Guide to the Human Genome
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Name: LOC100133091 Sequence: fasta or formatted (60aa) NCBI GI: 239508927
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {60aa} PREDICTED: hypothetical protein
alt mRNA {60aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0          6           1
 C cysteine            3.3          2           1
 D aspartate           6.7          4           1
 E glutamate           6.7          4           1
 F phenylalanine       0.0          0           0
 G glycine            13.3          8           1
 H histidine           3.3          2           1
 I isoleucine          0.0          0           0
 K lysine              3.3          2           1
 L leucine             8.3          5           1
 M methionine          1.7          1           1
 N asparagine          0.0          0           0
 P proline            15.0          9           1
 Q glutamine           3.3          2           1
 R arginine           13.3          8           2
 S serine              3.3          2           1
 T threonine           3.3          2           1
 V valine              3.3          2           1
 W tryptophan          1.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133091          1.000   PREDICTED: hypothetical protein 
LOC100133091          1.000   PREDICTED: hypothetical protein 
LOC100292677          0.917   PREDICTED: hypothetical protein 
LOC100292579          0.861   PREDICTED: hypothetical protein 
LOC100289941          0.861   PREDICTED: hypothetical protein XP_002346959 
LOC100287351          0.861   PREDICTED: hypothetical protein XP_002342819 
LOC100287351          0.861   PREDICTED: hypothetical protein 
LOC100287002          0.065   PREDICTED: hypothetical protein XP_002343745 
PTPRN                 0.046   protein tyrosine phosphatase, receptor type, N precur...
ADAM33                0.046   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.046   ADAM metallopeptidase domain 33 isoform beta preprop...
PODN                  0.037   podocan 
GLI2                  0.028   GLI-Kruppel family member GLI2 
LOC100287297          0.028   PREDICTED: hypothetical protein XP_002342926 
GIF                   0.028   gastric intrinsic factor (vitamin B synthesis) precu...
HGF                   0.019   hepatocyte growth factor isoform 3 precursor 
HGF                   0.019   hepatocyte growth factor isoform 1 preproprotein [Ho...
PLEKHA6               0.019   phosphoinositol 3-phosphate-binding protein-3 
LOC100294448          0.019   PREDICTED: hypothetical protein 
MLL2                  0.019   myeloid/lymphoid or mixed-lineage leukemia 2 
KLF13                 0.019   Kruppel-like factor 13 
LOC100294418          0.019   PREDICTED: hypothetical protein 
TECPR1                0.019   tectonin beta-propeller repeat containing 1 
LOC100291283          0.009   PREDICTED: hypothetical protein XP_002348282 
LOC100289661          0.009   PREDICTED: hypothetical protein 
LOC100289661          0.009   PREDICTED: hypothetical protein XP_002343723 
TESK1                 0.009   testis-specific protein kinase 1 
FOXD4L2               0.009   forkhead box D4-like 2 
FOXD4L5               0.009   forkhead box D4-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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