Guide to the Human Genome
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Name: LOC100290769 Sequence: fasta or formatted (162aa) NCBI GI: 239748932
Description:

PREDICTED: hypothetical protein XP_002346861

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         17           4
 C cysteine            1.9          3           1
 D aspartate           0.0          0           0
 E glutamate           1.9          3           1
 F phenylalanine       3.1          5           1
 G glycine            14.8         24           3
 H histidine           3.1          5           1
 I isoleucine          0.6          1           1
 K lysine              3.1          5           1
 L leucine             6.2         10           2
 M methionine          2.5          4           1
 N asparagine          1.9          3           1
 P proline            12.3         20           3
 Q glutamine           3.7          6           1
 R arginine           13.0         21           2
 S serine             11.7         19           2
 T threonine           5.6          9           1
 V valine              0.6          1           1
 W tryptophan          2.5          4           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346861 
LOC100287407          0.898   PREDICTED: hypothetical protein XP_002342704 
LOC100293457          0.516   PREDICTED: hypothetical protein 
FLJ31945              0.047   PREDICTED: hypothetical protein 
FLJ31945              0.047   PREDICTED: hypothetical protein 
LOC100293385          0.043   PREDICTED: hypothetical protein 
LOC100290381          0.043   PREDICTED: hypothetical protein XP_002346884 
LOC100289601          0.043   PREDICTED: hypothetical protein XP_002342725 
ATXN2                 0.040   ataxin 2 
LOC100288108          0.037   PREDICTED: hypothetical protein 
LOC100288108          0.037   PREDICTED: hypothetical protein XP_002342919 
JUB                   0.037   ajuba isoform 1 
LOC100130360          0.037   PREDICTED: hypothetical protein 
PLEKHG2               0.037   common-site lymphoma/leukemia guanine nucleotide ex...
HCN4                  0.034   hyperpolarization activated cyclic nucleotide-gated p...
LOC100289782          0.034   PREDICTED: hypothetical protein XP_002347588 
LOC651986             0.034   PREDICTED: similar to forkhead box L2 
FGF2                  0.031   fibroblast growth factor 2 
DVL2                  0.031   dishevelled 2 
LOC729570             0.031   PREDICTED: hypothetical protein 
LOC729570             0.031   PREDICTED: hypothetical protein 
LOC729570             0.031   PREDICTED: hypothetical protein 
LACTB                 0.031   lactamase, beta isoform a 
LACTB                 0.031   lactamase, beta isoform b 
ARID1B                0.031   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.031   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.031   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
FOXL2                 0.028   forkhead box L2 
LOC100292869          0.028   PREDICTED: hypothetical protein 
LOC100287151          0.028   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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