Guide to the Human Genome
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Name: LOC100287035 Sequence: fasta or formatted (186aa) NCBI GI: 239742943
Description:

PREDICTED: hypothetical protein XP_002342700

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         21           3
 C cysteine            2.7          5           1
 D aspartate           3.8          7           1
 E glutamate           3.8          7           1
 F phenylalanine       3.2          6           1
 G glycine            11.8         22           3
 H histidine           2.2          4           1
 I isoleucine          2.7          5           1
 K lysine              2.2          4           1
 L leucine             8.6         16           2
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            14.5         27           3
 Q glutamine           1.6          3           1
 R arginine           11.3         21           2
 S serine              5.4         10           1
 T threonine           4.3          8           1
 V valine              3.8          7           1
 W tryptophan          2.7          5           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342700 
LOC100290421          1.000   PREDICTED: hypothetical protein XP_002346857 
LOC100291811          0.573   PREDICTED: hypothetical protein XP_002345967 
NRG2                  0.053   neuregulin 2 isoform 2 
NRG2                  0.053   neuregulin 2 isoform 4 
NRG2                  0.053   neuregulin 2 isoform 3 
NRG2                  0.053   neuregulin 2 isoform 1 
PPP1R10               0.050   protein phosphatase 1, regulatory subunit 10 
SHANK1                0.050   SH3 and multiple ankyrin repeat domains 1 
BSN                   0.045   bassoon protein 
EMID1                 0.042   EMI domain containing 1 
LOC100291781          0.040   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          0.040   PREDICTED: hypothetical protein XP_002347567 
LOC100286890          0.040   PREDICTED: hypothetical protein XP_002343388 
ZNF828                0.040   zinc finger protein 828 
CASKIN1               0.037   CASK interacting protein 1 
LOC653548             0.037   PREDICTED: double homeobox, 4-like 
DUX4                  0.037   double homeobox, 4 
LOC728410             0.037   double homeobox, 4-like 
LOC653543             0.037   double homeobox, 4-like 
LOC653545             0.037   double homeobox, 4-like 
LOC653544             0.037   double homeobox, 4-like 
LOC100288568          0.037   PREDICTED: hypothetical protein XP_002343338 
BBC3                  0.037   BCL2 binding component 3 isoform 1 
NACA                  0.037   nascent polypeptide-associated complex alpha subuni...
ANKRD33B              0.034   PREDICTED: ankyrin repeat domain 33B 
LOC100130360          0.034   PREDICTED: hypothetical protein 
WBP11                 0.034   WW domain binding protein 11 
GGN                   0.034   gametogenetin 
ANKRD43               0.032   ankyrin repeat domain 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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