Guide to the Human Genome
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Name: LOC402269 Sequence: fasta or formatted (307aa) NCBI GI: 239508863
Description:

PREDICTED: similar to SLC29A4 protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {307aa} PREDICTED: similar to SLC29A4 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         23           2
 C cysteine            1.6          5           1
 D aspartate           4.2         13           1
 E glutamate           5.5         17           2
 F phenylalanine       2.9          9           1
 G glycine             8.5         26           2
 H histidine           2.9          9           2
 I isoleucine          3.3         10           1
 K lysine              2.6          8           1
 L leucine             9.8         30           2
 M methionine          1.6          5           1
 N asparagine          1.6          5           2
 P proline             7.8         24           1
 Q glutamine           5.5         17           3
 R arginine            5.2         16           1
 S serine              9.8         30           3
 T threonine           7.8         24           2
 V valine              7.2         22           1
 W tryptophan          2.3          7           1
 Y tyrosine            2.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SLC29A4 protein 
LOC402269             1.000   PREDICTED: similar to SLC29A4 protein 
LOC100287294          1.000   PREDICTED: hypothetical protein XP_002342767 
LOC728500             1.000   PREDICTED: similar to SLC29A4 protein 
LOC100293842          0.587   PREDICTED: similar to SLC29A4 protein 
SLC29A4               0.397   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.397   solute carrier family 29 (nucleoside transporters),...
LOC100290340          0.344   PREDICTED: hypothetical protein XP_002347643 
SLC29A3               0.025   solute carrier family 29 (nucleoside transporters),...
SLC29A2               0.020   solute carrier family 29 (nucleoside transporters), ...
SLC29A1               0.018   equilibrative nucleoside transporter 1 
SLC29A1               0.018   equilibrative nucleoside transporter 1 
SLC29A1               0.018   equilibrative nucleoside transporter 1 
SLC29A1               0.018   equilibrative nucleoside transporter 1 
SLC29A1               0.018   equilibrative nucleoside transporter 1 
C2orf69               0.010   hypothetical protein LOC205327 
SOBP                  0.010   sine oculis binding protein homolog 
MYST4                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
LOC100292122          0.008   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.008   PREDICTED: hypothetical protein XP_002344191 
AGBL5                 0.008   ATP/GTP binding protein-like 5 isoform 1 
C12orf35              0.008   hypothetical protein LOC55196 
CRNN                  0.008   cornulin 
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
DCX                   0.007   doublecortin isoform c 
DCX                   0.007   doublecortin isoform b 
DCX                   0.007   doublecortin isoform c 
DCX                   0.007   doublecortin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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