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Search of human proteins with 239754373
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754373 PREDICTED: hypothetical protein XP_002345967 [Homo
sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754373 PREDICTED: hypothetical protein XP_002345967 [Homo ... 308 1e-84
gi|239748921 PREDICTED: hypothetical protein XP_002346857 [Homo ... 241 2e-64
gi|239742943 PREDICTED: hypothetical protein XP_002342700 [Homo ... 241 2e-64
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 36 0.013
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 34 0.038
gi|194272172 double homeobox, 4 [Homo sapiens] 34 0.038
gi|194272217 double homeobox, 4-like [Homo sapiens] 34 0.038
gi|194272216 double homeobox, 4-like [Homo sapiens] 34 0.038
gi|194272215 double homeobox, 4-like [Homo sapiens] 34 0.038
gi|194272192 double homeobox, 4-like [Homo sapiens] 34 0.038
gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens] 33 0.064
gi|65293358 MARVEL domain containing 3 isoform 2 [Homo sapiens] 33 0.064
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 33 0.084
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.19
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 32 0.25
gi|84570137 homeobox B3 [Homo sapiens] 32 0.25
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 31 0.32
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 31 0.32
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 31 0.32
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 31 0.32
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 31 0.32
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 31 0.32
gi|91208420 bassoon protein [Homo sapiens] 31 0.32
gi|23199971 T-cell activation Rho GTPase-activating protein isof... 31 0.32
gi|21314774 T-cell activation Rho GTPase-activating protein isof... 31 0.32
gi|239751337 PREDICTED: hypothetical protein [Homo sapiens] 31 0.42
gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens] 31 0.42
>gi|239754373 PREDICTED: hypothetical protein XP_002345967 [Homo
sapiens]
Length = 145
Score = 308 bits (789), Expect = 1e-84
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MEIKSGEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPF 60
MEIKSGEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPF
Sbjct: 1 MEIKSGEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPF 60
Query: 61 PKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADL 120
PKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADL
Sbjct: 61 PKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADL 120
Query: 121 VLSCYGYRLLTMLIRKTFIWFKDFC 145
VLSCYGYRLLTMLIRKTFIWFKDFC
Sbjct: 121 VLSCYGYRLLTMLIRKTFIWFKDFC 145
>gi|239748921 PREDICTED: hypothetical protein XP_002346857 [Homo
sapiens]
Length = 186
Score = 241 bits (614), Expect = 2e-64
Identities = 116/137 (84%), Positives = 118/137 (86%), Gaps = 1/137 (0%)
Query: 9 RGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 68
RG P D + G+ RVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR
Sbjct: 51 RGTSPGCSRPPRAADSPGALPLCGT-RVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 109
Query: 69 NSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCYGYR 128
NSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCYGYR
Sbjct: 110 NSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCYGYR 169
Query: 129 LLTMLIRKTFIWFKDFC 145
LLTMLIRKTFIWFKDFC
Sbjct: 170 LLTMLIRKTFIWFKDFC 186
>gi|239742943 PREDICTED: hypothetical protein XP_002342700 [Homo
sapiens]
Length = 186
Score = 241 bits (614), Expect = 2e-64
Identities = 116/137 (84%), Positives = 118/137 (86%), Gaps = 1/137 (0%)
Query: 9 RGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 68
RG P D + G+ RVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR
Sbjct: 51 RGTSPGCSRPPRAADSPGALPLCGT-RVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 109
Query: 69 NSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCYGYR 128
NSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCYGYR
Sbjct: 110 NSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCYGYR 169
Query: 129 LLTMLIRKTFIWFKDFC 145
LLTMLIRKTFIWFKDFC
Sbjct: 170 LLTMLIRKTFIWFKDFC 186
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 35.8 bits (81), Expect = 0.013
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 6 GEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRG 64
G A P P+ +TGD S +GS+R+P G + R ++ P P P RG
Sbjct: 709 GRPLSASQPSLPQRATGDGSPGRKGSGSERLPPSGLLAKPPRTAQPPRPPVPEPATPRG 767
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.4 bits (80), Expect = 0.017
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 6 GEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGS 65
G+ A P GPR + PS R G +R G +GW PA PP P G+
Sbjct: 186 GQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSG-------SGWTPARPPSPPAGA 238
Query: 66 ----RHRNSQTPEPAGLPL 80
R S T PA L L
Sbjct: 239 PEALRPPASTTRAPAPLTL 257
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.4 bits (80), Expect = 0.017
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 6 GEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGS 65
G+ A P GPR + PS R G +R G +GW PA PP P G+
Sbjct: 186 GQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSG-------SGWTPARPPSPPAGA 238
Query: 66 ----RHRNSQTPEPAGLPL 80
R S T PA L L
Sbjct: 239 PEALRPPASTTRAPAPLTL 257
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.4 bits (80), Expect = 0.017
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 6 GEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGS 65
G+ A P GPR + PS R G +R G +GW PA PP P G+
Sbjct: 186 GQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSG-------SGWTPARPPSPPAGA 238
Query: 66 ----RHRNSQTPEPAGLPL 80
R S T PA L L
Sbjct: 239 PEALRPPASTTRAPAPLTL 257
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.3 bits (77), Expect = 0.038
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 WGRSARVSETGWEP----APPPFPKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEV--C 95
WGR +V+ WEP APPP P +++ + G+P P ++ A W C
Sbjct: 373 WGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPA-PWSALPC 431
Query: 96 QTKLFRLLA 104
L LLA
Sbjct: 432 GLLLDELLA 440
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 34.3 bits (77), Expect = 0.038
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 WGRSARVSETGWEP----APPPFPKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEV--C 95
WGR +V+ WEP APPP P +++ + G+P P ++ A W C
Sbjct: 373 WGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPA-PWSALPC 431
Query: 96 QTKLFRLLA 104
L LLA
Sbjct: 432 GLLLDELLA 440
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.3 bits (77), Expect = 0.038
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 WGRSARVSETGWEP----APPPFPKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEV--C 95
WGR +V+ WEP APPP P +++ + G+P P ++ A W C
Sbjct: 373 WGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPA-PWSALPC 431
Query: 96 QTKLFRLLA 104
L LLA
Sbjct: 432 GLLLDELLA 440
>gi|194272216 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.3 bits (77), Expect = 0.038
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 WGRSARVSETGWEP----APPPFPKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEV--C 95
WGR +V+ WEP APPP P +++ + G+P P ++ A W C
Sbjct: 373 WGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPA-PWSALPC 431
Query: 96 QTKLFRLLA 104
L LLA
Sbjct: 432 GLLLDELLA 440
>gi|194272215 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.3 bits (77), Expect = 0.038
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 WGRSARVSETGWEP----APPPFPKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEV--C 95
WGR +V+ WEP APPP P +++ + G+P P ++ A W C
Sbjct: 373 WGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPA-PWSALPC 431
Query: 96 QTKLFRLLA 104
L LLA
Sbjct: 432 GLLLDELLA 440
>gi|194272192 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.3 bits (77), Expect = 0.038
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 WGRSARVSETGWEP----APPPFPKRGSRHRNSQTPEPAGLPLPLHPIRASAGNWEV--C 95
WGR +V+ WEP APPP P +++ + G+P P ++ A W C
Sbjct: 373 WGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPA-PWSALPC 431
Query: 96 QTKLFRLLA 104
L LLA
Sbjct: 432 GLLLDELLA 440
>gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens]
Length = 410
Score = 33.5 bits (75), Expect = 0.064
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 8 KRGAEPPMGPRTSTG-DPSARVTKNGSQRVPADGR---------WGRSARVSETGWEPAP 57
+R +P GPR T D R ++G P R W +A WE
Sbjct: 80 ERERDPDRGPRRDTHRDAGPRAGEHGVWEKPRQSRTRDGARGLTWDAAAPPGPAPWEAPE 139
Query: 58 PPFPKR----GSRHRNSQTPEPAGLPLPLHPIR 86
PP P+R G R S+ P LP P R
Sbjct: 140 PPQPQRKGDPGRRRPESEPPSERYLPSTPRPGR 172
>gi|65293358 MARVEL domain containing 3 isoform 2 [Homo sapiens]
Length = 401
Score = 33.5 bits (75), Expect = 0.064
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 8 KRGAEPPMGPRTSTG-DPSARVTKNGSQRVPADGR---------WGRSARVSETGWEPAP 57
+R +P GPR T D R ++G P R W +A WE
Sbjct: 80 ERERDPDRGPRRDTHRDAGPRAGEHGVWEKPRQSRTRDGARGLTWDAAAPPGPAPWEAPE 139
Query: 58 PPFPKR----GSRHRNSQTPEPAGLPLPLHPIR 86
PP P+R G R S+ P LP P R
Sbjct: 140 PPQPQRKGDPGRRRPESEPPSERYLPSTPRPGR 172
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 33.1 bits (74), Expect = 0.084
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 1 MEIKSGEKRGAEPPMG-----PRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGW-- 53
+++ RGAE M P G +AR + R+P GR+ R S +G
Sbjct: 418 LDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPD 477
Query: 54 ---EPAPPPFPKRGSRHRNSQTPEPAGLPLPLHPIR 86
P+P P P GS +S A P P P+R
Sbjct: 478 YRAPPSPEPPPSPGSADPDSSPLAKAASPSP--PLR 511
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.0 bits (71), Expect = 0.19
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
Query: 10 GAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHRN 69
GA PMGPR G P KNG DG G+ R E G PP P +G+R
Sbjct: 212 GASGPMGPRGPPGPPG----KNGD-----DGEAGKPGRPGERG-----PPGP-QGAR--- 253
Query: 70 SQTPEPAGLP 79
P AGLP
Sbjct: 254 -GLPGTAGLP 262
Score = 30.8 bits (68), Expect = 0.42
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 10 GAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHRN 69
GA P GP+ G P + + G G G + P P + G R
Sbjct: 413 GARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR 472
Query: 70 SQTPEPAGLPLP 81
+ P P GLP P
Sbjct: 473 GE-PGPTGLPGP 483
Score = 29.6 bits (65), Expect = 0.93
Identities = 32/92 (34%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 5 SGEKRGAEPPMGPRTSTGDP--SARVTKNGSQRVPA-DGRWGRSARVSETGWEPAPPPFP 61
SGE RG PMGP G P S R G++ P DG G ETG PA PP
Sbjct: 991 SGE-RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETG--PAGPP-- 1045
Query: 62 KRGSRHRNSQTPEPAGLPLPLHPIRASAGNWE 93
P G P P+ P S E
Sbjct: 1046 ---------GAPGAPGAPGPVGPAGKSGDRGE 1068
Score = 29.3 bits (64), Expect = 1.2
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 10 GAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETG-----WEPAPP-PFPKR 63
G P GP + G P A+ + + A G G + RV G P PP P K
Sbjct: 845 GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 904
Query: 64 GSRHRNSQTPEPAGLPLPLHP 84
G + +T PAG P + P
Sbjct: 905 GGKGPRGET-GPAGRPGEVGP 924
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 31.6 bits (70), Expect = 0.25
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 8 KRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRH 67
+RG E PMGPR G P + G G E G PP P
Sbjct: 622 QRGREGPMGPRGEAGPPGS-------------GEKGERGAAGEPG-PHGPPGVPGSVGPK 667
Query: 68 RNSQTPEPAGLPLP--LHPIRASAG 90
+S +P P G P P L +R G
Sbjct: 668 GSSGSPGPQGPPGPVGLQGLRGEVG 692
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 31.6 bits (70), Expect = 0.25
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 6 GEKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGS 65
G PP +++ G +A + S P+ +G++ + + PP G+
Sbjct: 258 GPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGA 317
Query: 66 RHRNSQTPEPAGLPLPLHPIRASAGNWEVCQTKLFRLLAIYVLGGGFVGRAPADLVLSCY 125
+ TP P P H ++A+ G + T + +YV GGG+ P S Y
Sbjct: 318 PQKYPPTPAPEYEP---HVLQANGGAYG---TPTMQGSPVYVGGGGYADPLPPPAGPSLY 371
Query: 126 GYRLLT 131
G L+
Sbjct: 372 GLNHLS 377
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 31.2 bits (69), Expect = 0.32
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 9 RGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 68
+G E P GP G P R + + + GR G G + AP +G R
Sbjct: 1056 KGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1115
Query: 69 NSQTPEPAGLPLPLHP 84
+ P GLP P P
Sbjct: 1116 DG-VQGPVGLPGPAGP 1130
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 31.2 bits (69), Expect = 0.32
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 9 RGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 68
+G E P GP G P R + + + GR G G + AP +G R
Sbjct: 1005 KGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1064
Query: 69 NSQTPEPAGLPLPLHP 84
+ P GLP P P
Sbjct: 1065 DG-VQGPVGLPGPAGP 1079
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 31.2 bits (69), Expect = 0.32
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 9 RGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHR 68
+G E P GP G P R + + + GR G G + AP +G R
Sbjct: 1044 KGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1103
Query: 69 NSQTPEPAGLPLPLHP 84
+ P GLP P P
Sbjct: 1104 DG-VQGPVGLPGPAGP 1118
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 31.2 bits (69), Expect = 0.32
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 7 EKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSR 66
E++ +G +T G S T +GS R P GR + G EP P P R
Sbjct: 715 EEQTTVASLGAQTLPGSDSVS-TWDGSVRTPG-GRVKEGGLKGQKG-EPGVPGPPGRAGP 771
Query: 67 HRNSQTPEPAGLPLPLHPI 85
+ P P GLP P+ P+
Sbjct: 772 PGSPCLPGPPGLPCPVSPL 790
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 31.2 bits (69), Expect = 0.32
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 7 EKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSR 66
E++ +G +T G S T +GS R P GR + G EP P P R
Sbjct: 300 EEQTTVASLGAQTLPGSDSVS-TWDGSVRTPG-GRVKEGGLKGQKG-EPGVPGPPGRAGP 356
Query: 67 HRNSQTPEPAGLPLPLHPI 85
+ P P GLP P+ P+
Sbjct: 357 PGSPCLPGPPGLPCPVSPL 375
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 31.2 bits (69), Expect = 0.32
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 7 EKRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSR 66
E++ +G +T G S T +GS R P GR + G EP P P R
Sbjct: 480 EEQTTVASLGAQTLPGSDSVS-TWDGSVRTPG-GRVKEGGLKGQKG-EPGVPGPPGRAGP 536
Query: 67 HRNSQTPEPAGLPLPLHPI 85
+ P P GLP P+ P+
Sbjct: 537 PGSPCLPGPPGLPCPVSPL 555
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.2 bits (69), Expect = 0.32
Identities = 22/68 (32%), Positives = 25/68 (36%)
Query: 10 GAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHRN 69
GA P GP G G ++PA G +A G P P P P GS R
Sbjct: 20 GAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRR 79
Query: 70 SQTPEPAG 77
EP G
Sbjct: 80 LDPKEPLG 87
>gi|23199971 T-cell activation Rho GTPase-activating protein isoform
a [Homo sapiens]
Length = 553
Score = 31.2 bits (69), Expect = 0.32
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 8 KRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGW--EPAPPPFPKRGS 65
+R PP G P+AR+ + SQ V + AR+ E P PP S
Sbjct: 410 ERPGSPPSYEEAMQG-PAARLVASESQTVGSMTVGSMRARMLEAHCLLPPLPPAHHVEDS 468
Query: 66 RHRNSQTPEPA-GL-PLP 81
RHR S+ P P GL PLP
Sbjct: 469 RHRGSKEPLPGHGLSPLP 486
>gi|21314774 T-cell activation Rho GTPase-activating protein isoform
b [Homo sapiens]
Length = 731
Score = 31.2 bits (69), Expect = 0.32
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 8 KRGAEPPMGPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGW--EPAPPPFPKRGS 65
+R PP G P+AR+ + SQ V + AR+ E P PP S
Sbjct: 588 ERPGSPPSYEEAMQG-PAARLVASESQTVGSMTVGSMRARMLEAHCLLPPLPPAHHVEDS 646
Query: 66 RHRNSQTPEPA-GL-PLP 81
RHR S+ P P GL PLP
Sbjct: 647 RHRGSKEPLPGHGLSPLP 664
>gi|239751337 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 30.8 bits (68), Expect = 0.42
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 16 GPRTSTGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHRNSQTPEP 75
GP + K G+ R G G A+ T P PP P RG R ++ + P
Sbjct: 82 GPSSFEESHQVITVKTGASR----GLAGSQAKAEPT--RPRRPPPPSRGHREKSGRETAP 135
Query: 76 AGLP 79
GLP
Sbjct: 136 RGLP 139
>gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 30.8 bits (68), Expect = 0.42
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 20 STGDPSARVTKNGSQRVPADGRWGRSARVSETGWEPAPPPFPKRGSRHRNSQTPEPAGLP 79
S DP AR + Q A G R R E W PAP P P +G+ E GLP
Sbjct: 183 SEPDPPARDAASPHQD-GAPGPGPRGGRGQE--WRPAPGPAPGQGAEASAQGRAEEEGLP 239
Query: 80 LPLH 83
H
Sbjct: 240 AKAH 243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,351,189
Number of Sequences: 37866
Number of extensions: 415516
Number of successful extensions: 2458
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 2243
Number of HSP's gapped (non-prelim): 360
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.