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Search of human proteins with 239754301
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 465 e-131
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ... 461 e-130
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ... 461 e-130
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 42 5e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 41 7e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 41 0.001
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 41 0.001
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 41 0.001
gi|38787970 tensin like C1 domain containing phosphatase isoform... 40 0.002
gi|38787957 tensin like C1 domain containing phosphatase isoform... 40 0.002
gi|38787941 tensin like C1 domain containing phosphatase isoform... 40 0.002
gi|33356148 formin-like 1 [Homo sapiens] 40 0.002
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 39 0.003
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 39 0.003
gi|9945318 MAX binding protein [Homo sapiens] 39 0.004
gi|40353727 synaptopodin isoform A [Homo sapiens] 39 0.005
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 39 0.005
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 38 0.006
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 38 0.006
gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 38 0.006
gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 38 0.006
gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo sap... 38 0.006
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 38 0.008
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.010
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 37 0.010
gi|60460889 Myb protein P42POP [Homo sapiens] 37 0.010
gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens] 37 0.013
gi|190343021 Sec24-related protein D [Homo sapiens] 37 0.013
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 37 0.017
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 465 bits (1196), Expect = e-131
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI 60
MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI
Sbjct: 1 MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI 60
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP 120
ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP
Sbjct: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP 120
Query: 121 RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA 180
RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA
Sbjct: 121 RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA 180
Query: 181 PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAGGDTWAR 221
PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAGGDTWAR
Sbjct: 181 PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAGGDTWAR 221
>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
sapiens]
Length = 221
Score = 461 bits (1187), Expect = e-130
Identities = 220/221 (99%), Positives = 220/221 (99%)
Query: 1 MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI 60
MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI
Sbjct: 1 MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI 60
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP 120
ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP
Sbjct: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP 120
Query: 121 RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA 180
RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA
Sbjct: 121 RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA 180
Query: 181 PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAGGDTWAR 221
PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEA GDTWAR
Sbjct: 181 PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAVGDTWAR 221
>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
sapiens]
Length = 221
Score = 461 bits (1187), Expect = e-130
Identities = 220/221 (99%), Positives = 220/221 (99%)
Query: 1 MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI 60
MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI
Sbjct: 1 MGRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCI 60
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP 120
ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP
Sbjct: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTP 120
Query: 121 RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA 180
RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA
Sbjct: 121 RGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILAAA 180
Query: 181 PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAGGDTWAR 221
PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEA GDTWAR
Sbjct: 181 PALLVVAPHALPCVGLGEGGQLLVPSLQGSMSEAVGDTWAR 221
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 42.0 bits (97), Expect = 4e-04
Identities = 47/154 (30%), Positives = 60/154 (38%), Gaps = 25/154 (16%)
Query: 14 ERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPL--------SPGRLLDHPVCIASFPH 65
++ G +G R APG R P + PA P +PGR + P
Sbjct: 8 QQGGGGGGGQGRHRHSSRAPGTRTP--ATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPS 65
Query: 66 PLPLPIHPWTHH-RGSSCSGSQRDIGSTES-------PPA--RTLRRGE-GRGGPAQGAR 114
P P HP RG + + +R +T PP R LR G GRG P +
Sbjct: 66 P-PAAAHPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGRPG---K 121
Query: 115 GPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGA 148
GP P P PP PPG ++A A GGA
Sbjct: 122 GPPPNPSRRLPPAPPGGRRTWLSALATGPAAGGA 155
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 41.6 bits (96), Expect = 5e-04
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW-THHRGSSCSG 84
R PPG P G P G + P P PG+ P P P P P +G
Sbjct: 152 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRS 211
Query: 85 SQRDIGSTESPPARTLRRGEGRGGPAQGARGPTP----TPRGSAPP-RPPGP 131
SQ G + PP + + +G P +GP P P+G PP +P GP
Sbjct: 212 SQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 263
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW--THHRGSSCS 83
+ PPG P G P G + P P PG+ P + P P P P GS
Sbjct: 213 QSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQ 272
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGPAQG------------ARGPTPTPRGSAPPRPP 129
++ G + PP + +G PA G +GP P+G P RPP
Sbjct: 273 SARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 330
Score = 35.4 bits (80), Expect = 0.039
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW-THHRGSSCSG 84
R PPG P G P G + P P PG+ P + P P P P +G
Sbjct: 91 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRS 150
Query: 85 SQRDIGSTESPPARTLRRGEG--------RGGPAQGARGPTPTPRGSAPPRPP 129
+ G + PP + + +G +G P QG + P P P PP
Sbjct: 151 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPP 203
Score = 32.0 bits (71), Expect = 0.43
Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 29 PPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW--THHRGSSCSGSQ 86
PPG P G P G P PG+ P P P P G+ G
Sbjct: 53 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 112
Query: 87 RDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPG 130
G + PP + R +G P + P + +P PPG
Sbjct: 113 PPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPG 156
Score = 28.9 bits (63), Expect = 3.6
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 31 GAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDI 89
G P G P G + P P PG+ P + P P P P +G G +
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP----QGPPPQGDKSR- 88
Query: 90 GSTESPPARTLRRGEGRGGPAQGA---RGPTPTP-RGSAPP-----RPPGP 131
S SPP G+ +G P QG +GP P P + PP RP GP
Sbjct: 89 -SPRSPP------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGP 132
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 41.2 bits (95), Expect = 7e-04
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW--THHRGSSCS 83
R PPG P G P G + P P PG+ P + P P P P GS
Sbjct: 236 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSR 295
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTP----TPRGSAPP-RPPGP 131
S+ G + PP + + +G P +GP P P+G PP +P GP
Sbjct: 296 SSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 348
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW--THHRGSSCS 83
R PPG P G P G + P P PG+ P + P P P P GS
Sbjct: 298 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSR 357
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGPAQG------------ARGPTPTPRGSAPPRPP 129
++ G + PP + +G PA G +GP P+G P RPP
Sbjct: 358 SARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415
Score = 37.7 bits (86), Expect = 0.008
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGS 85
R PPG P G P G + P P PG+ P + P P P P +G G
Sbjct: 112 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP----QGPPPQGD 167
Query: 86 QRDIGSTESPPARTLRRGEGRGGPAQGA---RGPTPTPRGSAPPRPPG 130
+ S+ SPP G+ +G P QG +GP P P P P G
Sbjct: 168 NKS-RSSRSPP------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Score = 34.7 bits (78), Expect = 0.066
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 27 REPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPW-THHRGSSCSG 84
R PPG P G P G + P P PG+ P + P P P P +G + S
Sbjct: 174 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQ 233
Query: 85 SQRDI-GSTESPPARTLRRGEG--------RGGPAQGARGPTPTPRGSAPPRPP 129
S R G + PP + + +G +G P QG P P P PP
Sbjct: 234 SARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287
Score = 34.3 bits (77), Expect = 0.086
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 25 GLREPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCS 83
G PPG P G P G + P P PG+ P + P P P P +G
Sbjct: 49 GPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP----QGPPPQ 104
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGPAQGA---RGPTPTPRGSAPPRPPG 130
G + S SPP G+ +G P QG +GP P P P P G
Sbjct: 105 GDKSR--SPRSPP------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 146
Score = 31.2 bits (69), Expect = 0.73
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 80 SSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGP 131
SS D+ ESP +L G +G P QG P P S P +P GP
Sbjct: 14 SSAQNLNEDVSQEESP---SLIAGNPQGAPPQGGNKPQGPP--SPPGKPQGP 60
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/119 (31%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Query: 29 PPGAPGGRIPPGSF---------PAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRG 79
PPG PG PG F PA +P PGR + P FP LP P P
Sbjct: 910 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGR--EGP---PGFPG-LPGPPGPPGREGP 963
Query: 80 SSCSGSQRDIGSTESPPARTLRRGEGRGGPA-----QGARGPTPTPRGSAPPRPPGPHL 133
+G + +G +P + + G G GA GP P PP PPGP L
Sbjct: 964 PGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGL 1022
Score = 36.6 bits (83), Expect = 0.017
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 11 GHLERQGAKVAARGGLR----EP--PGAPGGRIPPGS----FPAHVPLSPGRLLDHPVCI 60
G + G +V GGL+ EP PG PG PPGS P +P L +
Sbjct: 739 GSVRTPGGRVK-EGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 797
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESP-----------PARTLRRGEGRGGP 109
+ P P P P G D G P P +G+ +G P
Sbjct: 798 QTVPGPQGPPGPPGRDGTPGR-DGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD-KGDP 855
Query: 110 AQGARGPTPTPRGSAPPRPPGPHLR 134
G RGP P P+G PP PPGP R
Sbjct: 856 GVGERGP-PGPQG--PPGPPGPSFR 877
Score = 30.8 bits (68), Expect = 0.96
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 40/163 (24%)
Query: 2 GRFGEGLKSGHLERQGAK--VAARG--------GLREPPGAPGGRIPPG-SFPAHVP--- 47
G GE GH +GA ARG G PPG PG PPG PA
Sbjct: 971 GSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDME 1030
Query: 48 ------LSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLR 101
S R D P P P P G++ ++G+ P L
Sbjct: 1031 GSGGPFWSTARSADGPQGPPGLPGLKGDPGVP-------GLPGAKGEVGADGVPGFPGLP 1083
Query: 102 RGEGRGGPA-----QGARGPTPTPRGSA--------PPRPPGP 131
EG GP +G+RG P PP PPGP
Sbjct: 1084 GREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 1126
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 95 PPARTLRRGEGRGGPA-------QGARGPTPTPRGSAPPRPPGPHLRVVA 137
P ++R G GP +G +GP P PP PGPH + ++
Sbjct: 1370 PKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTIS 1419
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/119 (31%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Query: 29 PPGAPGGRIPPGSF---------PAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRG 79
PPG PG PG F PA +P PGR + P FP LP P P
Sbjct: 495 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGR--EGP---PGFPG-LPGPPGPPGREGP 548
Query: 80 SSCSGSQRDIGSTESPPARTLRRGEGRGGPA-----QGARGPTPTPRGSAPPRPPGPHL 133
+G + +G +P + + G G GA GP P PP PPGP L
Sbjct: 549 PGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGL 607
Score = 36.6 bits (83), Expect = 0.017
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 11 GHLERQGAKVAARGGLR----EP--PGAPGGRIPPGS----FPAHVPLSPGRLLDHPVCI 60
G + G +V GGL+ EP PG PG PPGS P +P L +
Sbjct: 324 GSVRTPGGRVK-EGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 382
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESP-----------PARTLRRGEGRGGP 109
+ P P P P G D G P P +G+ +G P
Sbjct: 383 QTVPGPQGPPGPPGRDGTPGR-DGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD-KGDP 440
Query: 110 AQGARGPTPTPRGSAPPRPPGPHLR 134
G RGP P P+G PP PPGP R
Sbjct: 441 GVGERGP-PGPQG--PPGPPGPSFR 462
Score = 30.8 bits (68), Expect = 0.96
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 40/163 (24%)
Query: 2 GRFGEGLKSGHLERQGAK--VAARG--------GLREPPGAPGGRIPPG-SFPAHVP--- 47
G GE GH +GA ARG G PPG PG PPG PA
Sbjct: 556 GSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDME 615
Query: 48 ------LSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLR 101
S R D P P P P G++ ++G+ P L
Sbjct: 616 GSGGPFWSTARSADGPQGPPGLPGLKGDPGVP-------GLPGAKGEVGADGVPGFPGLP 668
Query: 102 RGEGRGGPA-----QGARGPTPTPRGSA--------PPRPPGP 131
EG GP +G+RG P PP PPGP
Sbjct: 669 GREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 711
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 95 PPARTLRRGEGRGGPA-------QGARGPTPTPRGSAPPRPPGPHLRVVA 137
P ++R G GP +G +GP P PP PGPH + ++
Sbjct: 955 PKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTIS 1004
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/119 (31%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Query: 29 PPGAPGGRIPPGSF---------PAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRG 79
PPG PG PG F PA +P PGR + P FP LP P P
Sbjct: 675 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGR--EGP---PGFPG-LPGPPGPPGREGP 728
Query: 80 SSCSGSQRDIGSTESPPARTLRRGEGRGGPA-----QGARGPTPTPRGSAPPRPPGPHL 133
+G + +G +P + + G G GA GP P PP PPGP L
Sbjct: 729 PGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGL 787
Score = 36.6 bits (83), Expect = 0.017
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 11 GHLERQGAKVAARGGLR----EP--PGAPGGRIPPGS----FPAHVPLSPGRLLDHPVCI 60
G + G +V GGL+ EP PG PG PPGS P +P L +
Sbjct: 504 GSVRTPGGRVK-EGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 562
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESP-----------PARTLRRGEGRGGP 109
+ P P P P G D G P P +G+ +G P
Sbjct: 563 QTVPGPQGPPGPPGRDGTPGR-DGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD-KGDP 620
Query: 110 AQGARGPTPTPRGSAPPRPPGPHLR 134
G RGP P P+G PP PPGP R
Sbjct: 621 GVGERGP-PGPQG--PPGPPGPSFR 642
Score = 30.8 bits (68), Expect = 0.96
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 40/163 (24%)
Query: 2 GRFGEGLKSGHLERQGAK--VAARG--------GLREPPGAPGGRIPPG-SFPAHVP--- 47
G GE GH +GA ARG G PPG PG PPG PA
Sbjct: 736 GSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDME 795
Query: 48 ------LSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLR 101
S R D P P P P G++ ++G+ P L
Sbjct: 796 GSGGPFWSTARSADGPQGPPGLPGLKGDPGVP-------GLPGAKGEVGADGVPGFPGLP 848
Query: 102 RGEGRGGPA-----QGARGPTPTPRGSA--------PPRPPGP 131
EG GP +G+RG P PP PPGP
Sbjct: 849 GREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 891
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 95 PPARTLRRGEGRGGPA-------QGARGPTPTPRGSAPPRPPGPHLRVVA 137
P ++R G GP +G +GP P PP PGPH + ++
Sbjct: 1135 PKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTIS 1184
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/127 (33%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Query: 16 QGAKVAARGGLREPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPL-PLPIHP 73
QG + R R P AP R+ PG + P G+ + P S P PL P P+ P
Sbjct: 795 QGKESTRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPS--GSGPEPLAPSPVSP 852
Query: 74 ---------WTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSA 124
W R G D S SP TL R P QG RGP +P GS
Sbjct: 853 TFPPSSPSDWPQERSP---GGHSDGASPRSPVPTTLPGL--RHAPWQGPRGPPDSPDGS- 906
Query: 125 PPRPPGP 131
P P P
Sbjct: 907 -PLTPVP 912
Score = 28.1 bits (61), Expect = 6.2
Identities = 35/126 (27%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 11 GHLERQGAKVAARGGLREPPG---APGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPL 67
GHL G +A EP P G P P S L P
Sbjct: 737 GHLASAGPLASAES--LEPVSWREGPSGHSTLPRSPRDAPCSASSELSGP---------- 784
Query: 68 PLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTP-TPRGSAP- 125
P+H + +G S ++D S S P + L GE +Q G P P GS P
Sbjct: 785 STPLHTSSPVQGKE-STRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPE 843
Query: 126 PRPPGP 131
P P P
Sbjct: 844 PLAPSP 849
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/127 (33%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Query: 16 QGAKVAARGGLREPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPL-PLPIHP 73
QG + R R P AP R+ PG + P G+ + P S P PL P P+ P
Sbjct: 919 QGKESTRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPS--GSGPEPLAPSPVSP 976
Query: 74 ---------WTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSA 124
W R G D S SP TL R P QG RGP +P GS
Sbjct: 977 TFPPSSPSDWPQERSP---GGHSDGASPRSPVPTTLPGL--RHAPWQGPRGPPDSPDGS- 1030
Query: 125 PPRPPGP 131
P P P
Sbjct: 1031 -PLTPVP 1036
Score = 28.1 bits (61), Expect = 6.2
Identities = 35/126 (27%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 11 GHLERQGAKVAARGGLREPPG---APGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPL 67
GHL G +A EP P G P P S L P
Sbjct: 861 GHLASAGPLASAES--LEPVSWREGPSGHSTLPRSPRDAPCSASSELSGP---------- 908
Query: 68 PLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTP-TPRGSAP- 125
P+H + +G S ++D S S P + L GE +Q G P P GS P
Sbjct: 909 STPLHTSSPVQGKE-STRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPE 967
Query: 126 PRPPGP 131
P P P
Sbjct: 968 PLAPSP 973
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/127 (33%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Query: 16 QGAKVAARGGLREPPGAPGGRIPPG-SFPAHVPLSPGRLLDHPVCIASFPHPL-PLPIHP 73
QG + R R P AP R+ PG + P G+ + P S P PL P P+ P
Sbjct: 929 QGKESTRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPS--GSGPEPLAPSPVSP 986
Query: 74 ---------WTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSA 124
W R G D S SP TL R P QG RGP +P GS
Sbjct: 987 TFPPSSPSDWPQERSP---GGHSDGASPRSPVPTTLPGL--RHAPWQGPRGPPDSPDGS- 1040
Query: 125 PPRPPGP 131
P P P
Sbjct: 1041 -PLTPVP 1046
Score = 28.1 bits (61), Expect = 6.2
Identities = 35/126 (27%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 11 GHLERQGAKVAARGGLREPPG---APGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPL 67
GHL G +A EP P G P P S L P
Sbjct: 871 GHLASAGPLASAES--LEPVSWREGPSGHSTLPRSPRDAPCSASSELSGP---------- 918
Query: 68 PLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTP-TPRGSAP- 125
P+H + +G S ++D S S P + L GE +Q G P P GS P
Sbjct: 919 STPLHTSSPVQGKE-STRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPE 977
Query: 126 PRPPGP 131
P P P
Sbjct: 978 PLAPSP 983
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 39.7 bits (91), Expect = 0.002
Identities = 38/113 (33%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 24 GGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCS 83
GG PG P G P PA P +PG A+ P P PLP P S
Sbjct: 513 GGDAPTPGVPTGSPSPDLAPAAEP-APG---------AAPPPPPPLPGLPSPQEAPPSAP 562
Query: 84 GSQRDI-GSTESPPARTLRRG----EGRGGPAQGARGPTPTPRGSAPPRPPGP 131
+ GS E PPA L P G GP P P PP P GP
Sbjct: 563 PQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGP 615
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 39.3 bits (90), Expect = 0.003
Identities = 43/146 (29%), Positives = 52/146 (35%), Gaps = 26/146 (17%)
Query: 3 RFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIAS 62
+ G+GL G R PPG P R+ P PG L S
Sbjct: 207 QMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAP----------PG-LAAAAAARDS 255
Query: 63 FPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPT----- 117
P P+P GS GS + R LRRG+ GG +G GP+
Sbjct: 256 EPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGI-GPSRVSLL 314
Query: 118 --------PTPRGSAPPRPP-GPHLR 134
PRGSA P PP GP L+
Sbjct: 315 APDKKRLNNAPRGSAAPGPPRGPRLQ 340
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 39.3 bits (90), Expect = 0.003
Identities = 43/146 (29%), Positives = 52/146 (35%), Gaps = 26/146 (17%)
Query: 3 RFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIAS 62
+ G+GL G R PPG P R+ P PG L S
Sbjct: 207 QMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAP----------PG-LAAAAAARDS 255
Query: 63 FPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPT----- 117
P P+P GS GS + R LRRG+ GG +G GP+
Sbjct: 256 EPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGI-GPSRVSLL 314
Query: 118 --------PTPRGSAPPRPP-GPHLR 134
PRGSA P PP GP L+
Sbjct: 315 APDKKRLNNAPRGSAAPGPPRGPRLQ 340
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 38.9 bits (89), Expect = 0.004
Identities = 40/136 (29%), Positives = 50/136 (36%), Gaps = 27/136 (19%)
Query: 66 PLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAP 125
P PLP HP H S PPA P Q + TP + P
Sbjct: 375 PAPLPPHPHPHPH------------SVALPPAHL---------PVQQQQPQQKTPLPAPP 413
Query: 126 PRPPGPHLRVVAA--HLAWAAGGGAEVVVLTLVVPLLHGQRHVHALVCDGEQILA----A 179
P P P +V A HL AGGG+ V+ T Q H L G + +A +
Sbjct: 414 PPPAAPAQTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPS 473
Query: 180 APALLVVAPHALPCVG 195
AP+ V A P +G
Sbjct: 474 APSPAVQLAPATPPIG 489
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/119 (31%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 29 PPGAPGGRIPPGSFPAHV---PLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGS 85
PP PG PP S V P PGR +S P PLP P S S S
Sbjct: 686 PPWTPGASRPPSSLDGWVSPGPWEPGRG-------SSMSSPPPLPPPPPMSPSWSERSVS 738
Query: 86 QRDIGSTESPPARTLR-----------RGEGRGGPAQGARGPTP--TPRGSAPPRPPGP 131
+ PP+R L+ R + + GA P P PR PP PP P
Sbjct: 739 PLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENPRPFSPPRAPPPPPPPPP 797
Score = 31.6 bits (70), Expect = 0.56
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 26 LREP-PGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSG 84
+R P P PG PG+ A +P SP L P S PLP P P+ + R + S
Sbjct: 802 MRSPQPARPGSAAVPGAAFAPIPRSP--LPAGPSSCTSPRSPLPAPPRPFLYRRSPTDSD 859
Query: 85 SQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRG 122
D E G + G G PRG
Sbjct: 860 VSLD--------------SEDSGAKSPGILGYNICPRG 883
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 38.5 bits (88), Expect = 0.005
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 20/123 (16%)
Query: 24 GGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCS 83
GGL PP P PP P +PLS G +L P F H PLP P H S
Sbjct: 884 GGLGMPPSLP----PPPLQPPSLPLSMGPVLPDP-----FTHYAPLPSWPCYPHVSPS-- 932
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPHLRVVA-AHLAW 142
G PP T+ G P A PT + + PP P P+ L W
Sbjct: 933 ------GYPCLPPPPTVPLVSGT--PGAYAVPPTCSVPWAPPPAPVSPYSSTCTYGPLGW 984
Query: 143 AAG 145
G
Sbjct: 985 GPG 987
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 38.1 bits (87), Expect = 0.006
Identities = 46/153 (30%), Positives = 52/153 (33%), Gaps = 30/153 (19%)
Query: 13 LERQGAKVAARGGLRE--------PPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFP 64
+E QG A R +R PP G ++P P V + GR P
Sbjct: 294 IEDQGGLEAVRQEMRRQEPLPPPPPPSRGGNQLPR---PPIVGGNKGRSGPLPPVPLGIA 350
Query: 65 HPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGE------GRGGPAQGARGPTP 118
P P P P RG G PP T R G G GGP P P
Sbjct: 351 PPPPTPRGPPPPGRG----------GPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPP 400
Query: 119 TP---RGSAPPRPPGPHLRVVAAHLAWAAGGGA 148
P G+ P PP P V A LA G GA
Sbjct: 401 PPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGA 433
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 38.1 bits (87), Expect = 0.006
Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 25/108 (23%)
Query: 29 PPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASF-----PHPLPLPIHPWTHHRGSSCS 83
PPG PG PPG P PG++L P+ P P+ P P+
Sbjct: 243 PPGPPG---PPG------PPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPF--------- 284
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGP 131
Q +G P + GP +GP P P G PPRPPGP
Sbjct: 285 -GQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPP-GPFPPRPPGP 330
Score = 31.6 bits (70), Expect = 0.56
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 26/114 (22%)
Query: 25 GLREPPGAPGGR----IPPGSFPAHVPLSPGRLLDHPVCIASFPH-PLPLPIHPWTHHRG 79
G PPG P + PPG FP P PG L P+ +A PH P P P P
Sbjct: 302 GYGPPPGPPPPQQGPPPPPGPFP---PRPPGP-LGPPLTLAPPPHLPGPPPGAP------ 351
Query: 80 SSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPT-PRGSAPPRPPGPH 132
+ PP G P +RGP PT P G PP G +
Sbjct: 352 ----PPAPHVNPAFFPPP------TNSGMPTSDSRGPPPTDPYGRPPPYDRGDY 395
Score = 30.4 bits (67), Expect = 1.2
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 103 GEGRGGPAQGARGPTPTPRGSAPPRPP-GP 131
G+ GPA P P P G PPRPP GP
Sbjct: 214 GDRFPGPAGPGGPPPPFPAGQTPPRPPLGP 243
>gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 38.1 bits (87), Expect = 0.006
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 47 PLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGR 106
P +LLD + FP P+ + + G R + SP R R
Sbjct: 51 PCDVSKLLD----FSQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVR 106
Query: 107 GGPAQGARGPTP---TPRGSAPPRPPGPHLR 134
G + GP P +P G PP P GPH R
Sbjct: 107 GASVKRTGGPAPAQPSPPGPLPPTPHGPHAR 137
>gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 38.1 bits (87), Expect = 0.006
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 47 PLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGR 106
P +LLD + FP P+ + + G R + SP R R
Sbjct: 51 PCDVSKLLD----FSQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVR 106
Query: 107 GGPAQGARGPTP---TPRGSAPPRPPGPHLR 134
G + GP P +P G PP P GPH R
Sbjct: 107 GASVKRTGGPAPAQPSPPGPLPPTPHGPHAR 137
>gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo
sapiens]
Length = 284
Score = 38.1 bits (87), Expect = 0.006
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 47 PLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGR 106
P +LLD + FP P+ + + G R + SP R R
Sbjct: 51 PCDVSKLLD----FSQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVR 106
Query: 107 GGPAQGARGPTP---TPRGSAPPRPPGPHLR 134
G + GP P +P G PP P GPH R
Sbjct: 107 GASVKRTGGPAPAQPSPPGPLPPTPHGPHAR 137
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 37.7 bits (86), Expect = 0.008
Identities = 44/167 (26%), Positives = 63/167 (37%), Gaps = 27/167 (16%)
Query: 6 EGLKSGHLERQGAKVAARGGLRE------PPGAPGGRIPPGSFPAHVPLS---------P 50
+G K+G A + GG E P GA G + P + P + P
Sbjct: 81 QGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRP 140
Query: 51 GRLLDHPVCIASFP----HPLPLPIHPWTHHRGSSCSGS--QRDIGSTESPPARTLR--- 101
G + P + S P P PL G G +R+ G+ + PP R R
Sbjct: 141 GPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKG 200
Query: 102 -RGEGRGGPAQGARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGG 147
R + RGG G G +P+P S+ + PG R + +A GG
Sbjct: 201 VRAQQRGG--SGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGG 245
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 93 ESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAE 149
E PP L G G GG GA G + G AP PP R G G E
Sbjct: 159 EPPP---LGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGE 212
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.4 bits (85), Expect = 0.010
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 25 GLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSG 84
G PPG PG R P G+ A P P + +P + +G
Sbjct: 1246 GQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVG---------------EKGEPGEA 1290
Query: 85 SQRDIGSTESPPARTLRRGE-GRGGPAQGARGPTPTPRGSAPPRPPGP 131
+ + PP RGE G GP+ GA GP P P+G PP GP
Sbjct: 1291 GEPGLPGEGGPPGPKGERGEKGESGPS-GAAGP-PGPKG--PPGDDGP 1334
Score = 32.0 bits (71), Expect = 0.43
Identities = 43/132 (32%), Positives = 51/132 (38%), Gaps = 35/132 (26%)
Query: 30 PGAPGGRIPPGSFPAHVPLSPGRLLD--------HPVCIASFPHP----------LPLPI 71
PG+PG PPG P P PG D HP I P LP P
Sbjct: 1452 PGSPGPDGPPG--PMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP- 1508
Query: 72 HPWTHHRGSSCSGSQRDIGSTESPPARTLRRG-EGRGGP--AQGARGPTPTPRGSA---- 124
+GSS ++ I P G G GP A+G+ GPT P+G A
Sbjct: 1509 ------QGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTG-PKGEAGHPG 1561
Query: 125 PPRPPGPHLRVV 136
PP PPGP V+
Sbjct: 1562 PPGPPGPPGEVI 1573
Score = 31.6 bits (70), Expect = 0.56
Identities = 39/139 (28%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 2 GRFGEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGS-----FPAHVPLSPGRLLDH 56
GR G G L G K + G+ PG PG + P GS FP GR
Sbjct: 847 GRGGPNGDPGPLGPPGEK--GKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGR---- 900
Query: 57 PVCIASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPA-----Q 111
P P + G + G T P + G+G GP
Sbjct: 901 ---------GTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPN 951
Query: 112 GARGPTPTPRGSAPPRPPG 130
G +GPT P PP PPG
Sbjct: 952 GPQGPTGFPGPKGPPGPPG 970
Score = 31.2 bits (69), Expect = 0.73
Identities = 37/114 (32%), Positives = 41/114 (35%), Gaps = 28/114 (24%)
Query: 29 PPGAPGGRIPPG--------SFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGS 80
PPG PG + PG P L PG+ D P + FP LP
Sbjct: 1019 PPGPPGEQGLPGLAGKEGTKGDPGPAGL-PGK--DGPPGLRGFPGDRGLP---------- 1065
Query: 81 SCSGSQRDIG--STESPPARTLRRGE-GRGGPAQGARGPTPTPRGSAPPRPPGP 131
G +G E PP G G GPA GA GP P P PPGP
Sbjct: 1066 ---GPVGALGLKGNEGPPGPPGPAGSPGERGPA-GAAGPIGIPGRPGPQGPPGP 1115
Score = 28.5 bits (62), Expect = 4.7
Identities = 39/130 (30%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 5 GEGLKSGHLERQGAKVAARGGLREPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFP 64
GEG G +G K G G PG + PPG SPG PV P
Sbjct: 1297 GEGGPPGPKGERGEK--GESGPSGAAGPPGPKGPPGDDGPKG--SPG-----PVGFPGDP 1347
Query: 65 HPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSA 124
P P P G + G T SP GP G GP+ P
Sbjct: 1348 GPPGEP-GPAGQDGPPGDKGDDGEPGQTGSP------------GPT-GEPGPSGPPGKRG 1393
Query: 125 PPRPPGPHLR 134
PP P GP R
Sbjct: 1394 PPGPAGPEGR 1403
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 24/122 (19%)
Query: 38 PPGSF-PAHVPLSPGRLLDHPVCIASFP----HPLPLPIHPWTHHRGSSCSGSQRDIGST 92
PP ++ P+ + L PG D +A P+PLP+ + +G S
Sbjct: 106 PPDTWVPSRLDLRPGESEDMLELVAEVRIGDRDPIPLPVPSLLPRLRAWRTGKTVSPQSN 165
Query: 93 ESPP--ARTLRRGEGRGGPA------QGARGPTPTPRGS-----------APPRPPGPHL 133
S P AR L G G GGPA + P+P+P S APP PP P
Sbjct: 166 SSRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRF 225
Query: 134 RV 135
+
Sbjct: 226 DI 227
Score = 29.6 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 84 GSQRDIGSTESPPARTLRRGEGRGGP-AQGARGPTPTPRGS 123
G RD G ++ R+ RGE R G ++ A P P P GS
Sbjct: 632 GKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGS 672
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 37.4 bits (85), Expect = 0.010
Identities = 40/125 (32%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 17 GAKVAARG---GLREPPGAPGGRIPPGS-FPAHVPLSPGRLLDHPVCIASFPHPLPLPIH 72
G VAA G G EPP AP + PP S P LS R D ++
Sbjct: 121 GPGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE 180
Query: 73 PWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPH 132
PW + G ESPP L+ P Q R +P APP PP P
Sbjct: 181 PWARPSCTPQEGGCPRPKERESPPPSALQ-------PVQLPR-LALSPPPPAPPLPPPPP 232
Query: 133 LRVVA 137
L VA
Sbjct: 233 LAQVA 237
>gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens]
Length = 856
Score = 37.0 bits (84), Expect = 0.013
Identities = 50/169 (29%), Positives = 64/169 (37%), Gaps = 32/169 (18%)
Query: 9 KSGHLERQGA-KVAARGGLREPPGAPGGRIP---PGSFPAHVPLSPGRLLDHP----VCI 60
+S L Q A +V A+GG P P +P PG PA P S L P V +
Sbjct: 698 RSNPLFHQAASRVPAKGGAPAPSRGPQELVPTTHPGQ-PARHPASSVALKRPPPAPPVTV 756
Query: 61 ASFPHPLPLPIHPWTHHRGSSCSGSQRDIGSTESPPARTLRRGEGRG--GPAQGARGP-- 116
+S P P+P+ ++ I T +PP ++ G G GPA+GA GP
Sbjct: 757 SSPPFPVPVYTR----------QAPKQVIKPTFAPPVPPVKPGAGAANPGPAEGAVGPKV 806
Query: 117 ---TPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTLVVPLLHG 162
P R P P A W G EV VP HG
Sbjct: 807 ALKPPIQRKQGAELPQHPR---GAPAPVWKFG---EVAAEKPCVPAFHG 849
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 37.0 bits (84), Expect = 0.013
Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 23/149 (15%)
Query: 5 GEGLKSGHLERQG--AKVAARGGLREPPGAPG-----GRIPPGSFPA---HVPLSPGRLL 54
G GL H G + A+ G+ +P G G G +PPG P +
Sbjct: 18 GIGLSPPHYGHYGDPSHTASPTGMMKPAGPLGATATRGMLPPGPPPPGPHQFGQNGAHAT 77
Query: 55 DHPVCIASFPHPLPL--------PIHP--WTHHRGSSCSGSQRDIGSTESPPARTLRRGE 104
HP FP P P+ P P + + G + S +GS S + G
Sbjct: 78 GHPP--QRFPGPPPVNNVASSHAPYQPSAQSSYPGPISTSSVTQLGSQLSA-MQINSYGS 134
Query: 105 GRGGPAQGARGPTPTPRGSAPPRPPGPHL 133
G P+QG GP PPRPP P +
Sbjct: 135 GMAPPSQGPPGPLSATSLQTPPRPPQPSI 163
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 36.6 bits (83), Expect = 0.017
Identities = 37/113 (32%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 27 REPPGAPGGRIPPGSFPAHVPLSPGRLLDHPVCIASFPHPLPLPIHPWTHHRGSSCSGSQ 86
R PG PG PPGS A PG P P + RG+ SG +
Sbjct: 1774 RNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPR 1833
Query: 87 RDIGSTESPPARTLRRGEGRGGP--AQGARGPTPTPRG-------SAPPRPPG 130
PP +GE R GP + G+RGP P P G PP PPG
Sbjct: 1834 ----GLPGPPG---PQGESRTGPPGSTGSRGP-PGPPGRPGNSGIRGPPGPPG 1878
Score = 27.7 bits (60), Expect = 8.1
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 80 SSCSGSQRDIGSTESP-PARTLRRGEGRGGPA-----QGARGPTPTPRGS----APPRPP 129
+SC+ +Q +G P PA G G GP GA GP P PRG P PP
Sbjct: 1573 NSCTCTQDSVGPPGPPGPAG----GPGAKGPRGERGISGAIGP-PGPRGDIGPPGPQGPP 1627
Query: 130 GP 131
GP
Sbjct: 1628 GP 1629
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,314,666
Number of Sequences: 37866
Number of extensions: 940038
Number of successful extensions: 9838
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 682
Number of HSP's that attempted gapping in prelim test: 7031
Number of HSP's gapped (non-prelim): 2997
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.