Guide to the Human Genome
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Name: GIYD1 Sequence: fasta or formatted (275aa) NCBI GI: 62868208
Description:

GIY-YIG domain containing 1 isoform 1

Referenced in:

Replication Proteins

Other entries for this name:
alt prot [161aa] GIY-YIG domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         25           2
 C cysteine            4.7         13           2
 D aspartate           4.0         11           2
 E glutamate           7.3         20           2
 F phenylalanine       3.6         10           2
 G glycine             8.7         24           2
 H histidine           4.0         11           1
 I isoleucine          1.1          3           1
 K lysine              1.5          4           2
 L leucine            12.0         33           2
 M methionine          1.5          4           1
 N asparagine          1.1          3           1
 P proline            11.6         32           4
 Q glutamine           4.4         12           2
 R arginine            9.1         25           3
 S serine              2.5          7           2
 T threonine           3.3          9           1
 V valine              5.8         16           2
 W tryptophan          3.3          9           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GIY-YIG domain containing 1 isoform 1 
GIYD2                 1.000   GIY-YIG domain containing 2 isoform 1 
GIYD1                 0.276   GIY-YIG domain containing 1 isoform 2 
GIYD2                 0.276   GIY-YIG domain containing 2 isoform 2 
RNF19B                0.026   ring finger protein 19B isoform a 
RNF19B                0.026   ring finger protein 19B isoform b 
SYDE1                 0.026   synapse defective 1, Rho GTPase, homolog 1 
RAPH1                 0.024   Ras association and pleckstrin homology domains 1 is...
PSORS1C2              0.023   SPR1 protein 
PELP1                 0.021   proline, glutamic acid and leucine rich protein 1 [...
WHAMM                 0.021   WAS protein homolog associated with actin, golgi me...
CBX6                  0.021   chromobox homolog 6 
BAT2D1                0.021   HBxAg transactivated protein 2 
LOC100128074          0.019   PREDICTED: hypothetical protein 
ASXL3                 0.019   additional sex combs like 3 
IGFBP2                0.017   insulin-like growth factor binding protein 2, 36kDa ...
DRD4                  0.017   dopamine receptor D4 
LOC100290265          0.017   PREDICTED: hypothetical protein XP_002346787 
BAI1                  0.017   brain-specific angiogenesis inhibitor 1 precursor [...
RGAG4                 0.017   retrotransposon gag domain containing 4 
CHKA                  0.017   choline kinase alpha isoform b 
CHKA                  0.017   choline kinase alpha isoform a 
MED19                 0.017   mediator complex subunit 19 
COL17A1               0.017   alpha 1 type XVII collagen 
ESPN                  0.017   espin 
HCN2                  0.016   hyperpolarization activated cyclic nucleotide-gated...
LMOD2                 0.016   leiomodin 2 (cardiac) 
ZNF827                0.016   zinc finger protein 827 
ZIC5                  0.016   zinc finger protein of the cerebellum 5 
SPRED3                0.016   sprouty-related, EVH1 domain containing 3 isoform a...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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