Guide to the Human Genome
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Name: LOC100289941 Sequence: fasta or formatted (122aa) NCBI GI: 239749222
Description:

PREDICTED: hypothetical protein XP_002346959

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         13           1
 C cysteine            3.3          4           1
 D aspartate           4.9          6           1
 E glutamate           5.7          7           1
 F phenylalanine       0.8          1           1
 G glycine            13.1         16           2
 H histidine           0.8          1           1
 I isoleucine          0.0          0           0
 K lysine              1.6          2           1
 L leucine             8.2         10           1
 M methionine          0.8          1           1
 N asparagine          1.6          2           1
 P proline            11.5         14           2
 Q glutamine           0.8          1           1
 R arginine           18.0         22           2
 S serine              5.7          7           1
 T threonine           1.6          2           1
 V valine              6.6          8           2
 W tryptophan          3.3          4           2
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346959 
LOC100292579          1.000   PREDICTED: hypothetical protein 
LOC100287351          1.000   PREDICTED: hypothetical protein XP_002342819 
LOC100287351          1.000   PREDICTED: hypothetical protein 
LOC100292677          0.515   PREDICTED: hypothetical protein 
LOC100133091          0.392   PREDICTED: hypothetical protein 
LOC100133091          0.392   PREDICTED: hypothetical protein 
LOC100133091          0.392   PREDICTED: hypothetical protein 
LOC100287002          0.051   PREDICTED: hypothetical protein XP_002343745 
ARL6IP4               0.046   SRp25 nuclear protein isoform 4 
ARL6IP4               0.046   SRp25 nuclear protein isoform 3 
ARL6IP4               0.046   SRp25 nuclear protein isoform 2 
ARL6IP4               0.046   SRp25 nuclear protein isoform 1 
LOC100291634          0.038   PREDICTED: hypothetical protein XP_002346062 
LOC100287499          0.038   PREDICTED: hypothetical protein 
LOC100287499          0.038   PREDICTED: hypothetical protein XP_002343643 
LOC100287232          0.038   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.038   PREDICTED: hypothetical protein 
OGFR                  0.034   opioid growth factor receptor 
TMEM132E              0.034   transmembrane protein 132E 
CRAMP1L               0.034   Crm, cramped-like 
LOC100293144          0.034   PREDICTED: hypothetical protein 
LOC100288857          0.034   PREDICTED: hypothetical protein 
LOC100288857          0.034   PREDICTED: hypothetical protein XP_002343308 
MAGI2                 0.034   membrane associated guanylate kinase, WW and PDZ dom...
IL2RB                 0.030   interleukin 2 receptor beta precursor 
IGFBP2                0.030   insulin-like growth factor binding protein 2, 36kDa ...
CCDC157               0.030   coiled-coil domain containing 157 
LOC645321             0.030   PREDICTED: hypothetical protein 
LOC645321             0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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