Guide to the Human Genome
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Name: LOC100293842 Sequence: fasta or formatted (193aa) NCBI GI: 239754588
Description:

PREDICTED: similar to SLC29A4 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         14           2
 C cysteine            1.6          3           1
 D aspartate           4.7          9           1
 E glutamate           5.2         10           2
 F phenylalanine       2.6          5           1
 G glycine             5.7         11           2
 H histidine           3.1          6           2
 I isoleucine          3.1          6           1
 K lysine              2.6          5           1
 L leucine            12.4         24           2
 M methionine          1.6          3           1
 N asparagine          2.6          5           2
 P proline             7.8         15           1
 Q glutamine           2.6          5           3
 R arginine            6.2         12           1
 S serine             10.9         21           3
 T threonine           6.7         13           1
 V valine              6.7         13           1
 W tryptophan          3.1          6           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SLC29A4 protein 
LOC402269             0.947   PREDICTED: similar to SLC29A4 protein 
LOC100287294          0.947   PREDICTED: hypothetical protein XP_002342767 
LOC402269             0.947   PREDICTED: similar to SLC29A4 protein 
LOC728500             0.947   PREDICTED: similar to SLC29A4 protein 
LOC100290340          0.587   PREDICTED: hypothetical protein XP_002347643 
SLC29A4               0.360   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.360   solute carrier family 29 (nucleoside transporters),...
SLC29A3               0.040   solute carrier family 29 (nucleoside transporters),...
SLC29A2               0.032   solute carrier family 29 (nucleoside transporters), ...
SLC29A1               0.029   equilibrative nucleoside transporter 1 
SLC29A1               0.029   equilibrative nucleoside transporter 1 
SLC29A1               0.029   equilibrative nucleoside transporter 1 
SLC29A1               0.029   equilibrative nucleoside transporter 1 
SLC29A1               0.029   equilibrative nucleoside transporter 1 
SOBP                  0.016   sine oculis binding protein homolog 
LOC100292122          0.013   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.013   PREDICTED: hypothetical protein XP_002344191 
KDM4D                 0.011   jumonji domain containing 2D 
MUC5AC                0.008   mucin 5AC 
MUC5B                 0.008   mucin 5, subtype B, tracheobronchial 
SSPO                  0.008   SCO-spondin 
C2orf40               0.008   esophageal cancer related gene 4 protein 
KIAA1211              0.008   hypothetical protein LOC57482 
NAT14                 0.008   N-acetyltransferase 14 
LEPR                  0.008   leptin receptor isoform 3 
LEPR                  0.008   leptin receptor isoform 2 
LEPR                  0.008   leptin receptor isoform 1 
BZRAP1                0.008   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.008   peripheral benzodiazepine receptor-associated prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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