTP--------RARGSSTCLRPSPATWQGGAPYRAIFA 437
Query: 282 APPRRRYRKPLTLSFGGG--VSSPTHPVVAPRR 312
A PR GG S+PT+ ++ RR
Sbjct: 438 AGPRLSAPSAEAEEVPGGHTASNPTYEPLSSRR 470
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 52.0 bits (123), Expect = 9e-07
Identities = 60/199 (30%), Positives = 73/199 (36%), Gaps = 45/199 (22%)
Query: 77 SRTRPAARPP------HPRTRSPPGR-------SGSGTTFSAVPPRPSQHQSGSRLRPA- 122
++ PA +PP P S PG SG+ T+ A P P+ S RPA
Sbjct: 154 NQAAPAQKPPGRRLFPEPLPPSSPGFRPSSYPCSGASTSSQATQPGPALLSHASEARPAT 213
Query: 123 --------------APGPRPGCSSARASPAPAAPQAAARTAPGR-AASGGSGPGSRGQGS 167
A GP P A P PA P A P R + GP RG+ S
Sbjct: 214 RSRITLVASALRRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRGRAS 273
Query: 168 DQVGAR--------PSRAGGQPPPLTCRRCRAAPRRSARPFR--RPGLPLKSRPG-SGTG 216
AR P+R G P++ R R + SAR R PG L+ R S G
Sbjct: 274 VPGPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAG 333
Query: 217 ARSCGTWGSGGGPGTAAAS 235
RS T PGT S
Sbjct: 334 HRSTST-----TPGTGLRS 347
Score = 35.4 bits (80), Expect = 0.087
Identities = 76/317 (23%), Positives = 105/317 (33%), Gaps = 72/317 (22%)
Query: 26 RRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSG-------------- 71
RR R C++ R + L+ SPESA G G
Sbjct: 225 RRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRGRASVPGPARRGCDS 284
Query: 72 APHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAVPP---RPSQHQSGSRLRPAAPGPR 127
AP P R R +A PR R S PG + G + P R ++ +G R PG
Sbjct: 285 APGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAGHRSTSTTPG-- 342
Query: 128 PGCSSARASPAPAAPQAAARTAPGRAASGGSGPG-SRGQGSDQVGARPSRAGGQPPPLTC 186
G S + Q + R+ SG + S G GS+++ A SR+G P +
Sbjct: 343 TGLRS-------RSTQQRSALLSRRSLSGSADENPSCGTGSERL-AFQSRSGSPDPEVPS 394
Query: 187 R---------RCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
R R RA+ S P R LP+ + + + S + SSP
Sbjct: 395 RASPPVWHAVRMRAS---SPSPPGRFFLPIPQQWDESSSSSYASNSSSPSRSPGLSPSSP 451
Query: 238 SADF----SSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLT 293
S +F S +P P S P LSP PP +
Sbjct: 452 SPEFLGLRSISTPSP-----------------ESLRYALMPEFYALSPVPPEEQ------ 488
Query: 294 LSFGGGVSSPTHPVVAP 310
+ S HP P
Sbjct: 489 ----AEIESTAHPATPP 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,084,159
Number of Sequences: 37866
Number of extensions: 1669746
Number of successful extensions: 22665
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 2349
Number of HSP's that attempted gapping in prelim test: 11855
Number of HSP's gapped (non-prelim): 8854
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.