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Search of human proteins with 239754401
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754401 PREDICTED: similar to transducin (beta)-like 1
X-linked receptor 1 [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754401 PREDICTED: similar to transducin (beta)-like 1 X-li... 263 4e-71
gi|239748962 PREDICTED: hypothetical protein XP_002346868 [Homo ... 223 4e-59
gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo ... 209 5e-55
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 163 3e-41
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 151 2e-37
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 151 2e-37
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 151 2e-37
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 151 2e-37
gi|19913367 transducin beta-like 1Y [Homo sapiens] 140 4e-34
gi|19913365 transducin beta-like 1Y [Homo sapiens] 140 4e-34
gi|15150805 transducin beta-like 1Y [Homo sapiens] 140 4e-34
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 39 0.002
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 39 0.002
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens] 33 0.085
gi|157785548 PAS domain containing 1 [Homo sapiens] 32 0.19
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 31 0.25
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 31 0.32
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 31 0.32
gi|21359918 zinc finger, AN1-type domain 6 [Homo sapiens] 30 0.42
gi|27477111 step II splicing factor SLU7 [Homo sapiens] 30 0.42
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 0.42
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens] 30 0.55
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 30 0.72
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 30 0.72
gi|42718020 retinitis pigmentosa 9 [Homo sapiens] 30 0.72
gi|119943102 CREB binding protein isoform b [Homo sapiens] 29 0.94
gi|119943104 CREB binding protein isoform a [Homo sapiens] 29 0.94
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 29 0.94
>gi|239754401 PREDICTED: similar to transducin (beta)-like 1
X-linked receptor 1 [Homo sapiens]
Length = 132
Score = 263 bits (671), Expect = 4e-71
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60
MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF
Sbjct: 1 MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60
Query: 61 DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS
Sbjct: 61 DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
Query: 121 KWGGEWSTYYSK 132
KWGGEWSTYYSK
Sbjct: 121 KWGGEWSTYYSK 132
>gi|239748962 PREDICTED: hypothetical protein XP_002346868 [Homo
sapiens]
Length = 155
Score = 223 bits (567), Expect = 4e-59
Identities = 117/125 (93%), Positives = 120/125 (96%)
Query: 1 MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60
MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF
Sbjct: 1 MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60
Query: 61 DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK +++
Sbjct: 61 DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 120
Query: 121 KWGGE 125
G E
Sbjct: 121 ANGEE 125
>gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo
sapiens]
Length = 177
Score = 209 bits (532), Expect = 5e-55
Identities = 110/118 (93%), Positives = 113/118 (95%)
Query: 8 ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 67
ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL
Sbjct: 30 ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 89
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGE 125
SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK +++ G E
Sbjct: 90 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEE 147
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 163 bits (413), Expect = 3e-41
Identities = 90/104 (86%), Positives = 93/104 (89%), Gaps = 6/104 (5%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGT FDGRP+ SL
Sbjct: 22 SHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESL 81
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQ-----AAAATANQQGSAK 106
SLIDA+MPDVVQTRQQAY DKL QQQ AAAA A+QQGSAK
Sbjct: 82 SLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAK 125
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 151 bits (381), Expect = 2e-37
Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 22 SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 81
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A +A
Sbjct: 82 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 119
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 151 bits (381), Expect = 2e-37
Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 22 SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 81
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A +A
Sbjct: 82 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 119
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 151 bits (381), Expect = 2e-37
Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 73 SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 132
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A +A
Sbjct: 133 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 170
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 151 bits (381), Expect = 2e-37
Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 73 SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 132
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A +A
Sbjct: 133 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 170
>gi|19913367 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 140 bits (352), Expect = 4e-34
Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22 SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAK 106
SLI A++PDVVQ RQQA+ +KL QQQA+AA AK
Sbjct: 82 SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAK 120
>gi|19913365 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 140 bits (352), Expect = 4e-34
Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22 SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAK 106
SLI A++PDVVQ RQQA+ +KL QQQA+AA AK
Sbjct: 82 SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAK 120
>gi|15150805 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 140 bits (352), Expect = 4e-34
Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Query: 9 SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22 SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81
Query: 68 SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAK 106
SLI A++PDVVQ RQQA+ +KL QQQA+AA AK
Sbjct: 82 SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAK 120
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 38.5 bits (88), Expect = 0.002
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 75 PDVVQTRQQAYS-DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
P V +R + S + + ++A++A Q S KKKKKK+KKK +KH K
Sbjct: 1662 PSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKK 1709
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 38.5 bits (88), Expect = 0.002
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 75 PDVVQTRQQAYS-DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
P V +R + S + + ++A++A Q S KKKKKK+KKK +KH K
Sbjct: 1696 PSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKK 1743
>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
Length = 822
Score = 32.7 bits (73), Expect = 0.085
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 46 YVEAEVSINEDGTFFDGRPMSLSLIDALMPDVVQTRQQA-----------------YSDK 88
Y EA V+I D +G + +L D + ++ R +SDK
Sbjct: 274 YREALVTIKNDLKLIEGVDIKENLQDQIRHWFIECRNLTGTFPDYPDVEEGGSAIIFSDK 333
Query: 89 LKQQQAAAATANQQGSAKKKKKKKKKK 115
QQ ANQ+ K KKKKKKK+
Sbjct: 334 TIQQVIEDIIANQEEEEKNKKKKKKKE 360
>gi|157785548 PAS domain containing 1 [Homo sapiens]
Length = 773
Score = 31.6 bits (70), Expect = 0.19
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 73 LMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK----KKKKKKKCRKHSKWGGE 125
L + Q R+Q K K+ Q Q+ KKK +++KKKK ++ KW G+
Sbjct: 496 LREQLQQLREQRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQ 552
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 31.2 bits (69), Expect = 0.25
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 55 EDGTFFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKK 114
EDG DG ID + +Q ++ ++K K ++A + + ++KKK K++
Sbjct: 12 EDGELEDGE------IDDAGFEEIQEKEAKENEKQKSEKAYRKSRKKHKKEREKKKSKRR 65
Query: 115 KCRKH 119
K KH
Sbjct: 66 KREKH 70
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 30.8 bits (68), Expect = 0.32
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 79 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
+ +++ +K K+++ ++ KKKKKKKKKK RK +
Sbjct: 103 EEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKR 145
Score = 29.6 bits (65), Expect = 0.72
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 59 FFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
F D P SL L +P + +++ K K+++ ++ KKKKKKKKKK ++
Sbjct: 85 FCDAGP-SLHLPLHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKR 143
Query: 119 HSK 121
K
Sbjct: 144 KRK 146
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 88 KLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
K K+++ ++ KKKKKKKKK+ RK +
Sbjct: 114 KKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKR 147
Score = 27.3 bits (59), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 88 KLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGE 125
K K+++ ++ K+K+K+KKK+ +K K G E
Sbjct: 128 KKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKTGNE 165
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 88 KLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
K K+++ ++ KKKKKKK+K+ RK +
Sbjct: 116 KKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKR 149
Score = 26.2 bits (56), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 81 RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
+++ K K+++ ++ KKKKKKKK+K ++ K
Sbjct: 108 KEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRK 148
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 30.8 bits (68), Expect = 0.32
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 86 SDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
SD Q+++ +++ + + ++K KK+KKK RK+S+
Sbjct: 204 SDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSR 239
Score = 28.5 bits (62), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 86 SDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
SD ++ + + + +KK+KKK +K RKH K
Sbjct: 208 SDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKK 243
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 30.8 bits (68), Expect = 0.32
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 75 PDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGEWSTYYSK 132
P V + R + K K +++++ ++ + AK+KK K K + + WG T S+
Sbjct: 1034 PSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRTSRSR 1091
Score = 27.3 bits (59), Expect = 3.6
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 55 EDG----TFFDGRPMSLSLIDALMPDVVQTRQ--QAYSDKLKQQQAAAATANQQGSAKKK 108
EDG TFF +++ + + P+ + QA + ++ + + + + + S +K
Sbjct: 943 EDGASCSTFFGSEERTVTCVTVVEPEAPPSPDVLQAATHRVVELRPPSRSRSTSSSRSRK 1002
Query: 109 KKKKKKKCRKHSK 121
K K+K+ R+H +
Sbjct: 1003 KAKRKRVSREHGR 1015
>gi|21359918 zinc finger, AN1-type domain 6 [Homo sapiens]
Length = 208
Score = 30.4 bits (67), Expect = 0.42
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 23 QSNINGALVPPAALISIIQKGLQYVEAEVSINE-----DGTFFDGRPMSLSLIDALMPDV 77
Q++ NG + PPA +S + + L + S+ E D T +P +S L V
Sbjct: 41 QNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESV 100
Query: 78 VQTRQQAYS-----DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKH 119
++ + S + + QA+ + QQ S ++ K +K K +K+
Sbjct: 101 ASSQLDSTSVDKAVPETEDVQASVSDTAQQPSEEQSKSLEKPKQKKN 147
>gi|27477111 step II splicing factor SLU7 [Homo sapiens]
Length = 586
Score = 30.4 bits (67), Expect = 0.42
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 13/42 (30%)
Query: 79 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
QT + + +KLK++ KKKKKKKKKK RK S
Sbjct: 484 QTLMELHQEKLKEE-------------KKKKKKKKKKHRKSS 512
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 102 QGSAKKKKKKKKKKCRKHSK 121
Q K++KKKKKKK +KH K
Sbjct: 491 QEKLKEEKKKKKKKKKKHRK 510
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.4 bits (67), Expect = 0.42
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 99 ANQQGSAKKKKKKKKKKCRKHSK 121
++Q+G KKKKKKK KK +K K
Sbjct: 802 SDQEGGGKKKKKKKDKKHKKDKK 824
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 30.0 bits (66), Expect = 0.55
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 80 TRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
T ++ +K K+++ ++ KKKKKKKKKK +K
Sbjct: 72 TTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKK 110
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 87 DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
+K K+++ ++ K+KKKKKKKK +K K
Sbjct: 77 EKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 87 DKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
+K K+++ ++ KKKKKKKKKK +K
Sbjct: 81 EKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKK 112
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 79 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
+T +K K+++ ++ K+K+KKKKKK +K K
Sbjct: 67 KTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKK 109
Score = 27.3 bits (59), Expect = 3.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 79 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK 115
+ ++ +K K+++ ++ KKKKKKKKKK
Sbjct: 75 EKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111
Score = 26.9 bits (58), Expect = 4.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 80 TRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
T+++ + ++++ ++ KKKKKKKKKK +K
Sbjct: 73 TKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111
>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
Length = 241
Score = 30.0 bits (66), Expect = 0.55
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 72 ALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
+L+PD + +++A S + ++ T N KK+KKKKK + RK S
Sbjct: 156 SLIPDEEEEKEEAKSAEFEKPDP---TRNPSRKRKKEKKKKKHRDRKSS 201
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 86 SDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
SD A ++ A KKKKKKKK +KH +
Sbjct: 206 SDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHKE 241
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 29.6 bits (65), Expect = 0.72
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 61 DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQ-----QQAAAATANQQGSAKKKKK-KKKK 114
D S S D+ D + R Q ++ +Q +Q AA + QQ KKK+K KK+K
Sbjct: 487 DSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDKKEK 546
Query: 115 KCRKHSK 121
K KH +
Sbjct: 547 KKEKHKR 553
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 29.6 bits (65), Expect = 0.72
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 61 DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQ-----QQAAAATANQQGSAKKKKK-KKKK 114
D S S D+ D + R Q ++ +Q +Q AA + QQ KKK+K KK+K
Sbjct: 487 DSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDKKEK 546
Query: 115 KCRKHSK 121
K KH +
Sbjct: 547 KKEKHKR 553
>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 0.72
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 78 VQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
+Q +Q D + +++++++ G K KKKKKK+K +K K
Sbjct: 157 IQQLKQLLEDSTSDEDRSSSSSSE-GKEKHKKKKKKEKHKKRKK 199
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 63 RPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKH 119
+ + + + L+ D ++ S + ++ ++ K+KK+KKKKK RKH
Sbjct: 153 KDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKH 209
Score = 27.3 bits (59), Expect = 3.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 79 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
+ R + S + K++ + KK+KKKKKK+ K SK
Sbjct: 171 EDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSK 213
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 29.3 bits (64), Expect = 0.94
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 73 LMPDVVQTRQQAYSDKLKQQQAAAA--TANQQGSAKKKKKKKKKKCRKH 119
++ + ++ +Q ++ K++ AA+ T QG +K KKK KK K+
Sbjct: 1510 VLEESIKELEQEEEERKKEESTAASETTEGSQGDSKNAKKKNNKKTNKN 1558
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 29.3 bits (64), Expect = 0.94
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 73 LMPDVVQTRQQAYSDKLKQQQAAAA--TANQQGSAKKKKKKKKKKCRKH 119
++ + ++ +Q ++ K++ AA+ T QG +K KKK KK K+
Sbjct: 1548 VLEESIKELEQEEEERKKEESTAASETTEGSQGDSKNAKKKNNKKTNKN 1596
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 29.3 bits (64), Expect = 0.94
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 79 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKH 119
Q + +A KL Q + A ++ Q +KK+KKK+K KH
Sbjct: 7 QKKLEAGKAKLAQFRQRKAQSDGQSPSKKQKKKRKTSSSKH 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.124 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,613,309
Number of Sequences: 37866
Number of extensions: 165534
Number of successful extensions: 2081
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 466
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.