Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292677 Sequence: fasta or formatted (103aa) NCBI GI: 239754626
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         13           2
 C cysteine            1.9          2           1
 D aspartate           5.8          6           1
 E glutamate           4.9          5           1
 F phenylalanine       0.0          0           0
 G glycine            14.6         15           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.9          5           1
 L leucine             9.7         10           1
 M methionine          1.0          1           1
 N asparagine          1.9          2           1
 P proline            10.7         11           1
 Q glutamine           1.9          2           1
 R arginine           13.6         14           2
 S serine              4.9          5           1
 T threonine           4.9          5           1
 V valine              4.9          5           2
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292579          0.642   PREDICTED: hypothetical protein 
LOC100289941          0.642   PREDICTED: hypothetical protein XP_002346959 
LOC100287351          0.642   PREDICTED: hypothetical protein XP_002342819 
LOC100287351          0.642   PREDICTED: hypothetical protein 
LOC100133091          0.521   PREDICTED: hypothetical protein 
LOC100133091          0.521   PREDICTED: hypothetical protein 
LOC100133091          0.521   PREDICTED: hypothetical protein 
LOC100133910          0.053   PREDICTED: hypothetical protein 
PODN                  0.042   podocan 
LOC643355             0.042   PREDICTED: hypothetical protein 
LOC100292753          0.037   PREDICTED: hypothetical protein 
LOC100290856          0.037   PREDICTED: hypothetical protein XP_002347537 
LOC100289061          0.037   PREDICTED: hypothetical protein XP_002342174 
C1orf229              0.037   hypothetical protein LOC388759 
LOC645321             0.037   PREDICTED: hypothetical protein 
LOC645321             0.037   PREDICTED: hypothetical protein 
LOC100287499          0.032   PREDICTED: hypothetical protein 
LOC100287499          0.032   PREDICTED: hypothetical protein XP_002343643 
TECPR1                0.032   tectonin beta-propeller repeat containing 1 
LOC100287002          0.032   PREDICTED: hypothetical protein XP_002343745 
CCDC157               0.026   coiled-coil domain containing 157 
LOC100293993          0.026   PREDICTED: hypothetical protein 
LOC100289824          0.026   PREDICTED: hypothetical protein XP_002348006 
LOC100287063          0.026   PREDICTED: hypothetical protein 
LOC100287043          0.026   PREDICTED: hypothetical protein XP_002343726 
LOC100287063          0.026   PREDICTED: hypothetical protein XP_002342368 
GTPBP3                0.026   GTP binding protein 3 (mitochondrial) isoform III [...
GTPBP3                0.026   GTP binding protein 3 (mitochondrial) isoform V [Ho...
GTPBP3                0.026   GTP binding protein 3 (mitochondrial) isoform IV [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press