Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239754458
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 385 e-108
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 385 e-108
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 385 e-108
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 59 2e-09
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 59 2e-09
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 59 2e-09
gi|19924099 synapsin I isoform Ia [Homo sapiens] 59 2e-09
gi|19924097 synapsin I isoform Ib [Homo sapiens] 59 2e-09
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 57 1e-08
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 57 1e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 56 1e-08
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 55 2e-08
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 55 4e-08
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 54 7e-08
gi|148727370 immediate early response 5-like [Homo sapiens] 53 1e-07
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 52 2e-07
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 52 2e-07
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 52 3e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 3e-07
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 52 3e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 52 3e-07
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 52 4e-07
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 52 4e-07
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens] 52 4e-07
gi|11386183 WAS protein family, member 2 [Homo sapiens] 52 4e-07
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 52 4e-07
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 52 4e-07
gi|150170670 piccolo isoform 2 [Homo sapiens] 51 5e-07
gi|150378539 piccolo isoform 1 [Homo sapiens] 51 5e-07
gi|18959210 WIRE protein [Homo sapiens] 51 5e-07
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 385 bits (990), Expect = e-108
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV
Sbjct: 1 MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
Query: 61 SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS 120
SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS
Sbjct: 61 SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS 120
Query: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP
Sbjct: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 385 bits (990), Expect = e-108
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV
Sbjct: 1 MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
Query: 61 SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS 120
SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS
Sbjct: 61 SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS 120
Query: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP
Sbjct: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 385 bits (990), Expect = e-108
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV
Sbjct: 1 MVPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
Query: 61 SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS 120
SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS
Sbjct: 61 SRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS 120
Query: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP
Sbjct: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 59.3 bits (142), Expect = 2e-09
Identities = 54/171 (31%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 3 PTCGENAASCRSGSHFPPAARGRLPGETLSP-------SPRAAALPPLQQ--RPPGAPGA 53
P + A+ GS A LP LSP +P A ALPPLQ PP +P
Sbjct: 358 PATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPL 417
Query: 54 LGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRR 113
P + P A Q P+ P P +P A P S S + APP +
Sbjct: 418 SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP 477
Query: 114 PPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP-RTARPRPAFTP 163
P +V PSP + S P PQ PPP+ PP + A+P P P
Sbjct: 478 P-----LQVPPSPPASPPMSPSATPPPQ--APPPLAAPPLQLAKPPPQAPP 521
Score = 45.1 bits (105), Expect = 3e-05
Identities = 53/174 (30%), Positives = 63/174 (36%), Gaps = 27/174 (15%)
Query: 19 PPAARGRLPGETLSP-SPRAAALPPLQ--QRPPGAPGALGRPK-------PVS---RGPR 65
PPA+ P T P +P A PPLQ + PP AP AL P P S + P
Sbjct: 485 PPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF 544
Query: 66 AGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS 125
+ P P P AP AP VP S P A+P + RRPPT
Sbjct: 545 SPSASLPMSPLATPPPQAPPVLAAPLLQVPPS---PPASPT-LQAPRRPPTPGPDTSVSG 600
Query: 126 PGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRG 179
P L G PPP P + P + P E+LRG
Sbjct: 601 PRLTLAL--------APGPPPPPSRSPSSTLSGPDLAGHSSSATSTP--EELRG 644
Score = 40.4 bits (93), Expect = 8e-04
Identities = 42/121 (34%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 20 PAARGRLPGETLSPSPRAAALPPLQQRPP-----GAPGALGRPKPVSRGPRAGLREWPQQ 74
PAAR PG L+P P + PP P GA GA+GR R G P+
Sbjct: 17 PAARA--PG-LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS-RVAPSPGRPAGLH 133
R GP R+ ASRP PA R R PP S SPGR +G
Sbjct: 74 APRAGP------TRSAGTSSRNPASRP---PASGRGERAPPAKNTSPGPVSSPGRASGTT 124
Query: 134 R 134
R
Sbjct: 125 R 125
Score = 40.4 bits (93), Expect = 8e-04
Identities = 53/183 (28%), Positives = 64/183 (34%), Gaps = 58/183 (31%)
Query: 20 PAARGRLPGE-----TLSPSPRAAALP-PLQQRPPGAPGALGRP-------------KPV 60
P+AR R P E S S + P P +R P A G L RP P
Sbjct: 194 PSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA 253
Query: 61 SRGPRA-GLREWPQQPWRPGPLGA----------PLQDRAPSAHVPGSASRPTATPAPPR 109
GP A G P P +P P G P +D AP+ + +S P ATP+P
Sbjct: 254 RSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPA--LGPLSSSPLATPSPSA 311
Query: 110 C--SRRPPT---------------TTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
S+ PPT T + PSP P L P P TPP
Sbjct: 312 ALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQT---------LPSPPATPP 362
Query: 153 RTA 155
A
Sbjct: 363 SQA 365
Score = 38.9 bits (89), Expect = 0.002
Identities = 48/179 (26%), Positives = 65/179 (36%), Gaps = 26/179 (14%)
Query: 13 RSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSR-GP--RAGLR 69
R+G R P S R PP + PG + GR +R GP + GLR
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLR 135
Query: 70 EWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
++ G + A SA A R T+ P P P+ ++R + + G
Sbjct: 136 ISAEETVARGKATEAPKRSALSA----GARRDTSGPTP-----GTPSPAMARRSRAAGTE 186
Query: 130 AGLHRSREPRPQDGTPPPVDTPPR---------TARPRPAFTPRPVVGS--ERPRQEQL 177
GL R P P PP + P + T P PA RP G +RP L
Sbjct: 187 VGLPR---PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL 242
Score = 37.7 bits (86), Expect = 0.005
Identities = 42/132 (31%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 32 SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAP-LQDRAP 90
+P+ RA L L RPPG+P RP P P P LGA R P
Sbjct: 16 TPAARAPGL--LTPRPPGSP----RPPP------------PVTPAALRVLGAAGAVGRKP 57
Query: 91 SAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDT 150
A G T + PR T SR P+ PA R P ++ +P PV +
Sbjct: 58 LAERAGGIGGATIPESAPRAGPTRSAGTSSR-NPASRPPASGRGERAPPAKNTSPGPVSS 116
Query: 151 PPR---TARPRP 159
P R T RP P
Sbjct: 117 PGRASGTTRPGP 128
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 59.3 bits (142), Expect = 2e-09
Identities = 54/171 (31%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 3 PTCGENAASCRSGSHFPPAARGRLPGETLSP-------SPRAAALPPLQQ--RPPGAPGA 53
P + A+ GS A LP LSP +P A ALPPLQ PP +P
Sbjct: 319 PATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPL 378
Query: 54 LGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRR 113
P + P A Q P+ P P +P A P S S + APP +
Sbjct: 379 SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP 438
Query: 114 PPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP-RTARPRPAFTP 163
P +V PSP + S P PQ PPP+ PP + A+P P P
Sbjct: 439 P-----LQVPPSPPASPPMSPSATPPPQ--APPPLAAPPLQLAKPPPQAPP 482
Score = 45.1 bits (105), Expect = 3e-05
Identities = 53/174 (30%), Positives = 63/174 (36%), Gaps = 27/174 (15%)
Query: 19 PPAARGRLPGETLSP-SPRAAALPPLQ--QRPPGAPGALGRPK-------PVS---RGPR 65
PPA+ P T P +P A PPLQ + PP AP AL P P S + P
Sbjct: 446 PPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF 505
Query: 66 AGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS 125
+ P P P AP AP VP S P A+P + RRPPT
Sbjct: 506 SPSASLPMSPLATPPPQAPPVLAAPLLQVPPS---PPASPT-LQAPRRPPTPGPDTSVSG 561
Query: 126 PGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRG 179
P L G PPP P + P + P E+LRG
Sbjct: 562 PRLTLAL--------APGPPPPPSRSPSSTLSGPDLAGHSSSATSTP--EELRG 605
Score = 42.4 bits (98), Expect = 2e-04
Identities = 54/194 (27%), Positives = 67/194 (34%), Gaps = 52/194 (26%)
Query: 20 PAARGRLPGE-----TLSPSPRAAALP-PLQQRPPGAPGALGRP-------------KPV 60
P+AR R P E S S + P P +R P A G L RP P
Sbjct: 185 PSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA 244
Query: 61 SRGPRA-GLREWPQQPWRPGPLGA----------PLQDRAPSAHVPGSASRPTATPAPPR 109
GP A G P P +P P G P +D AP+ S+ T +P+ P
Sbjct: 245 RSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPP 304
Query: 110 CSRRPPT---------TTVSRVAPSPGRPA-----------GLHRSREPRPQDGTPPPVD 149
PP+ T S+ S G P L P PQ PP +
Sbjct: 305 SPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQ--APPALA 362
Query: 150 TPPRTARPRPAFTP 163
PP A P P +P
Sbjct: 363 LPPLQAPPSPPASP 376
Score = 40.0 bits (92), Expect = 0.001
Identities = 57/185 (30%), Positives = 69/185 (37%), Gaps = 33/185 (17%)
Query: 20 PAARGRLPGETLSPSPRAAALPPLQQRPP-----GAPGALGRPKPVSRGPRAGLREWPQQ 74
PAAR PG L+P P + PP P GA GA+GR R G P+
Sbjct: 17 PAARA--PG-LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 75 PWRPGPL------GAPLQDRAPSAH--VPGSASRP-----TATPAP--PRCSRRPPTTTV 119
R GP + +RAP A PG S P T P P + R TV
Sbjct: 74 APRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETV 133
Query: 120 SR----VAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTAR------PRPAFTPRPVVGS 169
+R AP + R P GTP P A PRPA + RP +
Sbjct: 134 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPT 193
Query: 170 ERPRQ 174
E PR+
Sbjct: 194 EGPRK 198
Score = 33.5 bits (75), Expect = 0.10
Identities = 49/183 (26%), Positives = 68/183 (37%), Gaps = 14/183 (7%)
Query: 6 GENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPG-ALGRPKPVSRGP 64
GE A ++ S P ++ GR G T P P + A G A PK +
Sbjct: 91 GERAPPAKNTSPGPVSSPGRASGTT-RPGPLGQKGLRISAEETVARGKATEAPKRSALSA 149
Query: 65 RAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSR--- 121
A P P P A + RA V P+A P PP R ++ S
Sbjct: 150 GARRDTSGPTPGTPSPAMAR-RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHST 208
Query: 122 VAPSPG---RPA---GLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQE 175
PSP RP+ GL R R + P+ +P R+ P TPR +P+ +
Sbjct: 209 TEPSPAARRRPSAGGGLQRPAS-RSLSSSATPLSSPARSG-PSARGTPRAPAHPSQPKPK 266
Query: 176 QLR 178
L+
Sbjct: 267 GLQ 269
Score = 28.1 bits (61), Expect = 4.3
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 28/108 (25%)
Query: 88 RAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRV-----------APSPGRPAGLHRSR 136
R P+A PG TP PP R PP T + + P R G+ +
Sbjct: 15 RTPAARAPG-----LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGAT 69
Query: 137 EPR------PQDGTPPPVD------TPPRTARPRPAFTPRPVVGSERP 172
P P + PP P + P P +P G+ RP
Sbjct: 70 IPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRP 117
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 59.3 bits (142), Expect = 2e-09
Identities = 50/167 (29%), Positives = 62/167 (37%), Gaps = 12/167 (7%)
Query: 7 ENAASCRSGSHFPPAARGRLP-----GETLSPSPRAAALPPLQQRPPGAPGALGRPKPVS 61
+ + S R+ + P RG P +P+ AAA PP PP P + P +
Sbjct: 88 KGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAP-A 146
Query: 62 RGPRAGLREWPQQPWRPGPL--GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTV 119
R PRA P PGP G Q AP A P + + P A P R PP
Sbjct: 147 RAPRAAAAAATAPP-SPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVA 205
Query: 120 SRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPV 166
+R P P P P+ Q PP PP R RPV
Sbjct: 206 AREPPLPPPP---QPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPV 249
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 58.9 bits (141), Expect = 2e-09
Identities = 74/232 (31%), Positives = 92/232 (39%), Gaps = 64/232 (27%)
Query: 2 VPTCGENAASCRSGSHFPPAARGRLP-GETLSPSPRAAALPPLQQRPP--GAPGALGRPK 58
+P + AS GSH + G LP G S P A PP QQRPP G P G P
Sbjct: 418 LPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQP---AGPPAQQRPPPQGGPPQPG-PG 473
Query: 59 PVSRGPRAGLREWPQ-QPWRPG---PLGAPLQDRAPS----------------------- 91
P +GP R PQ Q G P G+PL R PS
Sbjct: 474 PQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQS 533
Query: 92 ---AHVPGS--ASRPTATPAPPRCSRRPP----TTTVSRVAP---SPGRPAGLHRSREPR 139
A PG+ A+RP A+P+P R PP T+VS AP S P G R P+
Sbjct: 534 RPVAGGPGAPPAARPPASPSPQR-QAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 140 PQDG----------------TPPPVDTPPRTARPRPAFTPRPVVGSERPRQE 175
G T PP PR + P PA P+P + +++P Q+
Sbjct: 593 KPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQL-AQKPSQD 643
Score = 52.8 bits (125), Expect = 2e-07
Identities = 50/159 (31%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 32 SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAG---LREWPQQPWRPGPLGAP-LQD 87
+PSP A L + P P A RP P P+ G R+ P RP P G L
Sbjct: 436 TPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSG 495
Query: 88 RAPSA--HVPGSASRPTATPAPPRCSRRPPTTTVSR----VAPSPGRPAGLHRSREPRPQ 141
P A +P PT+ P P PPT R VA PG P P PQ
Sbjct: 496 LGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQ 555
Query: 142 DGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
PP T +T+ PA P P +Q +GP
Sbjct: 556 RQAGPPQAT-RQTSVSGPA---PPKASGAPPGGQQRQGP 590
Score = 48.1 bits (113), Expect = 4e-06
Identities = 57/157 (36%), Positives = 65/157 (41%), Gaps = 31/157 (19%)
Query: 19 PPAARG---RLPGETLSPS-PRAAALPPLQ-----QRP----PGAPGALGRPKPVSRGPR 65
PPA RLP T +P P + A PP Q RP PGAP A P S +
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQ 557
Query: 66 AGLREWPQQPWRPGPL-----GAP---LQDRAPSAHVPGSASRPT--ATPAPPRCSRRPP 115
AG + +Q GP GAP Q + P PG A PT A+ A P PP
Sbjct: 558 AGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAG-PTRQASQAGPVPRTGPP 616
Query: 116 TTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
TT R PS PAG P+PQ P D PP
Sbjct: 617 TTQQPR--PSGPGPAG-----RPKPQLAQKPSQDVPP 646
Score = 41.6 bits (96), Expect = 4e-04
Identities = 52/194 (26%), Positives = 63/194 (32%), Gaps = 43/194 (22%)
Query: 3 PTCGENAAS--CRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
PT G+ S G PPAAR SPSP+ A PP R G P
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAAR-----PPASPSPQRQAGPPQATRQTSVSGPA--PPKA 577
Query: 61 SRGPRAGLREW--PQQPWRPGPLG--------------APLQDRAPSAHVPGSASRPTAT 104
S P G + PQ+P PGP G P + P PG A RP
Sbjct: 578 SGAPPGGQQRQGPPQKP--PGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
Query: 105 PAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPR 164
A PP T + P P PQ + P P PR
Sbjct: 636 LAQKPSQDVPPPATAAAGGP-------------PHPQLNKSQSLTNAFNLPEPAP---PR 679
Query: 165 PVVGSERPRQEQLR 178
P + + + E +R
Sbjct: 680 PSLSQDEVKAETIR 693
Score = 30.4 bits (67), Expect = 0.86
Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPG-RPA 130
P+Q R G + PS + + PA P +RPP P PG +
Sbjct: 419 PRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQG-GPPQPGPGPQRQ 477
Query: 131 GLHRSREPRPQ-----DGTPPPVDTPPRTARPRPAFTP-RPVVGSERPRQEQLR 178
G + P PQ G PP +P P P P +P + P Q Q R
Sbjct: 478 GPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGR 531
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 58.9 bits (141), Expect = 2e-09
Identities = 74/232 (31%), Positives = 92/232 (39%), Gaps = 64/232 (27%)
Query: 2 VPTCGENAASCRSGSHFPPAARGRLP-GETLSPSPRAAALPPLQQRPP--GAPGALGRPK 58
+P + AS GSH + G LP G S P A PP QQRPP G P G P
Sbjct: 418 LPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQP---AGPPAQQRPPPQGGPPQPG-PG 473
Query: 59 PVSRGPRAGLREWPQ-QPWRPG---PLGAPLQDRAPS----------------------- 91
P +GP R PQ Q G P G+PL R PS
Sbjct: 474 PQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQS 533
Query: 92 ---AHVPGS--ASRPTATPAPPRCSRRPP----TTTVSRVAP---SPGRPAGLHRSREPR 139
A PG+ A+RP A+P+P R PP T+VS AP S P G R P+
Sbjct: 534 RPVAGGPGAPPAARPPASPSPQR-QAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 140 PQDG----------------TPPPVDTPPRTARPRPAFTPRPVVGSERPRQE 175
G T PP PR + P PA P+P + +++P Q+
Sbjct: 593 KPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQL-AQKPSQD 643
Score = 52.8 bits (125), Expect = 2e-07
Identities = 50/159 (31%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 32 SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAG---LREWPQQPWRPGPLGAP-LQD 87
+PSP A L + P P A RP P P+ G R+ P RP P G L
Sbjct: 436 TPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSG 495
Query: 88 RAPSA--HVPGSASRPTATPAPPRCSRRPPTTTVSR----VAPSPGRPAGLHRSREPRPQ 141
P A +P PT+ P P PPT R VA PG P P PQ
Sbjct: 496 LGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQ 555
Query: 142 DGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
PP T +T+ PA P P +Q +GP
Sbjct: 556 RQAGPPQAT-RQTSVSGPA---PPKASGAPPGGQQRQGP 590
Score = 48.1 bits (113), Expect = 4e-06
Identities = 57/157 (36%), Positives = 65/157 (41%), Gaps = 31/157 (19%)
Query: 19 PPAARG---RLPGETLSPS-PRAAALPPLQ-----QRP----PGAPGALGRPKPVSRGPR 65
PPA RLP T +P P + A PP Q RP PGAP A P S +
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQ 557
Query: 66 AGLREWPQQPWRPGPL-----GAP---LQDRAPSAHVPGSASRPT--ATPAPPRCSRRPP 115
AG + +Q GP GAP Q + P PG A PT A+ A P PP
Sbjct: 558 AGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAG-PTRQASQAGPVPRTGPP 616
Query: 116 TTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
TT R PS PAG P+PQ P D PP
Sbjct: 617 TTQQPR--PSGPGPAG-----RPKPQLAQKPSQDVPP 646
Score = 38.1 bits (87), Expect = 0.004
Identities = 42/140 (30%), Positives = 48/140 (34%), Gaps = 27/140 (19%)
Query: 3 PTCGENAAS--CRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV 60
PT G+ S G PPAAR SPSP+ A PP R G P
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAAR-----PPASPSPQRQAGPPQATRQTSVSGPA--PPKA 577
Query: 61 SRGPRAGLREW--PQQPWRPGPLG--------------APLQDRAPSAHVPGSASRPTAT 104
S P G + PQ+P PGP G P + P PG A RP
Sbjct: 578 SGAPPGGQQRQGPPQKP--PGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
Query: 105 PAPPRCSRRPPTTTVSRVAP 124
A PP T + P
Sbjct: 636 LAQKPSQDVPPPATAAAGGP 655
Score = 30.4 bits (67), Expect = 0.86
Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPG-RPA 130
P+Q R G + PS + + PA P +RPP P PG +
Sbjct: 419 PRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQG-GPPQPGPGPQRQ 477
Query: 131 GLHRSREPRPQ-----DGTPPPVDTPPRTARPRPAFTP-RPVVGSERPRQEQLR 178
G + P PQ G PP +P P P P +P + P Q Q R
Sbjct: 478 GPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGR 531
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 56.6 bits (135), Expect = 1e-08
Identities = 50/156 (32%), Positives = 62/156 (39%), Gaps = 17/156 (10%)
Query: 26 LPGETLSP-------SPRAAALPPLQQ--RPPGAPGALGRPKPVSRGPRAGLREWPQQPW 76
LP LSP +P ALPPLQ PP +P P + P A Q P+
Sbjct: 606 LPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPF 665
Query: 77 RPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSR 136
P P +P A P S S + APP + P +V PSP + S
Sbjct: 666 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPP-----LQVPPSPPASPPMSPSA 720
Query: 137 EPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERP 172
P PQ PPP+ PP P P +P P+ S P
Sbjct: 721 TPPPQ--APPPLAAPPLQVPPSPPASP-PMSPSATP 753
Score = 53.1 bits (126), Expect = 1e-07
Identities = 49/142 (34%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 19 PPAARGRLPGETL-SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWR 77
PPA+ P T S +P + A PPLQ PP P + P S P P
Sbjct: 679 PPASPPVSPSATPPSQAPPSLAAPPLQV-PPSPPAS--PPMSPSATP---------PPQA 726
Query: 78 PGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE 137
P PL AP PS S P+ATP P R PP + P PA L S
Sbjct: 727 PPPLAAPPLQVPPSPPASPPMS-PSATPPP----RVPPLLAAPPLQVPPSPPASLPMSPL 781
Query: 138 PRPQDGTPPPVDTPPRTARPRP 159
+P PP + TPP A P P
Sbjct: 782 AKPPPQAPPALATPPLQALPSP 803
Score = 43.9 bits (102), Expect = 7e-05
Identities = 45/157 (28%), Positives = 53/157 (33%), Gaps = 4/157 (2%)
Query: 27 PGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQ 86
P SP +A PP Q PP A L P P P P PLQ
Sbjct: 708 PSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQ 767
Query: 87 -DRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTP 145
+P A +P S APP + P S A PG+ + P TP
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATP 827
Query: 146 PPVDTPPRTARPRPAFTPRPVVGS--ERPRQEQLRGP 180
PP PP A P P P + PR+ GP
Sbjct: 828 PP-QAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP 863
Score = 43.5 bits (101), Expect = 1e-04
Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 12/146 (8%)
Query: 32 SPSPRAAALPPLQQRPPGAPGALGRPKP-----VSRGPRAGLREWPQQPWRPGPLGAPLQ 86
+P P A PL PP P ++ P P ++ P GL P P P AP
Sbjct: 565 APCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPX 624
Query: 87 DRAPSAHVPGSAS-----RPTATPAPPRCSRRPPTTTVSRVAPSPGRP--AGLHRSREPR 139
P P S P ATP+P + + +P P P A P
Sbjct: 625 LALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP 684
Query: 140 PQDGTPPPVDTPPRTARPRPAFTPRP 165
PP PP A P P P
Sbjct: 685 VSPSATPPSQAPPSLAAPPLQVPPSP 710
Score = 41.2 bits (95), Expect = 5e-04
Identities = 50/165 (30%), Positives = 59/165 (35%), Gaps = 24/165 (14%)
Query: 19 PPAARGRLPGETLSP----SPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
PP+ LP L+ +P A A PPLQ P P + P S P A L P
Sbjct: 769 PPSPPASLPMSPLAKPPPQAPPALATPPLQALP-SPPASFPGQAPFS--PSASL---PMS 822
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHR 134
P P AP AP VP S P A+P + RRPPT P L
Sbjct: 823 PLATPPPQAPPVLAAPLLQVPPS---PPASPT-LQAPRRPPTPGPDTSVSGPRLTLAL-- 876
Query: 135 SREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRG 179
G PPP P + P + P E+LRG
Sbjct: 877 ------APGPPPPPSRSPSSTLSGPDLAGHSSSATSTP--EELRG 913
Score = 40.4 bits (93), Expect = 8e-04
Identities = 42/121 (34%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 20 PAARGRLPGETLSPSPRAAALPPLQQRPP-----GAPGALGRPKPVSRGPRAGLREWPQQ 74
PAAR PG L+P P + PP P GA GA+GR R G P+
Sbjct: 17 PAARA--PG-LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVS-RVAPSPGRPAGLH 133
R GP R+ ASRP PA R R PP S SPGR +G
Sbjct: 74 APRAGP------TRSAGTSSRNPASRP---PASGRGERAPPAKNTSPGPVSSPGRASGTT 124
Query: 134 R 134
R
Sbjct: 125 R 125
Score = 40.4 bits (93), Expect = 8e-04
Identities = 51/192 (26%), Positives = 60/192 (31%), Gaps = 40/192 (20%)
Query: 9 AASCRSGSHFPPAARG--RLPGETLSPSPR-----------------AAALPPLQQRPPG 49
++ RSG P+ARG R P P P+ A AL PL P
Sbjct: 250 SSPARSG----PSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLA 305
Query: 50 APGALG-RPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPP 108
P G + +PV A P P PL PL PS P S + PA P
Sbjct: 306 TPSPSGTKARPVPPPDNAATPLPATLPPSP-PLATPLPLAPPSPSAPPSLQTLPSPPATP 364
Query: 109 RCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVG 168
P TT AP P T PP+ P P P P+
Sbjct: 365 PSQAPPSMTTPPMQAP---------------PSLQTIPPIQVPHSLTSPSLQAPPSPLAL 409
Query: 169 SERPRQEQLRGP 180
S L P
Sbjct: 410 SSLQATTSLGSP 421
Score = 39.3 bits (90), Expect = 0.002
Identities = 43/152 (28%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 20 PAARGRLPGE-----TLSPSPRAAALP-PLQQRPPGAPGALGRPKPVSRGPRAGLREWPQ 73
P+AR R P E S S + P P +R P A G L RP S A
Sbjct: 194 PSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSAT------ 247
Query: 74 QPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSR--VAPSPGRPAG 131
PL +P + + P + + P+ + RPP T R AP+ G P
Sbjct: 248 ------PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALG-PLS 300
Query: 132 LHRSREPRPQDGTPPPVDTPPRTARPRPAFTP 163
P P PV P A P PA P
Sbjct: 301 SSPLATPSPSGTKARPVPPPDNAATPLPATLP 332
Score = 38.9 bits (89), Expect = 0.002
Identities = 48/179 (26%), Positives = 65/179 (36%), Gaps = 26/179 (14%)
Query: 13 RSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSR-GP--RAGLR 69
R+G R P S R PP + PG + GR +R GP + GLR
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLR 135
Query: 70 EWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
++ G + A SA A R T+ P P P+ ++R + + G
Sbjct: 136 ISAEETVARGKATEAPKRSALSA----GARRDTSGPTP-----GTPSPAMARRSRAAGTE 186
Query: 130 AGLHRSREPRPQDGTPPPVDTPPR---------TARPRPAFTPRPVVGS--ERPRQEQL 177
GL R P P PP + P + T P PA RP G +RP L
Sbjct: 187 VGLPR---PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL 242
Score = 37.7 bits (86), Expect = 0.005
Identities = 42/132 (31%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 32 SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAP-LQDRAP 90
+P+ RA L L RPPG+P RP P P P LGA R P
Sbjct: 16 TPAARAPGL--LTPRPPGSP----RPPP------------PVTPAALRVLGAAGAVGRKP 57
Query: 91 SAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDT 150
A G T + PR T SR P+ PA R P ++ +P PV +
Sbjct: 58 LAERAGGIGGATIPESAPRAGPTRSAGTSSR-NPASRPPASGRGERAPPAKNTSPGPVSS 116
Query: 151 PPR---TARPRP 159
P R T RP P
Sbjct: 117 PGRASGTTRPGP 128
Score = 33.5 bits (75), Expect = 0.10
Identities = 41/146 (28%), Positives = 47/146 (32%), Gaps = 20/146 (13%)
Query: 39 ALPPLQQRPPGAPGALGRPKPV----------SRGPRAGLREWPQQPWRPGPLGAP--LQ 86
A PPLQ A L P + S P+A L P AP LQ
Sbjct: 465 ASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQ 524
Query: 87 DRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREP--RPQDGT 144
S P + P+ P P + + P TT P P P L P P T
Sbjct: 525 TPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPA-PCPLQAPPSPLTTPPPET 583
Query: 145 P-----PPVDTPPRTARPRPAFTPRP 165
P PP PP A P P P
Sbjct: 584 PSSIATPPPQAPPALASPPLQGLPSP 609
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 56.6 bits (135), Expect = 1e-08
Identities = 59/209 (28%), Positives = 67/209 (32%), Gaps = 35/209 (16%)
Query: 3 PTCGENAASCRSGSHFPPAAR---GRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKP 59
P N GS PP G P P +PP PP PGA G P
Sbjct: 217 PPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPP 276
Query: 60 VSRGPRAGLREWPQQ---PWRPGPLGAPLQDRAPSAH------------VPGSASRPTAT 104
+ P AG P+ PG + P + AH PGS +P
Sbjct: 277 SAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPR 336
Query: 105 PAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPP---------PVDTPP--- 152
P P PP + P G P G P G PP P PP
Sbjct: 337 PPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGY 396
Query: 153 -RTARPRPAFTPRPVVGSERPRQEQLRGP 180
R P P TPRP V P + LRGP
Sbjct: 397 QRGPLPPPRPTPRPPV----PPRGPLRGP 421
Score = 29.6 bits (65), Expect = 1.5
Identities = 32/131 (24%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 54 LGRPKPVSRG--PRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAP---- 107
L P+S+ P + P P P P+ + L P +P S P P P
Sbjct: 195 LAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALP 254
Query: 108 ---PRCSRRPPTT-------TVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARP 157
P PP S P G P H P P G P P + + A
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHH 314
Query: 158 RPAFTPRPVVG 168
P P G
Sbjct: 315 GPHGLGHPHAG 325
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 56.2 bits (134), Expect = 1e-08
Identities = 56/160 (35%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 9 AASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPV-SRGPRAG 67
A S S S A G SPSP+ A PP PP G P P + P A
Sbjct: 910 ALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAAT-PPSPKGGPATPSPKWAPTPPAA 968
Query: 68 LREWPQQ-PWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSP 126
P+ P P P GAP P A P S ATP+ P+ + PP T PSP
Sbjct: 969 TPPSPKGGPATPSPKGAP----TPPAATPPSPKGGPATPS-PKGAPTPPAVT----PPSP 1019
Query: 127 -GRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRP 165
G PA P P+ + PP TPP + + PA TP P
Sbjct: 1020 KGSPAA-----TPFPKGASTPPAATPP-SPKGSPAATPLP 1053
Score = 56.2 bits (134), Expect = 1e-08
Identities = 58/192 (30%), Positives = 67/192 (34%), Gaps = 44/192 (22%)
Query: 6 GENAASCRSGSHFPPAARGRLP-GETLSPSPRAAALPPLQQRP-----PGAPGALGRPKP 59
G A+ G+ PPAA P G +PSP+ A PP P P P G P P
Sbjct: 929 GIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTP 988
Query: 60 VSR---GPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT 116
+ P+ G P P P GAP P+ P P ATP P S P
Sbjct: 989 PAATPPSPKGG-------PATPSPKGAPTP---PAVTPPSPKGSPAATPFPKGASTPPAA 1038
Query: 117 T-------------------TVSRVAPSP-GRPAGLHRSREPRPQDGTPPPVDTPPRTAR 156
T T + PSP G PA P P TPP P T
Sbjct: 1039 TPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPS 1098
Query: 157 PR-----PAFTP 163
P+ PA TP
Sbjct: 1099 PKGAPMPPAATP 1110
Score = 56.2 bits (134), Expect = 1e-08
Identities = 55/167 (32%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 6 GENAASCRSGSHFPPAARGRLP-GETLSPSPRAAALPP--LQQRPPGAPGALGRPKPVSR 62
G A G+ PPAA P G +PSP+ A PP P G+P A PK S
Sbjct: 975 GGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAST 1034
Query: 63 GPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRV 122
P A P P + P PL AP+ +A+ P+ P S + T +
Sbjct: 1035 PPAA----TPPSP-KGSPAATPLPKGAPTT---PAATLPSPKGGPATPSLKGAPTPPAAT 1086
Query: 123 APSP-GRPAGLHRSREPRPQDGTPPP----VDTPPRTARP-RPAFTP 163
PSP G PA P P TPP + TPP P PA TP
Sbjct: 1087 PPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATP 1133
Score = 53.9 bits (128), Expect = 7e-08
Identities = 48/167 (28%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 6 GENAASCRSGSHFPPAARGRLP-GETLSPSPRAAALPPLQQRP--------PGAPGALGR 56
G A G+ PPAA P G +PSP+ A +PP P P GA
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT 1128
Query: 57 PKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT 116
P P+ GL P P GAP A G + P AP + PP+
Sbjct: 1129 PAATPPSPKGGLA-------TPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1181
Query: 117 TTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTP 163
PSP + P P+ G P P+ A PA TP
Sbjct: 1182 PKGGLATPSPKGAPTTPAATPPSPKGGLATP---SPKGAPTTPAATP 1225
Score = 52.4 bits (124), Expect = 2e-07
Identities = 50/166 (30%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 6 GENAASCRSGSHFPPAARGRLP--GETLSPSPRAAALPPLQQ--RPPGAPGALGRPKPVS 61
G A G+ PPA P +P P+ A+ PP P G+P A PK
Sbjct: 998 GGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP 1057
Query: 62 RGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSR 121
P A L P P GAP P A P S ATP+P P T S
Sbjct: 1058 TTPAATLPSPKGGPATPSLKGAP----TPPAATPPSPKGGPATPSPKGAPMPPAATPPS- 1112
Query: 122 VAPSPGRPAGLHRSREPRPQDGTPPP----VDTPPRTARPRPAFTP 163
P G H+ P P P PP+ A PA TP
Sbjct: 1113 --PKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1156
Score = 52.0 bits (123), Expect = 3e-07
Identities = 44/154 (28%), Positives = 57/154 (37%), Gaps = 14/154 (9%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPW-- 76
PP+ +G L +P P+ A P PP G L P P +G P P
Sbjct: 1133 PPSPKGGLA----TPPPKGAPTTPAAT-PPSPKGGLATPPP--KGAPTTPAATPPSPKGG 1185
Query: 77 --RPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHR 134
P P GAP A G + P+ AP + PP+ PSP
Sbjct: 1186 LATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA 1245
Query: 135 SREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVG 168
+ P P+ G P PP+ A PA TP + G
Sbjct: 1246 ATPPSPKGG---PATPPPKGAPTPPAATPPSLKG 1276
Score = 52.0 bits (123), Expect = 3e-07
Identities = 53/158 (33%), Positives = 61/158 (38%), Gaps = 18/158 (11%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKP--VSRGPRAGLREWPQQPW 76
PP+ +G L +PSP+ A P PP G L P P P A P
Sbjct: 1202 PPSPKGGLA----TPSPKGAPTTPAAT-PPSPKGGLATPSPKGAPTTPAATPPSPKGGPA 1256
Query: 77 RPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSP-GRPAGLHRS 135
P P GAP P A P S ATP P + + P T PSP G PA
Sbjct: 1257 TPPPKGAP----TPPAATPPSLKGGLATP-PHKGAPNPAVVT----PPSPKGGPATSPPK 1307
Query: 136 REPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPR 173
P P TPP P T P+ A TP P V P+
Sbjct: 1308 GAPTPPAATPPSPKGSPGTPPPKGAPTP-PAVTPPSPK 1344
Score = 51.2 bits (121), Expect = 5e-07
Identities = 44/159 (27%), Positives = 56/159 (35%), Gaps = 20/159 (12%)
Query: 15 GSHFPPAARGRLP--GETLSPSPRAAALPPLQQRP-----PGAPGALGRPKPVSR---GP 64
G+ PPAA P +P P+ A P P P P G P P + P
Sbjct: 1031 GASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSP 1090
Query: 65 RAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAP 124
+ G P P P GAP+ A G + P AP + PP+ P
Sbjct: 1091 KGG-------PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATP 1143
Query: 125 SPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTP 163
P + P P+ G P PP+ A PA TP
Sbjct: 1144 PPKGAPTTPAATPPSPKGGLATP---PPKGAPTTPAATP 1179
Score = 50.4 bits (119), Expect = 8e-07
Identities = 42/142 (29%), Positives = 54/142 (38%), Gaps = 21/142 (14%)
Query: 32 SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPS 91
S SP+ A P + P +P G P P + P P P G P
Sbjct: 915 SSSPKKARATPAPKGIPASPSPKGAPTPPAATP-------------PSPKGGPATPSPKW 961
Query: 92 AHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSP-GRPAGLHRSREPRPQDGTPPPVDT 150
A P +A+ P+ P S + T + PSP G PA P P+ PP T
Sbjct: 962 APTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPA------TPSPKGAPTPPAVT 1015
Query: 151 PPRTARPRPAFTPRPVVGSERP 172
PP + + PA TP P S P
Sbjct: 1016 PP-SPKGSPAATPFPKGASTPP 1036
Score = 48.5 bits (114), Expect = 3e-06
Identities = 52/197 (26%), Positives = 72/197 (36%), Gaps = 51/197 (25%)
Query: 14 SGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSR--GPRA----- 66
SG+ +++G L SPSP ++ P +RPP G+ G P+ P +
Sbjct: 775 SGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEAS 834
Query: 67 ----------GLREWP---QQPWRPGPLGAPLQDRAPSAHVPGSASRPT----------- 102
G ++ P P P P GAP PSA P S T
Sbjct: 835 FLPENSLSFQGSKDSPATTHSPTPPSPKGAP----TPSAVTPLSPKGVTLPPKETPTPSV 890
Query: 103 ----------ATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
ATPAP + T++ + A + P G+ S P P+ PP TPP
Sbjct: 891 VNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPAS--PSPKGAPTPPAATPP 948
Query: 153 R----TARPRPAFTPRP 165
A P P + P P
Sbjct: 949 SPKGGPATPSPKWAPTP 965
Score = 45.8 bits (107), Expect = 2e-05
Identities = 50/174 (28%), Positives = 63/174 (36%), Gaps = 20/174 (11%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRP 78
PP+ +G L +P A + P P G P A PK P A P P
Sbjct: 1271 PPSLKGGLATPPHKGAPNPAVVTP--PSPKGGP-ATSPPKGAPTPPAATPPSPKGSPGTP 1327
Query: 79 GPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRS--- 135
P GAP P A P S PA S+ PTT S+ P+P H+
Sbjct: 1328 PPKGAP----TPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPA 1383
Query: 136 -REPRPQDG--TPPPVDTP------PRTARPRPAFTPRPVVGSERPRQEQLRGP 180
P P+ G P P P P + + PA TP G+ P + L P
Sbjct: 1384 MTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPA-TPVTREGAATPSKGDLTPP 1436
Score = 45.4 bits (106), Expect = 3e-05
Identities = 51/197 (25%), Positives = 68/197 (34%), Gaps = 31/197 (15%)
Query: 6 GENAASCRSGSHFPPAARGRLP-GETLSPSPRAAALPPLQQRP----------------- 47
G A S G+ PPAA P G +P P+ A PP P
Sbjct: 1299 GGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKG 1358
Query: 48 -PGAPGALGRPKPVSRGP--RAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTAT 104
P P + P P + P + G P P R + +P D A +P S + AT
Sbjct: 1359 GPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPAT 1418
Query: 105 P-------APPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARP 157
P P + PP T + +P A P + P TPP P
Sbjct: 1419 PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478
Query: 158 RPAFTPRPVVGSERPRQ 174
PA P+ V S P++
Sbjct: 1479 -PA--PKQVATSSSPKK 1492
Score = 41.2 bits (95), Expect = 5e-04
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 6/128 (4%)
Query: 42 PLQQRPPGAPGALGRPKPVSRGPRA--GLREWPQQPWRPGPLGAPLQDRAPSAHVPGSAS 99
P P P G P P + P + G+ P++ P + P P+ P A
Sbjct: 850 PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAP 909
Query: 100 RPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDG--TPPP--VDTPPRTA 155
+ T + P+ +R P +PSP + P P+ G TP P TPP
Sbjct: 910 ALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAAT 969
Query: 156 RPRPAFTP 163
P P P
Sbjct: 970 PPSPKGGP 977
Score = 40.0 bits (92), Expect = 0.001
Identities = 52/195 (26%), Positives = 72/195 (36%), Gaps = 24/195 (12%)
Query: 3 PTCGENAASCRSGSHFPPAARG-RLPGETLSPSPRAAALPPLQQRPPGAPGALG-RPKPV 60
P E AA+ G PPA L + +P+ P + P P PK
Sbjct: 1419 PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478
Query: 61 SRGPRAGLREWPQQ-PWRPGPLGAP-LQDRAPSA--HVPGSASR------PTAT------ 104
+ P++ P P P+GAP L PS+ VP + S PTAT
Sbjct: 1479 PAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKT 1538
Query: 105 PAP--PRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPR---TARPRP 159
PA P+ + PP TV +P P P ++ + PP TP P+
Sbjct: 1539 PATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKE 1598
Query: 160 AFTPRPVVGSERPRQ 174
P P V S P++
Sbjct: 1599 LLIP-PAVTSPSPKE 1612
Score = 40.0 bits (92), Expect = 0.001
Identities = 45/159 (28%), Positives = 60/159 (37%), Gaps = 21/159 (13%)
Query: 20 PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGA--LGRPKPVSRGPRAGLREWPQQPWR 77
P LP + SP+ P +R P AP A L + P + P+ L
Sbjct: 1499 PMGAPTLPA-VIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALI-------- 1549
Query: 78 PGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTT-TVSRVAPSPGR----PAGL 132
P + P + P+ P A ATP+ S P T + + APSP PA
Sbjct: 1550 PPAMTVPSPKKTPAIPTPKEAP---ATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVT 1606
Query: 133 HRSRE--PRPQDGTPPPVDTPPRTARPRPAFTPRPVVGS 169
S + P P TPP + P T P+ T PV S
Sbjct: 1607 SPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPS 1645
Score = 38.9 bits (89), Expect = 0.002
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 23/176 (13%)
Query: 9 AASCRSGSHFPPAARG--RLPGETLS-----PSPRAAALPPLQQRPPGAPGALGRPKPVS 61
A S G P+++G LP T P+P+ A ++ P P +G P +
Sbjct: 1448 ATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPA 1507
Query: 62 RGPRAGLREWPQQPWRP----GPLGAPLQDRAPSAHVPGSASRPTA--------TPAPPR 109
P + +E P P P L + P+ P A P A TPA P
Sbjct: 1508 VIPSSP-KEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPT 1566
Query: 110 CSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQD-GTPPPVDTP-PRTARPRPAFTP 163
+ P T S+ A SP P P++ PP V +P P+ A PA TP
Sbjct: 1567 -PKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTP 1621
Score = 37.0 bits (84), Expect = 0.009
Identities = 42/152 (27%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 19 PPAARGRLPGETLS-PSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWR 77
PPA P +T + P+P+ A P + P P P P
Sbjct: 1550 PPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVT--PSTYKGAPSPKELLIPPAVTS 1607
Query: 78 PGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGL---HR 134
P P AP P A P S + ATPAP PP T S + SP PA +
Sbjct: 1608 PSPKEAP----TPPAVTPPSPEKGPATPAPKGTPTSPPVTP-SSLKDSPTSPASVTCKMG 1662
Query: 135 SREPRPQDGTPP---PVDTPPRTARPRPAFTP 163
+ P+ G P P P P TP
Sbjct: 1663 ATVPQASKGLPAKKGPTALKEVLVAPAPESTP 1694
Score = 33.9 bits (76), Expect = 0.077
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 20/169 (11%)
Query: 9 AASCRSGSHFPPAARGRLPGET---------LSPSPRAAAL--PPLQQRPPGAPGALGRP 57
+ +C+ G+ P A++G LP + ++P+P + + P ++ P + P
Sbjct: 1656 SVTCKMGATVPQASKG-LPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSP 1714
Query: 58 KPVSRGPRA-GLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT 116
P+ P A + P P PL +D + +A ++ P APP P
Sbjct: 1715 -PICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKASTPL 1773
Query: 117 TTVS--RVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTP 163
T + +V P P + P P PV T P P+ F P
Sbjct: 1774 TAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVPTLP----PKQQFLP 1818
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 31 LSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAP 90
L+PSP LPP QQ P +PG + P P P P G P Q
Sbjct: 1802 LAPSP-VPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELLPLIPPEPISGGVPFQSVLV 1860
Query: 91 SAHVPGSASRPTATPA 106
+ P SA P TP+
Sbjct: 1861 NMPTPKSAGIPVPTPS 1876
Score = 29.3 bits (64), Expect = 1.9
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 95 PGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE---PRPQDGTPPPVDTP 151
PG P +PAP +C P + ++ +P P E P+ GT P+ T
Sbjct: 41 PGPTLPPPCSPAPQQC----PLSAANQASPFPSPSTIASTPLEVPFPQSSSGTALPLGTA 96
Query: 152 PRTARPRPAFTPRPVVGSERPRQEQLRGP 180
P P F P + P L P
Sbjct: 97 PEA----PTFLPNLIGPPISPAALALASP 121
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 55.5 bits (132), Expect = 2e-08
Identities = 68/207 (32%), Positives = 74/207 (35%), Gaps = 42/207 (20%)
Query: 6 GENAASCRSGSH---FPPAARGR------LPGETLSPSPRAAALPP-------LQQRPP- 48
GE A GS FP RGR +PG P P PP RPP
Sbjct: 182 GEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPL 241
Query: 49 GAPGALGRPKPVSRG----------PRAGLRE-----WPQQPWRPGPLGAPLQDRAPSAH 93
G PG G P P G P G R +P QP+ PLG PL P
Sbjct: 242 GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLG-PLPP-GPPPP 299
Query: 94 VPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPR 153
VPG P P PP+ PP P P P G + P P PPP PP
Sbjct: 300 VPGYG--PPPGPPPPQQGPPPPP---GPFPPRPPGPLGPPLTLAPPPHLPGPPP-GAPPP 353
Query: 154 TARPRPAFTPRPVVGSERPRQEQLRGP 180
PAF P P S P + RGP
Sbjct: 354 APHVNPAFFP-PPTNSGMPTSDS-RGP 378
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/149 (30%), Positives = 52/149 (34%), Gaps = 38/149 (25%)
Query: 27 PGETLSPS----PRAAALPPLQQRPPGAP--------------------GALGRPKPVSR 62
PG+ L P P PP PG P G P P +
Sbjct: 255 PGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQ 314
Query: 63 GPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRR--PPTTTVS 120
GP +P +P PGPLG PL AP H+PG P A P P + PP T
Sbjct: 315 GPPPPPGPFPPRP--PGPLGPPL-TLAPPPHLPGPP--PGAPPPAPHVNPAFFPPPT--- 366
Query: 121 RVAPSPGRPAGLHRSREPRPQDGTPPPVD 149
+ G P R P G PPP D
Sbjct: 367 ----NSGMPTSDSRGPPPTDPYGRPPPYD 391
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 54.7 bits (130), Expect = 4e-08
Identities = 49/166 (29%), Positives = 61/166 (36%), Gaps = 32/166 (19%)
Query: 20 PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPR-AGLREWPQQ---- 74
P R P + P P A +PP+ PPG+ R PV GPR A + WP
Sbjct: 250 PPMPPRPPMVPMPPRPPIAPMPPMAPVPPGS-----RMAPVPPGPRMAPVPPWPPMAPVP 304
Query: 75 PWRP------GPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGR 128
PW P GP AP+ P A VP P PP + PP ++ + P P
Sbjct: 305 PWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPM-APLPPGPPMAPLPPGP-- 361
Query: 129 PAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTP-----RPVVGS 169
P PP PPR+ P P PV+ S
Sbjct: 362 --------PMAPLPPGPPMAPLPPRSHVPHTGLAPVHITWAPVINS 399
Score = 33.5 bits (75), Expect = 0.10
Identities = 32/110 (29%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAG 131
P+ P P P P P P A P P PP SR P R+AP P P
Sbjct: 242 PRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPG-SRMAPVPPGPRMAPVPPWP-- 298
Query: 132 LHRSREPRPQDGTPP-PVDTPPRTARPRPAFTPRPVVGSERPRQEQLRGP 180
P PP P P T P P P + P R P
Sbjct: 299 --------PMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVP 340
Score = 32.3 bits (72), Expect = 0.23
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 83 APLQDRAPSAHVPGSASRPTATPAPPRCSR-----RPPTTTVSRVAPSPGRPAGLHRSRE 137
AP D A H+ RP P PP R PP ++ + P P G +
Sbjct: 226 APALDPALCVHLVPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPV 285
Query: 138 PRPQDGTPPPVDTPPRTARPRPAFTPRP 165
P P P P P P P P
Sbjct: 286 PPGPRMAPVPPWPPMAPVPPWPPMAPVP 313
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 53.9 bits (128), Expect = 7e-08
Identities = 56/179 (31%), Positives = 67/179 (37%), Gaps = 40/179 (22%)
Query: 8 NAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRP---KPVSRGP 64
++A+ + S FPP PG PS RAA L+ P AP L R P G
Sbjct: 41 SSAAAAASSSFPP------PGFIHPPSSRAAVHSRLRAAPAAAPRLLPRVLAGAPARTGA 94
Query: 65 RAGLR-------------------EWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATP 105
AG R W + RPGP PLQ R+ H + P ATP
Sbjct: 95 LAGSRLRAAAAAAHDQEAAAPTGRRWRR---RPGP-SPPLQPRSRHPHTRYPRAVPEATP 150
Query: 106 APPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPR 164
RPP T R PG + +R P + PP D PR PRP PR
Sbjct: 151 L------RPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRA--PRPGDHPR 201
Score = 35.4 bits (80), Expect = 0.027
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRP 78
PP R R P R++ P + P A G P+P R PR G R
Sbjct: 154 PPGTRPRAKSR---PGCRSSPFPARSRTPGEAGPPRGDPRP--RAPRPGDHPRRSPALRE 208
Query: 79 GP-LGAPLQDRAPSAHVPGSASRPTATPAPPRCSRR 113
P L P R G + P P PP C+ R
Sbjct: 209 TPSLSPPSPGRRNGKRAAGKGTTPQPQPPPPPCATR 244
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 53.1 bits (126), Expect = 1e-07
Identities = 41/116 (35%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 33 PSPRAAALPPLQQRPPGAPGALGR-PKPVSRGPRAGL--REWPQQPWRPGP--LGAPLQD 87
P+PR A P G GAL P + P G R P +P +PGP L PL
Sbjct: 132 PAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPLPLPP 191
Query: 88 RAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVA-PSPGRPAGLHRSREPRPQD 142
AP+A P P A APP + PP S A P+P G +R P P D
Sbjct: 192 PAPAALCPRDPRAPAACSAPPGAA--PPAAAASPPASPAPASSPGFYRGAYPTPSD 245
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 52.4 bits (124), Expect = 2e-07
Identities = 38/125 (30%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASR 100
PP+ PP P G+P P GP L W QQ +P P P A S +P +
Sbjct: 473 PPMGMMPPPPPPPSGQPPPPPSGP---LPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNT 529
Query: 101 PTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPA 160
T T + S P + A SPG P G P V PP P P
Sbjct: 530 TTTTTSAGTGSIPPWQQQQAAAAASPGAP----------QMQGNPTMVPLPPGVQPPLPP 579
Query: 161 FTPRP 165
P P
Sbjct: 580 GAPPP 584
Score = 34.3 bits (77), Expect = 0.059
Identities = 44/185 (23%), Positives = 56/185 (30%), Gaps = 28/185 (15%)
Query: 14 SGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSR-------GPRA 66
SG P A P + P + + Q RPP +P GP
Sbjct: 333 SGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGG 392
Query: 67 GLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSP 126
G +P P P P H P P P PP ++ P P P
Sbjct: 393 GPHSFPH----PLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPP--GHHGPPP 446
Query: 127 ------GRPAG-----LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQE 175
P G LH+ + P PPP+ P P P P G P Q+
Sbjct: 447 MDQYLGSTPVGSGVYRLHQGKGMMP----PPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQ 502
Query: 176 QLRGP 180
Q + P
Sbjct: 503 QQQQP 507
Score = 34.3 bits (77), Expect = 0.059
Identities = 37/167 (22%), Positives = 52/167 (31%), Gaps = 7/167 (4%)
Query: 17 HFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPW 76
H P+ G G + +P PP +PP P G P GP + P
Sbjct: 399 HPLPSLTGGHGGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPV 456
Query: 77 RPGPL----GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGL 132
G G + P +P P+ P PP PP + P P P+
Sbjct: 457 GSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSS 516
Query: 133 HRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRG 179
S P P T T P + + + P Q++G
Sbjct: 517 MASSTPLPWQQNTTTTTTSAGTG-SIPPWQQQQAAAAASPGAPQMQG 562
Score = 29.6 bits (65), Expect = 1.5
Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 44/139 (31%)
Query: 30 TLSPSPRAAALPPLQQR------PPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA 83
T + S ++PP QQ+ PGAP G P V P QP P P GA
Sbjct: 531 TTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGV-------QP--PLPPGA 581
Query: 84 PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDG 143
P P PP PP + + P G H S +D
Sbjct: 582 P-------------------PPPPP-----PPPGSAGMMIPPRGGDGPSHES-----EDF 612
Query: 144 TPPPVDTPPRTARPRPAFT 162
P V P R + RP +T
Sbjct: 613 PRPLVTLPGRQPQQRPWWT 631
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 52.4 bits (124), Expect = 2e-07
Identities = 38/125 (30%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASR 100
PP+ PP P G+P P GP L W QQ +P P P A S +P +
Sbjct: 473 PPMGMMPPPPPPPSGQPPPPPSGP---LPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNT 529
Query: 101 PTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPA 160
T T + S P + A SPG P G P V PP P P
Sbjct: 530 TTTTTSAGTGSIPPWQQQQAAAAASPGAP----------QMQGNPTMVPLPPGVQPPLPP 579
Query: 161 FTPRP 165
P P
Sbjct: 580 GAPPP 584
Score = 36.2 bits (82), Expect = 0.016
Identities = 42/130 (32%), Positives = 47/130 (36%), Gaps = 31/130 (23%)
Query: 30 TLSPSPRAAALPPLQQR------PPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA 83
T + S ++PP QQ+ PGAP G P V P QP P P GA
Sbjct: 531 TTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGV-------QP--PLPPGA 581
Query: 84 PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGR-PAGLHRSREPRPQD 142
P P PGSA A P PP PP S G AG+ P
Sbjct: 582 P---PPPPPPPPGSAGMMYAPPPPP-----PPPMDPSNFVTMMGMGVAGM-------PPF 626
Query: 143 GTPPPVDTPP 152
G PP PP
Sbjct: 627 GMPPAPPPPP 636
Score = 34.3 bits (77), Expect = 0.059
Identities = 44/185 (23%), Positives = 56/185 (30%), Gaps = 28/185 (15%)
Query: 14 SGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSR-------GPRA 66
SG P A P + P + + Q RPP +P GP
Sbjct: 333 SGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGG 392
Query: 67 GLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSP 126
G +P P P P H P P P PP ++ P P P
Sbjct: 393 GPHSFPH----PLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPP--GHHGPPP 446
Query: 127 ------GRPAG-----LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQE 175
P G LH+ + P PPP+ P P P P G P Q+
Sbjct: 447 MDQYLGSTPVGSGVYRLHQGKGMMP----PPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQ 502
Query: 176 QLRGP 180
Q + P
Sbjct: 503 QQQQP 507
Score = 34.3 bits (77), Expect = 0.059
Identities = 37/167 (22%), Positives = 52/167 (31%), Gaps = 7/167 (4%)
Query: 17 HFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPW 76
H P+ G G + +P PP +PP P G P GP + P
Sbjct: 399 HPLPSLTGGHGGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPV 456
Query: 77 RPGPL----GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGL 132
G G + P +P P+ P PP PP + P P P+
Sbjct: 457 GSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSS 516
Query: 133 HRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQLRG 179
S P P T T P + + + P Q++G
Sbjct: 517 MASSTPLPWQQNTTTTTTSAGTG-SIPPWQQQQAAAAASPGAPQMQG 562
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 52.0 bits (123), Expect = 3e-07
Identities = 60/189 (31%), Positives = 70/189 (37%), Gaps = 35/189 (18%)
Query: 3 PTCGENAASCRSGSHFPPAARGRLPGET------LSPSPRAAALPPLQQRPPGAPGALGR 56
P+ G A + HF A G L L P R+ PPGA G LG
Sbjct: 895 PSAGVAATTIAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAAQPSPAPPGARGGLGL 954
Query: 57 PK------PVSRGPRAGLREWPQQPWR------PGPLGA----PLQDRAPS--AHVPGSA 98
P+ P SR P + + Q P GPL P Q PS A G A
Sbjct: 955 PEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGA 1014
Query: 99 SRPTATP----APPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRT 154
S TP +PP S PP T S +P R +G H S P +PPP P R
Sbjct: 1015 SPVGFTPRGGLSPPGHSPGPPRTFPS----APPRASGSHGSL-LLPPASSPPPPQVPQR- 1068
Query: 155 ARPRPAFTP 163
R P TP
Sbjct: 1069 -RGTPPLTP 1076
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.0 bits (123), Expect = 3e-07
Identities = 47/153 (30%), Positives = 60/153 (39%), Gaps = 10/153 (6%)
Query: 27 PGETLSPSPRAAALP---PLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA 83
PG+ P P+ P P +P G P G SR P G + P P G
Sbjct: 260 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP-PGKPQGPPPQGGNQPQGP 318
Query: 84 PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT-TTVSRVAPS-PGRPAGLHRSREPRPQ 141
P P P ++P P P + PP + SR A S PG+P G + PQ
Sbjct: 319 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQ 378
Query: 142 DGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQ 174
G PPP P+ + PA P+ G RP Q
Sbjct: 379 -GPPPPAGGNPQQPQAPPAGQPQ---GPPRPPQ 407
Score = 46.6 bits (109), Expect = 1e-05
Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 33/170 (19%)
Query: 27 PGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPL 85
PG+ P P+ P Q PP PG KP P+ G + PQ P PG P G P
Sbjct: 54 PGKPQGPPPQGGNQP---QGPPPPPG-----KPQGPPPQGGNK--PQGPPPPGKPQGPPP 103
Query: 86 Q-DRA---------PSAHVPGSASRPTATPAPPRCSRRPPTTTVSRV--APSPGRPAG-- 131
Q D++ P P ++P P PP + PP ++ P PG+P G
Sbjct: 104 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 163
Query: 132 ------LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPR--PVVGSERPR 173
SR P + PPP P P P+ P G +P+
Sbjct: 164 PQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 213
Score = 45.4 bits (106), Expect = 3e-05
Identities = 44/159 (27%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPK------PVSRGPRA--GLRE 70
PP G P P + PP P P G+P+ SR PR+ G +
Sbjct: 60 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 119
Query: 71 WPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT-TTVSRVAPS-PGR 128
P P G P P P ++P P P + PP SR + S PG+
Sbjct: 120 GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK 179
Query: 129 PAGLHRSREPRPQDGTPPP--VDTPPRTARPRPAFTPRP 165
P G +PQ PPP PP +P P P
Sbjct: 180 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 218
Score = 44.7 bits (104), Expect = 4e-05
Identities = 43/149 (28%), Positives = 54/149 (36%), Gaps = 14/149 (9%)
Query: 27 PGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA--- 83
PG+ P P+ P Q PP PG P P R P +P P P G
Sbjct: 198 PGKPQGPPPQGGNKP---QGPP-PPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQP 253
Query: 84 ---PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT-TTVSRVAPS-PGRPAGLHRSREP 138
P P P ++P P P + PP + SR + S PG+P G
Sbjct: 254 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGN 313
Query: 139 RPQDGTPPP--VDTPPRTARPRPAFTPRP 165
+PQ PPP PP +P P P
Sbjct: 314 QPQGPPPPPGKPQGPPPQGGNKPQGPPPP 342
Score = 43.9 bits (102), Expect = 7e-05
Identities = 43/149 (28%), Positives = 53/149 (35%), Gaps = 14/149 (9%)
Query: 27 PGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA--- 83
PG+ P P+ P Q PP PG P P R P +P P P G
Sbjct: 136 PGKPQGPPPQGGNKP---QGPP-PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQP 191
Query: 84 ---PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPT-TTVSRVAPS-PGRPAGLHRSREP 138
P P P ++P P P + PP S+ A S PG+P G
Sbjct: 192 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGN 251
Query: 139 RPQDGTPPP--VDTPPRTARPRPAFTPRP 165
+PQ PPP PP +P P P
Sbjct: 252 QPQGPPPPPGKPQGPPPQGGNKPQGPPPP 280
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/136 (25%), Positives = 48/136 (35%), Gaps = 9/136 (6%)
Query: 27 PGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA--- 83
PG+ P P+ + + PPG P P P G P +P P P G
Sbjct: 280 PGKPQGPPPQGGSKSRSSRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 336
Query: 84 --PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQ 141
P P P S+ + +PP + PP + P PAG + + P
Sbjct: 337 QGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNN-PQGPPPPAGGNPQQPQAPP 395
Query: 142 DGTPPPVDTPPRTARP 157
G P PP+ RP
Sbjct: 396 AGQPQGPPRPPQGGRP 411
Score = 41.6 bits (96), Expect = 4e-04
Identities = 40/138 (28%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 34 SPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG---PLGAPLQDRAP 90
SP A P P G G P P + PQ P G P G P P
Sbjct: 28 SPSLIAGNPQGAPPQGGNKPQGPPSPPGK---------PQGPPPQGGNQPQGPPPPPGKP 78
Query: 91 SAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS-PGRPAGLHRSREPRPQDGTPPP-- 147
P ++P P P + PP SR S PG+P G +PQ PPP
Sbjct: 79 QGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK 138
Query: 148 VDTPPRTARPRPAFTPRP 165
PP +P P P
Sbjct: 139 PQGPPPQGGNKPQGPPPP 156
Score = 33.9 bits (76), Expect = 0.077
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 27 PGETLSPSPRAAALP---PLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQ----PWRPG 79
PG+ P P+ P P +P G P G +R P + PQQ P P
Sbjct: 322 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPP 381
Query: 80 PL--GAPLQDRAPSAHVPGSASRPTATPAPPRCSR--RPP 115
P G P Q +AP A +P P PP+ R RPP
Sbjct: 382 PPAGGNPQQPQAP------PAGQPQGPPRPPQGGRPSRPP 415
Score = 31.2 bits (69), Expect = 0.50
Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 3 PTCGENAASCRSGS---HFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKP 59
P G + S RS PP G P P + PP P P G KP
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG--KP 345
Query: 60 VSRGPRAGLREWPQQPWRPGPLGAPLQD----RAPSAHVPGSASRPTATPA-PPRCSRRP 114
P+ G + + P G P Q+ + P G+ +P A PA P+ RP
Sbjct: 346 QGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 405
Query: 115 P 115
P
Sbjct: 406 P 406
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 52.0 bits (123), Expect = 3e-07
Identities = 42/112 (37%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 22 ARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPL 81
A G L G L+ P A P + P AP P+P SRGPR GL PQ+P PGP
Sbjct: 876 AHGLLLGAPLA-GPGVEARTPADRGPSPAPAPAASPQPGSRGPRDGLGPEPQEP-PPGP- 932
Query: 82 GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRV-APSPGRPAGL 132
P A+ P A P PP PP+ + V PS G PA L
Sbjct: 933 ------------PPSPAAAPEAVPPPP----APPSYSDKGVQTPSKGTPAPL 968
Score = 33.5 bits (75), Expect = 0.10
Identities = 44/162 (27%), Positives = 61/162 (37%), Gaps = 15/162 (9%)
Query: 19 PPAARGRLPGETLSP-SPRAAALPPLQQRPPGAP-----GALGRPKPVSRGPRAGLREWP 72
PP PG+ P +PR++ P ++ G GA GR S+ P + + +
Sbjct: 618 PPGPARAPPGQPAEPDAPRSSPGPGAREEGAGGAATPEDGAGGRGSEGSQSPGSSVDDAE 677
Query: 73 QQPWRPGPLGAPLQ-DRAPSAHVPGSASRPTATPAPPRCSRRP--PTTTVSRVAPSPGRP 129
P R ++ R + V + PPR P P + APSP P
Sbjct: 678 DDPSRTLCEACNIRFSRHETYTVHKRYYCASRHDPPPRRPAAPPGPPGPAAPPAPSPAAP 737
Query: 130 AGLHRSRE--PRPQDGTPPPVDTPPRTARPRPAFTPRPVVGS 169
R R+ G PPP PP P P +PRP GS
Sbjct: 738 VRTRRRRKLYELHAAGAPPP---PPPGHAPAPE-SPRPGSGS 775
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/86 (32%), Positives = 30/86 (34%), Gaps = 23/86 (26%)
Query: 81 LGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRP 140
LGAPL A P P+ PAP +P PG SR PR
Sbjct: 881 LGAPLAGPGVEARTPADRG-PSPAPAPA-------------ASPQPG-------SRGPR- 918
Query: 141 QDGTPPPVDTPPRTARPRPAFTPRPV 166
DG P PP P PA P V
Sbjct: 919 -DGLGPEPQEPPPGPPPSPAAAPEAV 943
Score = 30.4 bits (67), Expect = 0.86
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 25/94 (26%)
Query: 95 PGSASRPTATPAPPRCSRR-------------PPTTTVSRVAPSPGRPA-------GLHR 134
PG A+ P +PA P +RR PP AP RP GL
Sbjct: 724 PGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGSGSGSGPGLAP 783
Query: 135 SREPRP-QDGTPPPVDTPPRTARPRPAFTPRPVV 167
+R P P DG P+D + RP P P P +
Sbjct: 784 ARSPGPAADG---PIDLSKKPRRPLPG-APAPAL 813
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 52.0 bits (123), Expect = 3e-07
Identities = 55/188 (29%), Positives = 63/188 (33%), Gaps = 28/188 (14%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPL----QQRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
PP G P + PP Q PP PG RP P G P +
Sbjct: 60 PPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGK 119
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPT---------ATPAPPRCSRRPPTT-TVSRVAP 124
P RP P G R P PG RP P P + PP SR A
Sbjct: 120 PERPPPQGGNQSHRPPPP--PGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSAR 177
Query: 125 S-PGRPAGLHRSREPRPQDGTPP--PVDTPPRTARP---------RPAFTPRPVVGSERP 172
S PG+P G + +PQ PP P PP P +P P P G P
Sbjct: 178 SPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPP 237
Query: 173 RQEQLRGP 180
R Q + P
Sbjct: 238 RPAQGQQP 245
Score = 47.4 bits (111), Expect = 7e-06
Identities = 47/151 (31%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 45 QRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRP--- 101
QRPP PG P P G P +P P G Q + P H PG RP
Sbjct: 48 QRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGN-QSQGPPPH-PGKPERPPPQ 105
Query: 102 -----TATPAPPRCSRRPPT---TTVSRVAPSPGR-----PAGLHRSREPRPQ----DGT 144
TP PP RPP R P PG+ P G ++S+ P P +G
Sbjct: 106 GGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGP 165
Query: 145 PPPVDTPPRTARPRPAFTPRPVVGSERPRQE 175
PP R+AR P P P+QE
Sbjct: 166 PPQEGNKSRSARSPPGKPQGP------PQQE 190
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/145 (27%), Positives = 48/145 (33%), Gaps = 17/145 (11%)
Query: 20 PAARGRLPGETLSPSPRAAALPPLQ-----QRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
P +G + P P PP Q RPP PG RP P G P +
Sbjct: 102 PPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGK 161
Query: 75 PWRPGPL--GAPLQDRAPSAHVPG----SASRPTATPAPPRCSRRPPT--TTVSRVAPSP 126
P P P R+P G ++P P P + PP AP
Sbjct: 162 PEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPA 221
Query: 127 GRPAGL----HRSREPRPQDGTPPP 147
G+P G R PRP G PP
Sbjct: 222 GKPQGPPPPPQGGRPPRPAQGQQPP 246
Score = 40.8 bits (94), Expect = 6e-04
Identities = 42/159 (26%), Positives = 55/159 (34%), Gaps = 23/159 (14%)
Query: 15 GSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
G+ PP R P + + S RPP PG RP P G P +
Sbjct: 112 GTPPPPGKPERPPPQGGNQS----------HRPPPPPGKPERPPPQGGNQSQGPPPHPGK 161
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHR 134
P P P +++ SA P P PP+ P P PAG +
Sbjct: 162 PEGPPPQEG---NKSRSARSP-----PGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNP 213
Query: 135 SREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPR 173
+ P G P PP+ RP PRP G + P+
Sbjct: 214 QQPQAPPAGKPQGPPPPPQGGRP-----PRPAQGQQPPQ 247
Score = 36.2 bits (82), Expect = 0.016
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 36/140 (25%)
Query: 58 KPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPP-RCSRRPPT 116
KP R P+ G QP RP P P P ++ P PP + RPP
Sbjct: 35 KPEGRRPQGG-----NQPQRPPP-----PPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQ 84
Query: 117 --TTVSRVAPSPGRPAGLHRSREPRPQ-----DGTPPPVDTPPRTARPRP-----AFTPR 164
P PG+P P PQ GTPPP P + RP P + P
Sbjct: 85 GGNQSQGPPPHPGKP------ERPPPQGGNQSQGTPPP---PGKPERPPPQGGNQSHRPP 135
Query: 165 PVVGS-ERPRQE---QLRGP 180
P G ERP + Q +GP
Sbjct: 136 PPPGKPERPPPQGGNQSQGP 155
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 51.6 bits (122), Expect = 4e-07
Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
Query: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Query: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171
G L PRP G+ P +PP RP V G++R
Sbjct: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 51.6 bits (122), Expect = 4e-07
Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
Query: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Query: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171
G L PRP G+ P +PP RP V G++R
Sbjct: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 51.6 bits (122), Expect = 4e-07
Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
Query: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Query: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171
G L PRP G+ P +PP RP V G++R
Sbjct: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 51.6 bits (122), Expect = 4e-07
Identities = 51/173 (29%), Positives = 65/173 (37%), Gaps = 32/173 (18%)
Query: 19 PPAARGRLP-----GETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQ 73
PP A P G L+ R++ + P PP AP LG P GP+ G P
Sbjct: 269 PPPAEFSYPVDNQRGSGLAGPKRSSVVSP--SHPPPAP-PLGSPP----GPKPGFAPPPA 321
Query: 74 QPWRPGPL-GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGL 132
P P P+ G P PG TP PP PP + P P PA
Sbjct: 322 PPPPPPPMIGIPPPPPPVGFGSPG-------TPPPPSPPSFPPHPDFAAPPPPPPPPAAD 374
Query: 133 HRSREP----RPQDGTPPPVDTPPRTARPRPAFT--------PRPVVGSERPR 173
+ + P +P G PPP PP P P FT P P+ + +P+
Sbjct: 375 YPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKPK 427
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 51.6 bits (122), Expect = 4e-07
Identities = 48/144 (33%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 14 SGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVS--RGPRAGLREW 71
SG P A GR P + P P PP P GAPG G P V RG G
Sbjct: 1238 SGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRG-EPGDCGL 1296
Query: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGR--P 129
P P PGP G P P P P P P + PGR P
Sbjct: 1297 PGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGP 1356
Query: 130 AGLHRSREPRPQDGTPPPVDTPPR 153
GL PR + G P VD PR
Sbjct: 1357 TGL---PGPRGEPGPPADVDDCPR 1377
Score = 41.2 bits (95), Expect = 5e-04
Identities = 50/157 (31%), Positives = 56/157 (35%), Gaps = 23/157 (14%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRP 78
PP RG L G PR P + P G PG LG P R AG P P
Sbjct: 769 PPGKRG-LSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGF------PGVP 821
Query: 79 GPLGAPLQDRAPSAHVPGSASRP--TATPAPPRCSRR-----PPTTTVSRVAPS-PGRPA 130
GP G + AP +PG P +P P + PP + P PGRP
Sbjct: 822 GPPGHSCERGAPG--IPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPG 879
Query: 131 -----GLHRSREPRPQDGTP-PPVDTPPRTARPRPAF 161
GL P DG P PP PR P F
Sbjct: 880 AHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGF 916
Score = 36.6 bits (83), Expect = 0.012
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 47 PPGAPGALGRPKPVSRG--PRAGLREWPQQPWRPGPLGAP-LQDRAPSAHVPGSASRPTA 103
PPG PG LGRP G G + +P P PG G P D AP PG P
Sbjct: 386 PPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGK--PGKPGSP-G 442
Query: 104 TPAPPRCSRRPPTTTVSRVAPSPGRPAGL 132
P P P ++ + +PG P G+
Sbjct: 443 LPGAPGLQGLPGSSVIYCSVGNPG-PQGI 470
Score = 34.7 bits (78), Expect = 0.045
Identities = 52/187 (27%), Positives = 62/187 (33%), Gaps = 29/187 (15%)
Query: 6 GENAASCRSGSHF--PPAARG--RLPGETLSP-SPRAAALPPLQQR-PPGAPGALGRPKP 59
G+ SG H PP G L GE P SP + P ++ PPG PG+ G P P
Sbjct: 1184 GQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGP 1243
Query: 60 VSRGPRAGLREWPQ--------QPWRPGPLGAP-----------LQDRAPSAHVPGSASR 100
RA ++ P P GP GAP L+ +PG
Sbjct: 1244 AGATGRAP-KDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPG- 1301
Query: 101 PTATPAPPRCSRRPPTTTVSRVAPSPG--RPAGLHRSREPRPQDGTPPPVDTPPRTARPR 158
P P PP P G P G H P + G P P T P
Sbjct: 1302 PPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPG 1361
Query: 159 PAFTPRP 165
P P P
Sbjct: 1362 PRGEPGP 1368
Score = 34.3 bits (77), Expect = 0.059
Identities = 55/209 (26%), Positives = 66/209 (31%), Gaps = 59/209 (28%)
Query: 16 SHF-PPAARGRLPGETLSPSPRAAA----LPPLQ-----QRPPGAPGALGRPKPVSRGPR 65
SHF PP +G PG P A+ LP +Q PG PG+ G P
Sbjct: 1079 SHFGPPGPKGE-PGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGM 1137
Query: 66 AGLREWPQQPWRPGPLG-------------------------------------APLQDR 88
GLR P + PGP G + L D
Sbjct: 1138 PGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDV 1197
Query: 89 APSAHV--------PGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRP 140
P V G P +P PR + PP S P P G R+ + P
Sbjct: 1198 GPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATG--RAPKDIP 1255
Query: 141 QDGTPPPVDTPPRTARPRPAFTPRPVVGS 169
G PP PP PR A P + GS
Sbjct: 1256 DPG-PPGDQGPPGPDGPRGAPGPPGLPGS 1283
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/82 (34%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 15 GSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
G P A G LPG P P L R G G G P P R G +P
Sbjct: 1386 GMRGPEGAMG-LPGMRGPSGPGCKGEPGLDGRR-GVDGVPGSPGPPGRKGDTGEDGYPGG 1443
Query: 75 PWRPGPLGAPLQDRAPSAHVPG 96
P PGP+G P P PG
Sbjct: 1444 PGPPGPIGDP----GPKGFGPG 1461
Score = 32.7 bits (73), Expect = 0.17
Identities = 51/192 (26%), Positives = 62/192 (32%), Gaps = 54/192 (28%)
Query: 15 GSHFPPAARGRLPGETLSPSPRAA-ALPPLQQRP--------PGAPGALGRP----KPVS 61
GS P +G+ PG+ P P LP L RP PG PG G P
Sbjct: 846 GSPGAPGGKGQ-PGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGP 904
Query: 62 RGPRA--GLREWPQQPWRPGPLGAPLQDRAPS----AHVPG------------------- 96
+GPR G +P + +PG G P P + +PG
Sbjct: 905 KGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGE 964
Query: 97 ----SASRPTATPAPP--------RCSRRPPTTTVSRVAPSPGRPAGLHRSREP--RPQD 142
S P PP R + P R P P G HR EP + Q
Sbjct: 965 MAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRG-EPGEKGQP 1023
Query: 143 GTPPPVDTPPRT 154
G P P P T
Sbjct: 1024 GPPGPPGPPGST 1035
Score = 31.6 bits (70), Expect = 0.38
Identities = 39/148 (26%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 6 GENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPR 65
G++ G P +GR GE P P + PG G G P P
Sbjct: 981 GDDGFPGERGDKGTPGMQGRR-GE-----PGRYGPPGFHRGEPGEKGQPGPPGPPGPPGS 1034
Query: 66 AGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS 125
GLR + P PG G P P A P P PP +P
Sbjct: 1035 TGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPG 1094
Query: 126 -PGR-----PAGLHRSREPRPQDGTPPP 147
PG GL + PR G P P
Sbjct: 1095 CPGHFGASGEQGLPGIQGPRGSPGRPGP 1122
Score = 30.8 bits (68), Expect = 0.66
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG--SA 98
PP P G G LG P P+ G+R P G G D+ P+ VPG
Sbjct: 66 PPGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKG----DKGPTG-VPGFPGL 120
Query: 99 SRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAG 131
P PP +P + + PG P G
Sbjct: 121 DGIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGG 153
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 27 PGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQ--PWRPGPLGAP 84
PG TL P L ++ G PG +G P P R +G+ ++ P PGP G P
Sbjct: 254 PGPTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDP 313
Score = 27.3 bits (59), Expect = 7.3
Identities = 42/178 (23%), Positives = 51/178 (28%), Gaps = 30/178 (16%)
Query: 6 GENAASCRSGSHFPPAARGRLPGETLSPSPRAA----ALPPLQQRPPGAPGALGRPKPVS 61
G + C G+ P +G++ G P+ L + P G PG G P
Sbjct: 454 GSSVIYCSVGNPGPQGIKGKV-GPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQG 512
Query: 62 RGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSR 121
GL W PGP GA P H PP VSR
Sbjct: 513 SKGDLGLPGWLGTKGDPGPPGAEGPPGLPGKH---------GASGPPGNKGAKGDMVVSR 563
Query: 122 VAPS------------PGRPAGLHRSREPRPQDGTPPPVD----TPPRTARPRPAFTP 163
V PG+P R + PP D TP P P P
Sbjct: 564 VKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPP 621
Score = 26.9 bits (58), Expect = 9.5
Identities = 27/94 (28%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 15 GSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
G H PP G PG P P+ GAPG G R G E P
Sbjct: 674 GRHGPPGFDGP-PGPKGFPGPQ------------GAPGLSGSDGHKGRPGTPGTAEIPGP 720
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPP 108
P G +G P S P P PP
Sbjct: 721 PGFRGDMGDP-------GFGGEKGSSPVGPPGPP 747
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 51.6 bits (122), Expect = 4e-07
Identities = 52/163 (31%), Positives = 57/163 (34%), Gaps = 24/163 (14%)
Query: 19 PPAARGRLPGETLSPSPRAAALPPL----QQRPPGAPGALGRPKPVSRGPRAGLREWPQQ 74
PP+ PG P P LPP + PP PG L P GP P Q
Sbjct: 220 PPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQ 279
Query: 75 PWRPGPLGAPLQDRAPSAHVPGSASRPTA----TPA----PPRCSRRPPTTTVSRVAPSP 126
P P + AP H P S P A PA PP PPT+ V AP
Sbjct: 280 LPPPAP---GVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGV 336
Query: 127 GRPA-GLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVG 168
PA G+H P G PP P P P P P G
Sbjct: 337 HPPAPGVH-----PPAPGVHPPA---PGVHPPAPGVHPPPSAG 371
Score = 48.5 bits (114), Expect = 3e-06
Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 20/157 (12%)
Query: 19 PPAARGRLPGETLSPSPRAAALPP-LQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWR 77
PP G LP + P+ A + PP Q PP APG + P PV P +G+ P
Sbjct: 252 PPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPG-VHPPAPVVHPPASGV-----HPPA 305
Query: 78 PGPLGAPLQDRAPSAHVPG-SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPA-GLHRS 135
PG + AP H P PT+ PP PP V AP PA G+H
Sbjct: 306 PG-----VHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVH-- 358
Query: 136 REPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERP 172
P P PP P+ PA P V + P
Sbjct: 359 -PPAPGVHPPPSAGVHPQAPGVHPA---APAVHPQAP 391
Score = 40.0 bits (92), Expect = 0.001
Identities = 50/197 (25%), Positives = 63/197 (31%), Gaps = 41/197 (20%)
Query: 2 VPTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVS 61
+P G + PP A G P + P + PP P APG + P P
Sbjct: 264 MPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPG-VHPPAPGV 322
Query: 62 RGPRAGLREWPQQPWRPG--PLGAPLQDRAPSAHVPGSASRPTA--TPAPPRCSRRPPTT 117
P +G+ P PG P + AP H P P A PP P
Sbjct: 323 HPPTSGV-----HPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAP 377
Query: 118 TVSRVAP-----SPG-----------------RPAGLHRSR---EPRP------QDGTPP 146
V AP +PG +P G+H S P+P G P
Sbjct: 378 GVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHP 437
Query: 147 PVDTPPRTARPRPAFTP 163
P PP P P+ P
Sbjct: 438 PTPMPPMLRPPLPSEGP 454
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 25/116 (21%)
Query: 45 QRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTAT 104
++PP P P V R P + P +P P L P P
Sbjct: 215 EKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPP---------------PPGGL 259
Query: 105 PAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRPA 160
P PP PPT P+P P G + P P P PV PP + PA
Sbjct: 260 PLPPM----PPT------GPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPA 305
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 51.2 bits (121), Expect = 5e-07
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 28 GETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQD 87
GE++ PS + + PP+QQ PG P A +P + G + P QP L PL
Sbjct: 291 GESVKPSLPSPSKPPIQQPTPGKPPA---QQPGHEKSQPGPAKPPAQP---SGLTKPLAQ 344
Query: 88 RAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPP 147
+ + P T PA P +PP PS S +P P+ PP
Sbjct: 345 QPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPS---------SEQPGPKALAQPP 395
Query: 148 VDTPPRTARPRPAFTPRPVVGSERPRQEQ 176
+P PA P VG+ +P +Q
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPKPLAQQ 424
Score = 47.8 bits (112), Expect = 5e-06
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 45/185 (24%)
Query: 35 PRAAALPPLQQRPP------GAPG-----ALGRPKPVSRGPRAGLREWPQQPWRP--GPL 81
P PPLQQ+PP PG G PK +S ++ P +P GP
Sbjct: 203 PEGIIKPPLQQQPPKPIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPT 262
Query: 82 GAPLQDRAP-----------------------SAHVPGSASRPTATPAPPRCSRRPPTTT 118
P D A +P + P P P + + P
Sbjct: 263 QTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHE 322
Query: 119 VSRVAPS--PGRPAGLHRSREPRPQDGTPPPVDTPPRTARP-----RPAFTPRPVVGSER 171
S+ P+ P +P+GL + +P GT P PP T +P PA P GSE+
Sbjct: 323 KSQPGPAKPPAQPSGLTKPLAQQP--GTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEK 380
Query: 172 PRQEQ 176
P EQ
Sbjct: 381 PSSEQ 385
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/164 (29%), Positives = 64/164 (39%), Gaps = 29/164 (17%)
Query: 25 RLPGETLSPSPRAA-ALPPLQQRPPGAPGA--LGRPKPVSRGPRAGLREWPQQPWRPGPL 81
+ PG T +P + P QQ PG A G KP S+ P G + P P +PGP
Sbjct: 432 KAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLP--GPAKPP--PQQPGPA 487
Query: 82 GAPLQDRA---PSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREP 138
P Q P + PGS P P P + PSP +P ++ P
Sbjct: 488 KPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK--------------PSPQQPGS---TKPP 530
Query: 139 RPQDGTPPPVDTPPRTARPRPAFTPRPV--VGSERPRQEQLRGP 180
Q G+ P P A+P + +PV GS +P Q P
Sbjct: 531 SQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSP 574
Score = 37.4 bits (85), Expect = 0.007
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 82 GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQ 141
G P++ +P + ++ PA PR R + +S P P P P P
Sbjct: 2364 GETFGQEKPASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPP-----PPPPPPP 2418
Query: 142 DGTPPPVDTPPRTARPRPAFTPR 164
PPP PP T+ P+P P+
Sbjct: 2419 PPPPPPPPLPPPTS-PKPTILPK 2440
Score = 35.4 bits (80), Expect = 0.027
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 54/195 (27%)
Query: 31 LSPSPRAAALPPLQQRPPGAPGALGR--------PKPVSRGPRAGLR-----EWPQ-QPW 76
+SP P A +P PPG G+ PKP + R L + P+ QP
Sbjct: 862 MSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQSRRFSLNLGSITDAPKSQPT 921
Query: 77 RP-----GPL---GAPLQDRA---------PSAHV---PGSASRPTATPAPPRCSRRPPT 116
P G L GA + +A P H PG+ + P+ P S+ PP
Sbjct: 922 TPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPK 981
Query: 117 TTVSRVAPSPGRPAGLHRSR--------EPRPQ----------DGTPPPV-DTPPRTARP 157
+T + P+P + + + EP+ + + PPP+ D+ TA P
Sbjct: 982 ST-GQAPPAPAKSIPVKKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPIKDSKSLTAEP 1040
Query: 158 RPAFTPRPVVGSERP 172
+ A P + S +P
Sbjct: 1041 QKAVLPTKLEKSPKP 1055
Score = 32.7 bits (73), Expect = 0.17
Identities = 38/148 (25%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 42 PLQQRPPGAPGALG---RPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSA 98
P Q P G+P +P+P R + P P P P P P +P
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPT 2431
Query: 99 S-RPTATPAPPRCSRRPPTTT-----------VSRVAPSPGRPAGLHRSREPRPQDGTPP 146
S +PT P P TT + V S G P + P P PP
Sbjct: 2432 SPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTAPPP---VPP 2488
Query: 147 PVDTPPR----TARP---RPAFTPRPVV 167
+ P T RP +P P+PV+
Sbjct: 2489 KPSSIPSGLVFTHRPEPSKPPIAPKPVI 2516
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 81 LGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRP 140
+ P++++ + + + PA S P +++ P+ RP S +
Sbjct: 2348 IALPMKEQLSTTYFTSGETFGQEKPASQLPSGSPSVSSL----PAKPRPFFRSSSLDISA 2403
Query: 141 QDGTPPPVDTPPRTARPRPAFTPRPVVGSERP 172
Q PPP PP P P P P S +P
Sbjct: 2404 QPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKP 2435
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 51.2 bits (121), Expect = 5e-07
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 28 GETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQD 87
GE++ PS + + PP+QQ PG P A +P + G + P QP L PL
Sbjct: 291 GESVKPSLPSPSKPPIQQPTPGKPPA---QQPGHEKSQPGPAKPPAQP---SGLTKPLAQ 344
Query: 88 RAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPP 147
+ + P T PA P +PP PS S +P P+ PP
Sbjct: 345 QPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPS---------SEQPGPKALAQPP 395
Query: 148 VDTPPRTARPRPAFTPRPVVGSERPRQEQ 176
+P PA P VG+ +P +Q
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPKPLAQQ 424
Score = 47.8 bits (112), Expect = 5e-06
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 45/185 (24%)
Query: 35 PRAAALPPLQQRPP------GAPG-----ALGRPKPVSRGPRAGLREWPQQPWRP--GPL 81
P PPLQQ+PP PG G PK +S ++ P +P GP
Sbjct: 203 PEGIIKPPLQQQPPKPIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPT 262
Query: 82 GAPLQDRAP-----------------------SAHVPGSASRPTATPAPPRCSRRPPTTT 118
P D A +P + P P P + + P
Sbjct: 263 QTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHE 322
Query: 119 VSRVAPS--PGRPAGLHRSREPRPQDGTPPPVDTPPRTARP-----RPAFTPRPVVGSER 171
S+ P+ P +P+GL + +P GT P PP T +P PA P GSE+
Sbjct: 323 KSQPGPAKPPAQPSGLTKPLAQQP--GTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEK 380
Query: 172 PRQEQ 176
P EQ
Sbjct: 381 PSSEQ 385
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/164 (29%), Positives = 64/164 (39%), Gaps = 29/164 (17%)
Query: 25 RLPGETLSPSPRAA-ALPPLQQRPPGAPGA--LGRPKPVSRGPRAGLREWPQQPWRPGPL 81
+ PG T +P + P QQ PG A G KP S+ P G + P P +PGP
Sbjct: 432 KAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLP--GPAKPP--PQQPGPA 487
Query: 82 GAPLQDRA---PSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREP 138
P Q P + PGS P P P + PSP +P ++ P
Sbjct: 488 KPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK--------------PSPQQPGS---TKPP 530
Query: 139 RPQDGTPPPVDTPPRTARPRPAFTPRPV--VGSERPRQEQLRGP 180
Q G+ P P A+P + +PV GS +P Q P
Sbjct: 531 SQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSP 574
Score = 37.4 bits (85), Expect = 0.007
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 82 GAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQ 141
G P++ +P + ++ PA PR R + +S P P P P P
Sbjct: 2364 GETFGQEKPASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPP-----PPPPPPP 2418
Query: 142 DGTPPPVDTPPRTARPRPAFTPR 164
PPP PP T+ P+P P+
Sbjct: 2419 PPPPPPPPLPPPTS-PKPTILPK 2440
Score = 35.4 bits (80), Expect = 0.027
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 54/195 (27%)
Query: 31 LSPSPRAAALPPLQQRPPGAPGALGR--------PKPVSRGPRAGLR-----EWPQ-QPW 76
+SP P A +P PPG G+ PKP + R L + P+ QP
Sbjct: 862 MSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQSRRFSLNLGSITDAPKSQPT 921
Query: 77 RP-----GPL---GAPLQDRA---------PSAHV---PGSASRPTATPAPPRCSRRPPT 116
P G L GA + +A P H PG+ + P+ P S+ PP
Sbjct: 922 TPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPK 981
Query: 117 TTVSRVAPSPGRPAGLHRSR--------EPRPQ----------DGTPPPV-DTPPRTARP 157
+T + P+P + + + EP+ + + PPP+ D+ TA P
Sbjct: 982 ST-GQAPPAPAKSIPVKKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPIKDSKSLTAEP 1040
Query: 158 RPAFTPRPVVGSERP 172
+ A P + S +P
Sbjct: 1041 QKAVLPTKLEKSPKP 1055
Score = 32.7 bits (73), Expect = 0.17
Identities = 38/148 (25%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 42 PLQQRPPGAPGALG---RPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSA 98
P Q P G+P +P+P R + P P P P P P +P
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPT 2431
Query: 99 S-RPTATPAPPRCSRRPPTTT-----------VSRVAPSPGRPAGLHRSREPRPQDGTPP 146
S +PT P P TT + V S G P + P P PP
Sbjct: 2432 SPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTAPPP---VPP 2488
Query: 147 PVDTPPR----TARP---RPAFTPRPVV 167
+ P T RP +P P+PV+
Sbjct: 2489 KPSSIPSGLVFTHRPEPSKPPIAPKPVI 2516
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 81 LGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRP 140
+ P++++ + + + PA S P +++ P+ RP S +
Sbjct: 2348 IALPMKEQLSTTYFTSGETFGQEKPASQLPSGSPSVSSL----PAKPRPFFRSSSLDISA 2403
Query: 141 QDGTPPPVDTPPRTARPRPAFTPRPVVGSERP 172
Q PPP PP P P P P S +P
Sbjct: 2404 QPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKP 2435
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 51.2 bits (121), Expect = 5e-07
Identities = 47/166 (28%), Positives = 60/166 (36%), Gaps = 10/166 (6%)
Query: 3 PTCGENAASCRSGSHFPPAARGRLPGETLSPSPRAAAL---PPLQQRPPGAPGALGRPKP 59
PT G+ R G PP + + P +L PP ++PPG P P
Sbjct: 211 PTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTN 270
Query: 60 VSRGPRAGLREWPQQPWRPGPLG--APLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTT 117
S P R PGP+ AP + S + + P A P R + PP
Sbjct: 271 ES-APELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPP 329
Query: 118 TV----SRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPPRTARPRP 159
V +R AP P P +H S P PPP TP P P
Sbjct: 330 PVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPP 375
Score = 50.8 bits (120), Expect = 6e-07
Identities = 49/148 (33%), Positives = 58/148 (39%), Gaps = 26/148 (17%)
Query: 33 PSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWP--QQPWRP--------GPLG 82
PS RAAA RPP A GRP+ + RA L E P Q+P P G
Sbjct: 116 PSSRAAA-----PRPP-VSAASGRPQDDTDSSRASLPELPRMQRPSLPDLSRPNTTSSTG 169
Query: 83 APLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQD 142
AP PG + TP P S+ P + P+PG+ LH RE P
Sbjct: 170 MKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQ--RLHPGREGPP-- 225
Query: 143 GTPPPVDTPP-----RTARPRPAFTPRP 165
PPPV PP RT + P P
Sbjct: 226 -APPPVKPPPSPVNIRTGPSGQSLAPPP 252
Score = 32.7 bits (73), Expect = 0.17
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 19 PPAARGRLPGETLSPSPRAAAL--PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQP- 75
P RG P S SP + PP + PP A P PV R G R+ P P
Sbjct: 288 PGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRN---GARDAPPPPP 344
Query: 76 -WRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTV 119
+R P + + P A P P P R R TTV
Sbjct: 345 PYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTV 389
Score = 30.0 bits (66), Expect = 1.1
Identities = 33/126 (26%), Positives = 42/126 (33%), Gaps = 15/126 (11%)
Query: 19 PPAARGRLPGETLSPS-PRAAALPPLQQR-------PPGAPGALGRPKPVSRGPRA---- 66
PP + PG PS P + P L QR PG L P P S P
Sbjct: 251 PPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLLSNR 310
Query: 67 ---GLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVA 123
R+ P + P P +++ A A P R + P R PP +
Sbjct: 311 PPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGP 370
Query: 124 PSPGRP 129
P P P
Sbjct: 371 PPPPPP 376
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,778,401
Number of Sequences: 37866
Number of extensions: 1099798
Number of successful extensions: 16197
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 1855
Number of HSP's that attempted gapping in prelim test: 6505
Number of HSP's gapped (non-prelim): 7454
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.