Guide to the Human Genome
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Name: LOC100293457 Sequence: fasta or formatted (134aa) NCBI GI: 239754431
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         11           4
 C cysteine            1.5          2           1
 D aspartate           0.7          1           1
 E glutamate           4.5          6           2
 F phenylalanine       4.5          6           1
 G glycine             9.0         12           3
 H histidine           2.2          3           1
 I isoleucine          3.7          5           1
 K lysine              7.5         10           1
 L leucine             9.0         12           2
 M methionine          3.0          4           1
 N asparagine          2.2          3           2
 P proline             7.5         10           3
 Q glutamine           4.5          6           1
 R arginine            9.0         12           1
 S serine             11.2         15           2
 T threonine           4.5          6           1
 V valine              2.2          3           1
 W tryptophan          3.0          4           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287407          0.764   PREDICTED: hypothetical protein XP_002342704 
LOC100290769          0.654   PREDICTED: hypothetical protein XP_002346861 
JUB                   0.035   ajuba isoform 1 
LOC651986             0.028   PREDICTED: similar to forkhead box L2 
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HCN4                  0.024   hyperpolarization activated cyclic nucleotide-gated p...
PHOX2B                0.020   paired-like homeobox 2b 
OSCAR                 0.020   osteoclast-associated receptor isoform 1 
LOC100288993          0.020   PREDICTED: hypothetical protein XP_002342967 
GABBR1                0.016   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
LOC388199             0.016   PREDICTED: hypothetical protein LOC388199 
LOC388199             0.016   hypothetical protein LOC388199 
LOC100127946          0.012   PREDICTED: hypothetical protein 
GUCY1A2               0.012   guanylate cyclase 1, soluble, alpha 2 
UBQLN4                0.012   ataxin-1 ubiquitin-like interacting protein 
PLEKHG2               0.012   common-site lymphoma/leukemia guanine nucleotide ex...
TNRC6B                0.012   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.012   trinucleotide repeat containing 6B isoform 1 
LOC100133915          0.012   PREDICTED: hypothetical protein 
HBS1L                 0.008   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.008   Hsp70 subfamily B suppressor 1-like protein isoform 1...
C9orf66               0.008   hypothetical protein LOC157983 
POU3F3                0.008   POU class 3 homeobox 3 
AGAP2                 0.008   centaurin, gamma 1 isoform PIKE-L 
GIYD1                 0.008   GIY-YIG domain containing 1 isoform 2 
GIYD1                 0.008   GIY-YIG domain containing 1 isoform 1 
LOC100294450          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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