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Search of human proteins with 239754431
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754431 PREDICTED: hypothetical protein [Homo sapiens] 279 5e-76
gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo ... 219 4e-58
gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo ... 191 1e-49
gi|14249622 ajuba isoform 1 [Homo sapiens] 34 0.031
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 32 0.15
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 32 0.20
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 0.20
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 0.20
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 31 0.34
gi|12707580 paired-like homeobox 2b [Homo sapiens] 30 0.44
gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens] 30 0.58
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 30 0.58
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 29 1.3
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 29 1.3
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 29 1.3
gi|169202954 PREDICTED: hypothetical protein [Homo sapiens] 28 2.2
gi|4504211 guanylate cyclase 1, soluble, alpha 2 [Homo sapiens] 28 2.2
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 28 2.2
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 28 2.2
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 28 2.9
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 28 2.9
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 28 2.9
gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform... 27 3.8
gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1... 27 3.8
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 27 3.8
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 27 3.8
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 27 4.9
gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens] 27 4.9
gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens] 27 4.9
gi|239749959 PREDICTED: hypothetical protein [Homo sapiens] 27 4.9
>gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 279 bits (713), Expect = 5e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
Query: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLIYSKALQFLIFLHKRPPWVIKTEFQSLKSD 120
AKRMSARGRLRTRGGGERWAAGRGSWLQRLIYSKALQFLIFLHKRPPWVIKTEFQSLKSD
Sbjct: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLIYSKALQFLIFLHKRPPWVIKTEFQSLKSD 120
Query: 121 EELGKIQVTKEKNN 134
EELGKIQVTKEKNN
Sbjct: 121 EELGKIQVTKEKNN 134
>gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo
sapiens]
Length = 192
Score = 219 bits (559), Expect = 4e-58
Identities = 125/192 (65%), Positives = 127/192 (66%), Gaps = 58/192 (30%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
Query: 61 AKRMSARGRLRTR-----------------------GGGE------RWAAGRGSW----- 86
AKRMSARGRLRTR GGG R A R S+
Sbjct: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
Query: 87 ------------------------LQRLIYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE 122
L R +YSKALQFLIFLHKRPPWVIKTEFQSLKSDEE
Sbjct: 121 HASQCGLASPQSTAPPARRLGTGGLTRRVYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE 180
Query: 123 LGKIQVTKEKNN 134
LGKIQVTKEKNN
Sbjct: 181 LGKIQVTKEKNN 192
>gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
sapiens]
Length = 162
Score = 191 bits (486), Expect = 1e-49
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
Query: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRL 90
AKRMSARGRLRTRGGGERWAAGRGSWLQRL
Sbjct: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRL 90
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 34.3 bits (77), Expect = 0.031
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 6 QRTSFSGMNLLGPCPSG----RGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAA-- 59
QR SF G P+G R + +P S PP L+P++P + + +AS +A
Sbjct: 76 QRGSFEAPRYEGSFPAGPPPTRALPLPQ----SLPPDFRLEPTAPALSPRSSFASSSASD 131
Query: 60 AAKRMSARGRLRTRGGGERWAAG 82
A+K S RG L G G A G
Sbjct: 132 ASKPSSPRGSLLLDGAGAGGAGG 154
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 32.0 bits (71), Expect = 0.15
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
M F T ++ GP G P +W+ PP + + P A V +
Sbjct: 1 MAFDNFGTQIPILSARGPVNHG-----PLLWTWTAPPGAPILAAPPSRAHPRVRIASLHR 55
Query: 61 AKRMSARGRLRTRGGGERWAAGRG-----SWLQRLI 91
+ A G+ RG G WA G+G +W + L+
Sbjct: 56 FRIEDAHGQQEVRGEGTYWAVGKGVLSGRTWCEMLV 91
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 31.6 bits (70), Expect = 0.20
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 15 LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
L P P R G P SS S PPP QP S A G AAA + +A G
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418
Query: 73 RGGGERWAAGRGSW 86
+ G ++AA +W
Sbjct: 419 KDMGAQYAAASPAW 432
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 31.6 bits (70), Expect = 0.20
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 15 LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
L P P R G P SS S PPP QP S A G AAA + +A G
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418
Query: 73 RGGGERWAAGRGSW 86
+ G ++AA +W
Sbjct: 419 KDMGAQYAAASPAW 432
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 31.6 bits (70), Expect = 0.20
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 15 LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
L P P R G P SS S PPP QP S A G AAA + +A G
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418
Query: 73 RGGGERWAAGRGSW 86
+ G ++AA +W
Sbjct: 419 KDMGAQYAAASPAW 432
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 30.8 bits (68), Expect = 0.34
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 8 TSFSGMNLLG-PCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFA 58
+SF L G P+G L+PS+SS S PP C PS+P + G + A
Sbjct: 855 SSFHIQQLAGFSAPAGLSPLLPSSSS-SPPPGACGSPSAPTPSAGVAATTIA 905
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 30.4 bits (67), Expect = 0.44
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 17 GPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGG- 75
GP P+G P + P +P A A A+ AAAA +A G L GG
Sbjct: 217 GPSPAGA----PGAAGPGGPGG---EPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGP 269
Query: 76 GERWAAGRG 84
G+ WA G G
Sbjct: 270 GQGWAPGPG 278
>gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens]
Length = 286
Score = 30.0 bits (66), Expect = 0.58
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 8 TSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPET 48
+S GM GP PS G PS SS+ RP LQP P+T
Sbjct: 232 SSAPGMQAPGPPPSDPGAQAPSLSSF-RPRGLVLQPLLPQT 271
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 30.0 bits (66), Expect = 0.58
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 3 FHKQRTSFSGMNLLGP--CPSGRGILMPSTSSWSRPPPHCLQPSSP 46
FH +R F LL P CP R +P+T+ + PPP P P
Sbjct: 459 FHPRRRGF----LLDPAFCPHRRRGFLPATAFYPPPPPRLFAPPPP 500
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 28.9 bits (63), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 29 STSSWSRPPPHCLQPSSPETAKGAVY 54
S WS P PHC +P + + AVY
Sbjct: 146 SQGQWSTPKPHCQVNRTPHSERRAVY 171
>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
sapiens]
Length = 373
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 16 LGPCPSGRGILMPSTSSWSRPPPHCLQ--PSSPETAK 50
LGP +G L ST+ W R P C+ P+S TA+
Sbjct: 62 LGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQ 98
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 16 LGPCPSGRGILMPSTSSWSRPPPHCLQ--PSSPETAK 50
LGP +G L ST+ W R P C+ P+S TA+
Sbjct: 62 LGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQ 98
>gi|169202954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 17 GPCPSGRGILMPSTS---SWSRPPPHCLQPSSPET 48
GP G IL P +W R PH L PSSP T
Sbjct: 50 GPQVLGYVILQPHKGPRRAWEREIPHTLLPSSPPT 84
>gi|4504211 guanylate cyclase 1, soluble, alpha 2 [Homo sapiens]
Length = 732
Score = 28.1 bits (61), Expect = 2.2
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 9 SFS--GMNLLGPCPSGRGILMPSTSSW--SRPPPHCLQPS----------SPETAKGAVY 54
SFS G + L P G S W SR PP L+PS +P A A
Sbjct: 10 SFSSLGSDYLETSPEEEGECPLSRLCWNGSRSPPGPLEPSPAAAAAAAAPAPTPAASAAA 69
Query: 55 ASFAAAAKRMSARGRLRTRGGGE 77
A+ A A+R+ R R+ GE
Sbjct: 70 AAATAGARRVQRRRRVNLDSLGE 92
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 28.1 bits (61), Expect = 2.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 29 STSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGS 85
+ SS S P P ++P + S + +A + G R+ GGG AG GS
Sbjct: 95 TASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGS 151
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 37 PPHCLQPSSPETA--KGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSW 86
PPH PSS + A + + AA+ + R + GGG AA RGSW
Sbjct: 1258 PPHSPPPSSRQLLGPNAAALSRYLAASYISQSLARRQGPGGGAP-AASRGSW 1308
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 17 GPCPSGRGILMPSTSSWSRPPPHCLQPSSPE 47
GP P G + PS SSWS P QP++P+
Sbjct: 842 GPPPPPPGNVRPSNSSWSSGP----QPATPK 868
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 17 GPCPSGRGILMPSTSSWSRPPPHCLQPSSPE 47
GP P G + PS SSWS P QP++P+
Sbjct: 842 GPPPPPPGNVRPSNSSWSSGP----QPATPK 868
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 27.7 bits (60), Expect = 2.9
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 21 SGRGILMPSTSSWSRPPPHCLQPSS-----------PETAKGAVYASFAAAAKRMSARGR 69
S G PS S W+ P + PS+ T + +AS +A+ SA G
Sbjct: 181 SASGASTPSDSGWASPSVFWVSPSTSWASSPSDFGWASTPSDSGWASSSASCISPSASGA 240
Query: 70 LRTRGGGERWAAGRGSWL 87
+ G WA+ SW+
Sbjct: 241 STSSDSG--WASPSASWV 256
Score = 27.3 bits (59), Expect = 3.8
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 28 PSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSW 86
PS S W+ C+ PS+ + + + +A +S + WA+ SW
Sbjct: 220 PSDSGWASSSASCISPSASGASTSSDSGWASPSASWVSTSTSRASTSSDSGWASSSASW 278
Score = 26.6 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 20 PSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERW 79
PS G +PS S W+ P S T + +ASF+A+ + + W
Sbjct: 39 PSASGASIPSDSGWASP-----SASGASTPSNSGWASFSASWASIPS---------DSGW 84
Query: 80 AAGRGSW 86
A+ SW
Sbjct: 85 ASPSASW 91
Score = 26.6 bits (57), Expect = 6.4
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 20 PSGRGILMPSTSSWSRPPPHCLQPSSPE--TAKGAVYASFAAAAKRMSARGRLRTRGGGE 77
PS G PS S W+ P SS + A + S +A+ SA G G
Sbjct: 134 PSASGASTPSDSGWASPSASWASTSSDSGWASPSASWTSPSASCASSSASGASTPSDSG- 192
Query: 78 RWAAGRGSWL 87
WA+ W+
Sbjct: 193 -WASPSVFWV 201
Score = 26.2 bits (56), Expect = 8.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 20 PSGRGILMPSTSSWSRPPPH-CLQPSSPETAKGAVYASFAA 59
PS G PS S W+ P PS+P G+ + A
Sbjct: 384 PSASGASTPSDSGWASPSASGASMPSAPSLCPGSCFPQLTA 424
>gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform 2
[Homo sapiens]
Length = 642
Score = 27.3 bits (59), Expect = 3.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 30 TSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGER 78
T+S S PPH +Q S +++ A +++ + L R GG++
Sbjct: 169 TASKSANPPHTIQASEEQSSTPAPVKKSGKLRQQIDVKAELEKRQGGKQ 217
>gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1
[Homo sapiens]
Length = 684
Score = 27.3 bits (59), Expect = 3.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 30 TSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGER 78
T+S S PPH +Q S +++ A +++ + L R GG++
Sbjct: 211 TASKSANPPHTIQASEEQSSTPAPVKKSGKLRQQIDVKAELEKRQGGKQ 259
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 3.8
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 42 QPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGER-----WAAGRG 84
QPS+ + A+ S +K S RGR+R R R W AG G
Sbjct: 170 QPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSG 217
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 27.3 bits (59), Expect = 3.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 21 SGRGILMPSTSSWSRPPPHCLQPSSPETAKG-----AVYASFAAAAKRMSARGRLRTRGG 75
+GR L T+ R PPH L P P +G A+ AAAA +A L + G
Sbjct: 153 AGRDDLHAGTALHHRGPPH-LGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAG 211
Query: 76 GER 78
G++
Sbjct: 212 GQQ 214
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 26.9 bits (58), Expect = 4.9
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 17 GPCPSGR------GILMPSTSSWSR-----PPPHCLQPSSPETAKGAVYASFAAAAKRMS 65
GP P GR G P + SR PPP +P T GA A R+S
Sbjct: 152 GPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLS 211
Query: 66 ---ARGRLRTRGGGERWAAGRGS 85
+ G+ R + G + +AG G+
Sbjct: 212 WPESEGKPRVK--GSKSSAGTGA 232
>gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens]
Length = 161
Score = 26.9 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 39 HCLQPSSPETAKGAVYASFAA-AAKRMSARGRLRTRGGGERWAAGRGSWLQRLI 91
+CL P +G VY F A+R+ R +GG R +GRG W L+
Sbjct: 20 YCLNPRY----RGRVYVGFTVNTARRVQQHNGGRKKGGAWR-TSGRGPWEMVLV 68
>gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]
Length = 275
Score = 26.9 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 39 HCLQPSSPETAKGAVYASFAA-AAKRMSARGRLRTRGGGERWAAGRGSWLQRLI 91
+CL P +G VY F A+R+ R +GG R +GRG W L+
Sbjct: 20 YCLNPRY----RGRVYVGFTVNTARRVQQHNGGRKKGGAWR-TSGRGPWEMVLV 68
>gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 959
Score = 26.9 bits (58), Expect = 4.9
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 18 PCPSGRGILMP-STSSWSRPPP---HCLQPS--SPETAKGAVYASFAAAAKRMSARGRLR 71
P P+ L+P ST + P P CL + SP A GA A RM L
Sbjct: 532 PGPTRLQCLLPRSTGTGPEPGPTRFQCLLSAACSPGAAVGA------GPAGRMLMAEPLV 585
Query: 72 TRGGGERWAAGRGSWL-QRLIYSKALQFLIFLHKRPPWVIKTEFQSLKSDEELGKIQV 128
TRGGG R G G+ L Q L KA + L P ++++ +SL E ++ V
Sbjct: 586 TRGGGNR--LGEGTTLAQHLQVDKARAPSLALRSLP---LRSQAESLGLGERCEQVTV 638
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,311,703
Number of Sequences: 37866
Number of extensions: 305134
Number of successful extensions: 1340
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 82
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.