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Search of human proteins with 11863154
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11863154 archain isoform 1 [Homo sapiens]
(511 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11863154 archain isoform 1 [Homo sapiens] 1015 0.0
gi|214010212 archain isoform 2 [Homo sapiens] 847 0.0
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom... 42 0.002
gi|194473724 adaptor-related protein complex 1, mu 1 subunit iso... 40 0.007
gi|14210504 adaptor-related protein complex 1, mu 1 subunit isof... 40 0.007
gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo... 39 0.009
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 37 0.056
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 37 0.056
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 37 0.056
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 37 0.056
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 37 0.056
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 37 0.056
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 37 0.056
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 37 0.056
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 37 0.056
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 37 0.056
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens] 36 0.095
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens] 36 0.095
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens] 36 0.095
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.21
gi|70906430 adaptor-related protein complex 2, sigma 1 subunit i... 35 0.21
gi|33356148 formin-like 1 [Homo sapiens] 35 0.21
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 34 0.28
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 34 0.28
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 34 0.28
gi|189409104 adaptor-related protein complex 4, sigma 1 subunit ... 34 0.28
gi|52426743 cisplatin resistance-associated overexpressed protei... 34 0.36
gi|19923485 cisplatin resistance-associated overexpressed protei... 34 0.36
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 33 0.81
gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [H... 32 1.1
>gi|11863154 archain isoform 1 [Homo sapiens]
Length = 511
Score = 1015 bits (2624), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180
YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180
Query: 181 PGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVD 240
PGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVD
Sbjct: 181 PGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVD 240
Query: 241 KLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGM 300
KLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGM
Sbjct: 241 KLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGM 300
Query: 301 IMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVG 360
IMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVG
Sbjct: 301 IMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVG 360
Query: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420
VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP
Sbjct: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420
Query: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCN 480
VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCN
Sbjct: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCN 480
Query: 481 IQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
IQVTKVTQVDGNSPVRFSTETTFLVDKYEIL
Sbjct: 481 IQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>gi|214010212 archain isoform 2 [Homo sapiens]
Length = 423
Score = 847 bits (2187), Expect = 0.0
Identities = 422/423 (99%), Positives = 423/423 (100%)
Query: 89 VIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVR 148
+IPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVR
Sbjct: 1 MIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVR 60
Query: 149 ETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMITETIIETD 208
ETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMITETIIETD
Sbjct: 61 ETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMITETIIETD 120
Query: 209 KPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPP 268
KPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPP
Sbjct: 121 KPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPP 180
Query: 269 INMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQ 328
INMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQ
Sbjct: 181 INMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQ 240
Query: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNG 388
THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNG
Sbjct: 241 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNG 300
Query: 389 CDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAK 448
CDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAK
Sbjct: 301 CDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAK 360
Query: 449 NKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKY 508
NKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKY
Sbjct: 361 NKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKY 420
Query: 509 EIL 511
EIL
Sbjct: 421 EIL 423
>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
sapiens]
Length = 453
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 64 LYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRE 123
LY+V+ T++N + LE L + ++ +YC +L E IS + + DE++ GY +
Sbjct: 64 LYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYGYVQ 123
Query: 124 NVNLAQIRTFTEMDSHEEKVF 144
+ +R F + ++ K F
Sbjct: 124 TTSTEMLRNFIQTEAVVSKPF 144
>gi|194473724 adaptor-related protein complex 1, mu 1 subunit
isoform 1 [Homo sapiens]
Length = 435
Score = 39.7 bits (91), Expect = 0.007
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 5 AAAVCTKAGKAIVSRQFV-EMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEK 63
A V GK ++ R + ++ + +E + + G + VR+++
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 64
Query: 64 LYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRE 123
LY+V + KN+ + L +V EY + LEE I ++ + DE++ GY +
Sbjct: 65 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 124
Query: 124 NVNLAQIRTFTEMDSHE 140
+ ++ + + H+
Sbjct: 125 TTDSKILQEYITQEGHK 141
>gi|14210504 adaptor-related protein complex 1, mu 1 subunit isoform
2 [Homo sapiens]
Length = 423
Score = 39.7 bits (91), Expect = 0.007
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 5 AAAVCTKAGKAIVSRQFV-EMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEK 63
A V GK ++ R + ++ + +E + + G + VR+++
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 64
Query: 64 LYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRE 123
LY+V + KN+ + L +V EY + LEE I ++ + DE++ GY +
Sbjct: 65 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 124
Query: 124 NVNLAQIRTFTEMDSHE 140
+ ++ + + H+
Sbjct: 125 TTDSKILQEYITQEGHK 141
>gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo
sapiens]
Length = 423
Score = 39.3 bits (90), Expect = 0.009
Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 13 GKAIVSRQFV-EMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITT 71
GK ++SR + ++ ++IE + + G + V +++ LY+V T+
Sbjct: 13 GKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSNLYLVATTS 72
Query: 72 KNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIR 131
KN+N L V EY + LEE I ++ + DE++ G+ + + ++
Sbjct: 73 KNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQ 132
Query: 132 TFTEMDSHE 140
+ S++
Sbjct: 133 EYITQQSNK 141
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2208 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2259
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2260 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2314
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2315 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2354
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2534 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2583
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2212 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2263
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2264 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2318
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2319 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2358
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2538 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2587
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2208 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2259
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2260 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2314
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2315 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2354
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2534 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2583
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2176 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2227
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2228 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2282
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2283 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2322
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2502 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2551
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2345 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2396
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2397 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2451
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2452 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2491
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2671 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2720
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2186 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2237
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2238 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2292
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2293 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2332
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2512 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2561
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2194 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2245
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2246 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2300
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2301 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2340
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2520 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2569
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 36.6 bits (83), Expect = 0.056
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETE--SVRYVYQPMEKLYMVLITTKNSNILEDL 80
E+ R + E AA +Q + VE E SVR + + KL + + IL D
Sbjct: 2235 ELQRLKAEATEAA--------RQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDK 2286
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
+ + F + E + +++E L A E L +LAQ R E E
Sbjct: 2287 DNTQRFLQEEAEKMK-----QVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2341
Query: 141 EKVFRAVRETQEREAKAEMRRKAKEL--QQARRDAERQGKKA 180
+ +AV+E +A+AE+ ++ KEL +QARR E + + A
Sbjct: 2342 K--MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMA 2381
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAE--MRRKAKELQQARRDAERQ 176
Q R +M+ +++ ++ E + R+ +AE +RRK +ELQQ + +Q
Sbjct: 2561 QQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQRRQQ 2610
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 36.6 bits (83), Expect = 0.056
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 18/210 (8%)
Query: 202 ETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIM---SSSMGKRT 258
+T ++ KP++ R + LK G+ GK+ +K K++ M S+S
Sbjct: 724 DTTDKSSKPQIKRGKRRYCNTEECLKTGSPGKK----EEKAKNKESLCMENSSNSSSDED 779
Query: 259 SEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVE 318
E TK P + ++ + K T G G + + +L SD++ R
Sbjct: 780 EEETKAKMTPTKKYN-GLEEKRKSLRTTGFYSGFSEVAEKRIKLLNNSDERLQNSRAKDR 838
Query: 319 NEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTI 378
+ +Q Q K+LF+ +P P + GV + LQT E
Sbjct: 839 KDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHPAP---EEGVAEESLQTVAEE-----E 890
Query: 379 NCWPS-ESGNGCDVNIEYE-LQEDNLELND 406
+C PS E VN++ + ++E +E+ND
Sbjct: 891 SCSPSVELEKPPPVNVDSKPIEEKTVEVND 920
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 36.6 bits (83), Expect = 0.056
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 18/210 (8%)
Query: 202 ETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIM---SSSMGKRT 258
+T ++ KP++ R + LK G+ GK+ +K K++ M S+S
Sbjct: 810 DTTDKSSKPQIKRGKRRYCNTEECLKTGSPGKK----EEKAKNKESLCMENSSNSSSDED 865
Query: 259 SEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVE 318
E TK P + ++ + K T G G + + +L SD++ R
Sbjct: 866 EEETKAKMTPTKKYN-GLEEKRKSLRTTGFYSGFSEVAEKRIKLLNNSDERLQNSRAKDR 924
Query: 319 NEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTI 378
+ +Q Q K+LF+ +P P + GV + LQT E
Sbjct: 925 KDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHPAP---EEGVAEESLQTVAEE-----E 976
Query: 379 NCWPS-ESGNGCDVNIEYE-LQEDNLELND 406
+C PS E VN++ + ++E +E+ND
Sbjct: 977 SCSPSVELEKPPPVNVDSKPIEEKTVEVND 1006
>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
Length = 1471
Score = 35.8 bits (81), Expect = 0.095
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 139 HEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQ--------GKKAPGFGGFGSSA 190
+ E+++ ++R E K R + + +RD +++ G +P G G S
Sbjct: 1107 NSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKRDGKKECDIVSRDGGAASPATEGRGGSE 1166
Query: 191 VSGGSTAAMITETIIETDKPKVAPAP-ARPSGP 222
V GG TA +++ T P+ P P AR P
Sbjct: 1167 VEGGRTALDNKTSLLNTQPPRAFPGPRARDYNP 1199
>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
Length = 1479
Score = 35.8 bits (81), Expect = 0.095
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 139 HEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQ--------GKKAPGFGGFGSSA 190
+ E+++ ++R E K R + + +RD +++ G +P G G S
Sbjct: 1115 NSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKRDGKKECDIVSRDGGAASPATEGRGGSE 1174
Query: 191 VSGGSTAAMITETIIETDKPKVAPAP-ARPSGP 222
V GG TA +++ T P+ P P AR P
Sbjct: 1175 VEGGRTALDNKTSLLNTQPPRAFPGPRARDYNP 1207
>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
Length = 1538
Score = 35.8 bits (81), Expect = 0.095
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 139 HEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQ--------GKKAPGFGGFGSSA 190
+ E+++ ++R E K R + + +RD +++ G +P G G S
Sbjct: 1174 NSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKRDGKKECDIVSRDGGAASPATEGRGGSE 1233
Query: 191 VSGGSTAAMITETIIETDKPKVAPAP-ARPSGP 222
V GG TA +++ T P+ P P AR P
Sbjct: 1234 VEGGRTALDNKTSLLNTQPPRAFPGPRARDYNP 1266
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 138 SHEEKVFRAVRETQEREAK-AEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGST 196
S K + +E +ER K +E + +KEL++ + + + + G G +
Sbjct: 189 SKTSKPHKVTKEHRERPRKDSESKSSSKELEREQAKSSKDTSRKLGEGRLPKEEKAPPPK 248
Query: 197 AAM------ITETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIM 250
AA + ET +E+ PK P P P P + K A K K
Sbjct: 249 AAFKEPKMALKETKLESTSPKGGPPPPPPPPPRASSKRPATADSPKPSAKKQKK------ 302
Query: 251 SSSMGKRTSEAT 262
SSS G R++ T
Sbjct: 303 SSSKGSRSAPGT 314
>gi|70906430 adaptor-related protein complex 2, sigma 1 subunit
isoform AP17 [Homo sapiens]
Length = 142
Score = 34.7 bits (78), Expect = 0.21
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 11 KAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNT--GKQHTFVETESVRYVYQPMEKLYMVL 68
+AGK +++ +++ + L+ ++ K FVE + + +Y+ LY +
Sbjct: 10 RAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCI 69
Query: 69 ITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
N N L LE + F V+ EY + E ++ + + + DE+ G
Sbjct: 70 CVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 34.7 bits (78), Expect = 0.21
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 29/229 (12%)
Query: 32 LLAAFPKLMNT-GKQHTFV--------ETESVRYVYQPMEKLYMVLITTKNSN--ILEDL 80
+LAAF G+QH F E ++ ++ M+ + +V+ + +N N +
Sbjct: 289 ILAAFDNFKEVCGEQHRFEKLMEYFRNEDSNIDFMVACMQFINIVVHSVENMNFRVFLQY 348
Query: 81 ETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE 140
E L + E R E +++ + ++ AL A + E+
Sbjct: 349 EFTHLGLDLYLERLRLTESDKLQVQIQAYLDNIFDVGALLEDTETKNAVLEHMEELQEQV 408
Query: 141 EKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMI 200
+ +R+ E E+ A++ K+L QAR++ E ++ F S G S
Sbjct: 409 ALLTERLRDA-ENESMAKIAELEKQLSQARKELETLRER------FSESTAMGASR---- 457
Query: 201 TETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETI 249
+P+ AP PA P+ PS AL+L + E + L+ G+ +
Sbjct: 458 -----RPPEPEKAP-PAAPTRPS-ALELKVEELEEKGLIRILRGPGDAV 499
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 34.3 bits (77), Expect = 0.28
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 195 STAAMITETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSM 254
++ A T + ++T+ + P + +K K G KG +V + S MS++M
Sbjct: 105 TSPAPSTSSTVKTEGAEATPGAQKRKKSTKE-KAGPKGSKVSEEQTQPPSPAGAGMSTAM 163
Query: 255 GKRTSEATKMHAPPINMESVHMKIEEKITLTCGRD 289
G+ S T + APP + + + K K +T R+
Sbjct: 164 GRSPSPKTSLSAPPNSSSTENPKTVAKCQVTPRRN 198
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 34.3 bits (77), Expect = 0.28
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 21/134 (15%)
Query: 67 VLITTKNSNILEDLETLRLFSRVIPE----YCRALEENEISEHCFDLIFAFDEIVALGYR 122
++ + +SN+ + LET R S + E Y L+ + + D +F E + R
Sbjct: 835 IIRSEASSNLKKLLETERKVSASVAEVQEQYTERLQASISAFRALDELF---EAIEQKQR 891
Query: 123 ENVN--------LAQIRTFTEMDSHEEKVFRAVRETQERE---AKAEMRRKAKELQQARR 171
E + L+ TF+ M + + RA++E ++R+ AKAE R++ ++ARR
Sbjct: 892 ELADYLCEDAQQLSLEDTFSTMKAFRDLFLRALKENKDRKEQAAKAERRKQQLAEEEARR 951
Query: 172 DAERQGK---KAPG 182
GK K PG
Sbjct: 952 PRGEDGKPVRKGPG 965
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 34.3 bits (77), Expect = 0.28
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 21/134 (15%)
Query: 67 VLITTKNSNILEDLETLRLFSRVIPE----YCRALEENEISEHCFDLIFAFDEIVALGYR 122
++ + +SN+ + LET R S + E Y L+ + + D +F E + R
Sbjct: 835 IIRSEASSNLKKLLETERKVSASVAEVQEQYTERLQASISAFRALDELF---EAIEQKQR 891
Query: 123 ENVN--------LAQIRTFTEMDSHEEKVFRAVRETQERE---AKAEMRRKAKELQQARR 171
E + L+ TF+ M + + RA++E ++R+ AKAE R++ ++ARR
Sbjct: 892 ELADYLCEDAQQLSLEDTFSTMKAFRDLFLRALKENKDRKEQAAKAERRKQQLAEEEARR 951
Query: 172 DAERQGK---KAPG 182
GK K PG
Sbjct: 952 PRGEDGKPVRKGPG 965
>gi|189409104 adaptor-related protein complex 4, sigma 1 subunit
isoform 2 [Homo sapiens]
Length = 144
Score = 34.3 bits (77), Expect = 0.28
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98
L + +Q +F+E + + +Y+ L++V+ N + E + F V+ EY +
Sbjct: 40 LSRSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVS 99
Query: 99 ENEISEHCFDLIFAFDEIVALGYRENVNLAQI 130
E +I + + DE+V G N A+I
Sbjct: 100 ELDIMFNLDKVHIILDEMVLNGCIVETNRARI 131
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.36
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180
++R TE +E++ + +E +ERE + E R+ +E ++ R + ER+ ++A
Sbjct: 233 KLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERA 284
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.36
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 129 QIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180
++R TE +E++ + +E +ERE + E R+ +E ++ R + ER+ ++A
Sbjct: 233 KLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERA 284
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 32.7 bits (73), Expect = 0.81
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 153 REAKAEMRRKAKELQQARRDAERQG-KKAPGFGGFGSSAVSGGSTAAMITETIIETDKPK 211
R+++ E+R++ + L++ARR G ++ PG GG + + G + + +
Sbjct: 79 RKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEASGHR---------QDTEER 129
Query: 212 VAPAPAR-PSGPSKALKLGAKGK 233
PAP+R PS P K K K
Sbjct: 130 ARPAPSRDPSPPRKPRPSRVKAK 152
>gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [Homo
sapiens]
Length = 157
Score = 32.3 bits (72), Expect = 1.1
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLET 82
++TR ++ +LA PK+ + F+E ++ VY+ LY N L LE
Sbjct: 29 KITRELVQTVLARKPKMCS------FLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEI 82
Query: 83 LRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEK 142
+ + ++ +Y ++ E +I + F DE + G ++ ++
Sbjct: 83 IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG-------------EVQETSKKN 129
Query: 143 VFRAVRETQEREAKAEMRRKAKE 165
V +A+ + + +AE R E
Sbjct: 130 VLKAIEQADLLQEEAETPRSVLE 152
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,915,996
Number of Sequences: 37866
Number of extensions: 807131
Number of successful extensions: 4069
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 3851
Number of HSP's gapped (non-prelim): 307
length of query: 511
length of database: 18,247,518
effective HSP length: 107
effective length of query: 404
effective length of database: 14,195,856
effective search space: 5735125824
effective search space used: 5735125824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.