Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293993 Sequence: fasta or formatted (128aa) NCBI GI: 239757300
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         17           2
 C cysteine            0.0          0           0
 D aspartate           2.3          3           1
 E glutamate           2.3          3           1
 F phenylalanine       2.3          3           1
 G glycine            10.2         13           4
 H histidine           1.6          2           1
 I isoleucine          0.8          1           1
 K lysine              3.1          4           1
 L leucine             8.6         11           2
 M methionine          1.6          2           1
 N asparagine          0.0          0           0
 P proline             5.5          7           1
 Q glutamine           4.7          6           1
 R arginine           14.8         19           3
 S serine             14.1         18           3
 T threonine           5.5          7           2
 V valine              6.2          8           1
 W tryptophan          2.3          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289824          1.000   PREDICTED: hypothetical protein XP_002348006 
LOC100287043          1.000   PREDICTED: hypothetical protein XP_002343726 
SFRS16                0.048   splicing factor, arginine/serine-rich 16 
ARMC5                 0.031   armadillo repeat containing 5 isoform b 
ARMC5                 0.031   armadillo repeat containing 5 isoform a 
LOC100293770          0.026   PREDICTED: hypothetical protein 
LOC100288201          0.026   PREDICTED: hypothetical protein 
LOC100288201          0.026   PREDICTED: hypothetical protein XP_002343260 
LOC100289239          0.022   PREDICTED: hypothetical protein 
LOC100289239          0.022   PREDICTED: hypothetical protein XP_002343068 
LOC100292677          0.022   PREDICTED: hypothetical protein 
STAG1                 0.022   stromal antigen 1 
NUP153                0.022   nucleoporin 153kDa 
LOC731605             0.018   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.018   PREDICTED: similar to BCL2-associated transcription...
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 1 [Hom...
SIX3                  0.018   sine oculis homeobox homolog 3 
LOC100293966          0.018   PREDICTED: hypothetical protein 
ATF2                  0.013   activating transcription factor 2 
GRIN2D                0.013   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100293771          0.013   PREDICTED: hypothetical protein 
LOC100290924          0.013   PREDICTED: hypothetical protein XP_002346979 
LOC100294086          0.013   PREDICTED: hypothetical protein 
KIAA1147              0.013   hypothetical protein LOC57189 
HOXA5                 0.013   homeobox A5 
BEND2                 0.013   BEN domain containing 2 
OTOP3                 0.013   otopetrin 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press