Guide to the Human Genome
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Search of human proteins with 239754401

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754401 PREDICTED: similar to transducin (beta)-like 1
X-linked receptor 1 [Homo sapiens]
         (132 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754401 PREDICTED: similar to transducin (beta)-like 1 X-li...   263   4e-71
gi|239748962 PREDICTED: hypothetical protein XP_002346868 [Homo ...   223   4e-59
gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo ...   209   5e-55
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s...   163   3e-41
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]         151   2e-37
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]         151   2e-37
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]         151   2e-37
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]           151   2e-37
gi|19913367 transducin beta-like 1Y [Homo sapiens]                    140   4e-34
gi|19913365 transducin beta-like 1Y [Homo sapiens]                    140   4e-34
gi|15150805 transducin beta-like 1Y [Homo sapiens]                    140   4e-34
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    39   0.002
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    39   0.002
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]       33   0.085
gi|157785548 PAS domain containing 1 [Homo sapiens]                    32   0.19 
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap...    31   0.25 
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]            31   0.32 
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  31   0.32 
gi|221139764 PHD and ring finger domains 1 [Homo sapiens]              31   0.32 
gi|21359918 zinc finger, AN1-type domain 6 [Homo sapiens]              30   0.42 
gi|27477111 step II splicing factor SLU7 [Homo sapiens]                30   0.42 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         30   0.42 
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]            30   0.55 
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]      30   0.55 
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ...    30   0.72 
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    30   0.72 
gi|42718020 retinitis pigmentosa 9 [Homo sapiens]                      30   0.72 
gi|119943102 CREB binding protein isoform b [Homo sapiens]             29   0.94 
gi|119943104 CREB binding protein isoform a [Homo sapiens]             29   0.94 
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         29   0.94 

>gi|239754401 PREDICTED: similar to transducin (beta)-like 1
           X-linked receptor 1 [Homo sapiens]
          Length = 132

 Score =  263 bits (671), Expect = 4e-71
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60
           MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF
Sbjct: 1   MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60

Query: 61  DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
           DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS
Sbjct: 61  DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120

Query: 121 KWGGEWSTYYSK 132
           KWGGEWSTYYSK
Sbjct: 121 KWGGEWSTYYSK 132


>gi|239748962 PREDICTED: hypothetical protein XP_002346868 [Homo
           sapiens]
          Length = 155

 Score =  223 bits (567), Expect = 4e-59
 Identities = 117/125 (93%), Positives = 120/125 (96%)

Query: 1   MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60
           MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF
Sbjct: 1   MDAFQKSASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFF 60

Query: 61  DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
           DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK  +++
Sbjct: 61  DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 120

Query: 121 KWGGE 125
             G E
Sbjct: 121 ANGEE 125


>gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo
           sapiens]
          Length = 177

 Score =  209 bits (532), Expect = 5e-55
 Identities = 110/118 (93%), Positives = 113/118 (95%)

Query: 8   ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 67
           ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL
Sbjct: 30  ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 89

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGE 125
           SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK  +++  G E
Sbjct: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEE 147


>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
           sapiens]
          Length = 514

 Score =  163 bits (413), Expect = 3e-41
 Identities = 90/104 (86%), Positives = 93/104 (89%), Gaps = 6/104 (5%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGT FDGRP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESL 81

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQ-----AAAATANQQGSAK 106
           SLIDA+MPDVVQTRQQAY DKL QQQ     AAAA A+QQGSAK
Sbjct: 82  SLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAK 125


>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
          Length = 526

 Score =  151 bits (381), Expect = 2e-37
 Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 81

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A
Sbjct: 82  SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 119


>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
          Length = 526

 Score =  151 bits (381), Expect = 2e-37
 Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 81

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A
Sbjct: 82  SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 119


>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
          Length = 577

 Score =  151 bits (381), Expect = 2e-37
 Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 73  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 132

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A
Sbjct: 133 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 170


>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
          Length = 577

 Score =  151 bits (381), Expect = 2e-37
 Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 73  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 132

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSA 105
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A
Sbjct: 133 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATA 170


>gi|19913367 transducin beta-like 1Y [Homo sapiens]
          Length = 522

 Score =  140 bits (352), Expect = 4e-34
 Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAK 106
           SLI A++PDVVQ RQQA+ +KL QQQA+AA       AK
Sbjct: 82  SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAK 120


>gi|19913365 transducin beta-like 1Y [Homo sapiens]
          Length = 522

 Score =  140 bits (352), Expect = 4e-34
 Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAK 106
           SLI A++PDVVQ RQQA+ +KL QQQA+AA       AK
Sbjct: 82  SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAK 120


>gi|15150805 transducin beta-like 1Y [Homo sapiens]
          Length = 522

 Score =  140 bits (352), Expect = 4e-34
 Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 9   SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 67
           SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81

Query: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAK 106
           SLI A++PDVVQ RQQA+ +KL QQQA+AA       AK
Sbjct: 82  SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAK 120


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 75   PDVVQTRQQAYS-DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
            P V  +R  + S  + +   ++A++A  Q S KKKKKK+KKK +KH K
Sbjct: 1662 PSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKK 1709


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 75   PDVVQTRQQAYS-DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
            P V  +R  + S  + +   ++A++A  Q S KKKKKK+KKK +KH K
Sbjct: 1696 PSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKK 1743


>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
          Length = 822

 Score = 32.7 bits (73), Expect = 0.085
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 17/87 (19%)

Query: 46  YVEAEVSINEDGTFFDGRPMSLSLIDALMPDVVQTRQQA-----------------YSDK 88
           Y EA V+I  D    +G  +  +L D +    ++ R                    +SDK
Sbjct: 274 YREALVTIKNDLKLIEGVDIKENLQDQIRHWFIECRNLTGTFPDYPDVEEGGSAIIFSDK 333

Query: 89  LKQQQAAAATANQQGSAKKKKKKKKKK 115
             QQ      ANQ+   K KKKKKKK+
Sbjct: 334 TIQQVIEDIIANQEEEEKNKKKKKKKE 360


>gi|157785548 PAS domain containing 1 [Homo sapiens]
          Length = 773

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 73  LMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK----KKKKKKKCRKHSKWGGE 125
           L   + Q R+Q    K K+ Q       Q+   KKK    +++KKKK ++  KW G+
Sbjct: 496 LREQLQQLREQRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQ 552


>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
           sapiens]
          Length = 1189

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 55  EDGTFFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKK 114
           EDG   DG       ID    + +Q ++   ++K K ++A   +  +    ++KKK K++
Sbjct: 12  EDGELEDGE------IDDAGFEEIQEKEAKENEKQKSEKAYRKSRKKHKKEREKKKSKRR 65

Query: 115 KCRKH 119
           K  KH
Sbjct: 66  KREKH 70


>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 30.8 bits (68), Expect = 0.32
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 79  QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           + +++   +K K+++       ++   KKKKKKKKKK RK  +
Sbjct: 103 EEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKR 145



 Score = 29.6 bits (65), Expect = 0.72
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 59  FFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
           F D  P SL L    +P   + +++    K K+++       ++   KKKKKKKKKK ++
Sbjct: 85  FCDAGP-SLHLPLHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKR 143

Query: 119 HSK 121
             K
Sbjct: 144 KRK 146



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 88  KLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           K K+++       ++   KKKKKKKKK+ RK  +
Sbjct: 114 KKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKR 147



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 88  KLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGE 125
           K K+++       ++   K+K+K+KKK+ +K  K G E
Sbjct: 128 KKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKTGNE 165



 Score = 26.6 bits (57), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 88  KLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           K K+++       ++   KKKKKKK+K+ RK  +
Sbjct: 116 KKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKR 149



 Score = 26.2 bits (56), Expect = 8.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 81  RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           +++    K K+++       ++   KKKKKKKK+K ++  K
Sbjct: 108 KEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRK 148


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 30.8 bits (68), Expect = 0.32
 Identities = 12/36 (33%), Positives = 25/36 (69%)

Query: 86  SDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           SD     Q+++ +++ + + ++K KK+KKK RK+S+
Sbjct: 204 SDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSR 239



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 86  SDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           SD      ++ + +  +  +KK+KKK +K  RKH K
Sbjct: 208 SDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKK 243


>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
          Length = 1648

 Score = 30.8 bits (68), Expect = 0.32
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 75   PDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGEWSTYYSK 132
            P V + R +    K K +++++  ++ +  AK+KK K K +  +   WG    T  S+
Sbjct: 1034 PSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRTSRSR 1091



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 55   EDG----TFFDGRPMSLSLIDALMPDVVQTRQ--QAYSDKLKQQQAAAATANQQGSAKKK 108
            EDG    TFF     +++ +  + P+   +    QA + ++ + +  + + +   S  +K
Sbjct: 943  EDGASCSTFFGSEERTVTCVTVVEPEAPPSPDVLQAATHRVVELRPPSRSRSTSSSRSRK 1002

Query: 109  KKKKKKKCRKHSK 121
            K K+K+  R+H +
Sbjct: 1003 KAKRKRVSREHGR 1015


>gi|21359918 zinc finger, AN1-type domain 6 [Homo sapiens]
          Length = 208

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 23  QSNINGALVPPAALISIIQKGLQYVEAEVSINE-----DGTFFDGRPMSLSLIDALMPDV 77
           Q++ NG + PPA  +S + + L     + S+ E     D T    +P  +S    L   V
Sbjct: 41  QNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESV 100

Query: 78  VQTRQQAYS-----DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKH 119
             ++  + S      + +  QA+ +   QQ S ++ K  +K K +K+
Sbjct: 101 ASSQLDSTSVDKAVPETEDVQASVSDTAQQPSEEQSKSLEKPKQKKN 147


>gi|27477111 step II splicing factor SLU7 [Homo sapiens]
          Length = 586

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 13/42 (30%)

Query: 79  QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
           QT  + + +KLK++             KKKKKKKKKK RK S
Sbjct: 484 QTLMELHQEKLKEE-------------KKKKKKKKKKHRKSS 512



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 102 QGSAKKKKKKKKKKCRKHSK 121
           Q   K++KKKKKKK +KH K
Sbjct: 491 QEKLKEEKKKKKKKKKKHRK 510


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 99  ANQQGSAKKKKKKKKKKCRKHSK 121
           ++Q+G  KKKKKKK KK +K  K
Sbjct: 802 SDQEGGGKKKKKKKDKKHKKDKK 824


>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 248

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 80  TRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
           T ++   +K K+++       ++   KKKKKKKKKK +K
Sbjct: 72  TTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKK 110



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 87  DKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           +K K+++       ++   K+KKKKKKKK +K  K
Sbjct: 77  EKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 87  DKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
           +K K+++       ++   KKKKKKKKKK +K
Sbjct: 81  EKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKK 112



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 79  QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           +T      +K K+++       ++   K+K+KKKKKK +K  K
Sbjct: 67  KTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKK 109



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 79  QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK 115
           +  ++   +K K+++       ++   KKKKKKKKKK
Sbjct: 75  EKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111



 Score = 26.9 bits (58), Expect = 4.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 80  TRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRK 118
           T+++    + ++++       ++   KKKKKKKKKK +K
Sbjct: 73  TKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111


>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
          Length = 241

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 72  ALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHS 120
           +L+PD  + +++A S + ++      T N     KK+KKKKK + RK S
Sbjct: 156 SLIPDEEEEKEEAKSAEFEKPDP---TRNPSRKRKKEKKKKKHRDRKSS 201



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 86  SDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           SD        A   ++   A KKKKKKKK  +KH +
Sbjct: 206 SDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHKE 241


>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
           sapiens]
          Length = 722

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 61  DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQ-----QQAAAATANQQGSAKKKKK-KKKK 114
           D    S S  D+   D  + R Q  ++  +Q     +Q AA +  QQ   KKK+K KK+K
Sbjct: 487 DSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDKKEK 546

Query: 115 KCRKHSK 121
           K  KH +
Sbjct: 547 KKEKHKR 553


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
           sapiens]
          Length = 1362

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 61  DGRPMSLSLIDALMPDVVQTRQQAYSDKLKQ-----QQAAAATANQQGSAKKKKK-KKKK 114
           D    S S  D+   D  + R Q  ++  +Q     +Q AA +  QQ   KKK+K KK+K
Sbjct: 487 DSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDKKEK 546

Query: 115 KCRKHSK 121
           K  KH +
Sbjct: 547 KKEKHKR 553


>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
          Length = 221

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 78  VQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           +Q  +Q   D    +  +++++++ G  K KKKKKK+K +K  K
Sbjct: 157 IQQLKQLLEDSTSDEDRSSSSSSE-GKEKHKKKKKKEKHKKRKK 199



 Score = 28.9 bits (63), Expect = 1.2
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 63  RPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKH 119
           + + +  +  L+ D      ++ S   + ++       ++   K+KK+KKKKK RKH
Sbjct: 153 KDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKH 209



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 79  QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSK 121
           + R  + S + K++        +    KK+KKKKKK+  K SK
Sbjct: 171 EDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSK 213


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 29.3 bits (64), Expect = 0.94
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 73   LMPDVVQTRQQAYSDKLKQQQAAAA--TANQQGSAKKKKKKKKKKCRKH 119
            ++ + ++  +Q   ++ K++  AA+  T   QG +K  KKK  KK  K+
Sbjct: 1510 VLEESIKELEQEEEERKKEESTAASETTEGSQGDSKNAKKKNNKKTNKN 1558


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 29.3 bits (64), Expect = 0.94
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 73   LMPDVVQTRQQAYSDKLKQQQAAAA--TANQQGSAKKKKKKKKKKCRKH 119
            ++ + ++  +Q   ++ K++  AA+  T   QG +K  KKK  KK  K+
Sbjct: 1548 VLEESIKELEQEEEERKKEESTAASETTEGSQGDSKNAKKKNNKKTNKN 1596


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 29.3 bits (64), Expect = 0.94
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 79  QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKH 119
           Q + +A   KL Q +   A ++ Q  +KK+KKK+K    KH
Sbjct: 7   QKKLEAGKAKLAQFRQRKAQSDGQSPSKKQKKKRKTSSSKH 47


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.124    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,613,309
Number of Sequences: 37866
Number of extensions: 165534
Number of successful extensions: 2081
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 466
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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