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Search of human proteins with 239754166
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754166 PREDICTED: hypothetical protein [Homo sapiens] 191 1e-49
gi|239748699 PREDICTED: hypothetical protein [Homo sapiens] 191 1e-49
gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo ... 191 1e-49
gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens] 43 5e-05
gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo ... 43 5e-05
gi|188536004 zinc finger protein 469 [Homo sapiens] 38 0.002
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 37 0.003
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 37 0.003
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 36 0.006
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 36 0.008
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent R... 35 0.017
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 34 0.022
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 34 0.022
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 33 0.038
gi|7705353 three prime repair exonuclease 1 isoform a [Homo sapi... 33 0.050
gi|226371735 iroquois homeobox 3 [Homo sapiens] 33 0.050
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 32 0.085
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 32 0.085
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens] 32 0.11
gi|20270357 zinc finger, AN1-type domain 2B [Homo sapiens] 32 0.11
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 32 0.14
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 32 0.14
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 32 0.14
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 32 0.14
gi|9257222 forkhead box O1 [Homo sapiens] 32 0.14
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 32 0.14
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 32 0.14
gi|30410035 late cornified envelope 5A [Homo sapiens] 32 0.14
>gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 191 bits (485), Expect = 1e-49
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG
Sbjct: 1 MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
Query: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE
Sbjct: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
>gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 191 bits (485), Expect = 1e-49
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG
Sbjct: 1 MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
Query: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE
Sbjct: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
>gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo
sapiens]
Length = 91
Score = 191 bits (485), Expect = 1e-49
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG
Sbjct: 1 MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
Query: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE
Sbjct: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
>gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
Length = 133
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 43 CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
C A AS A+ CSTAPGP+ CPRAEE R
Sbjct: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
>gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo
sapiens]
Length = 133
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 43 CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
C A AS A+ CSTAPGP+ CPRAEE R
Sbjct: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 7 SAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAA--PCSTAPGPIDC 64
S GS R AS G + L PAP A SPTSAA PCS P P +
Sbjct: 2047 SRSGSEGRTPERASSPGLNKPLLATGDSPAPSVGDLAACAPSPTSAAHMPCSLGPLPRED 2106
Query: 65 PRAEECRRKHHGTGRQLRLRPGSR 88
P R + G G QL P R
Sbjct: 2107 PLTSPSRAQ-GGLGGQLPASPSCR 2129
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 6 SSAGGSISRRALA--ASPRG-RARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
+S GGS + + A PR + R+ P PEPA A P SP +A +TA GP
Sbjct: 497 ASTGGSQAASVITYTAPPRPPKKREYPPPPPEPA-------ATPTSPATAVSPATAAGPA 549
Query: 63 DCPRAEECRRKHHGTGRQL 81
EE + ++ GR L
Sbjct: 550 MATTTEEAKGRNPRAGRTL 568
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 28 LQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGP 61
L P + PAP A+ PASP P + PGP
Sbjct: 439 LSPTLNTPAPVAM-----PASPPPGPPPAPEPGP 467
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 6 SSAGGSISRRALA--ASPRG-RARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
+S GGS + + A PR + R+ P PEPA A P SP +A +TA GP
Sbjct: 497 ASTGGSQAASVITYTAPPRPPKKREYPPPPPEPA-------ATPTSPATAVSPATAAGPA 549
Query: 63 DCPRAEECRRKHHGTGRQL 81
EE + ++ GR L
Sbjct: 550 MATTTEEAKGRNPRAGRTL 568
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 28 LQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGP 61
L P + PAP A+ PASP P + PGP
Sbjct: 439 LSPTLNTPAPVAM-----PASPPPGPPPAPEPGP 467
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 5 PSSAGGSISRRALAASPRGRARDLQPAMPE--PAPDAVGSCAA-------PASPTSAAPC 55
PSS GS R +A +PA P+ PAP A SC A PA TS AP
Sbjct: 2366 PSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAPEPFAELPAPATSLAPA 2425
Query: 56 STAPGPIDCPRAEECRRKHHGTGRQLRLRPG 86
P P+ ++ R + R RPG
Sbjct: 2426 PLITMPATRPKPKKARAAEESGAKGPR-RPG 2455
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 10 GSISRRALAASPRGRARD-----LQPAMPEPAPDAVGSCAAPAS-PTSAAPCS 56
GS +R A+A P G + L PEPAP + G+ A A P S P +
Sbjct: 593 GSFARDAVAVRPGGCGKKSPFGGLGTMKPEPAPTSAGASRAQARLPHSGGPAA 645
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 RSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
R+PS AG S ++ + A +P GRA Q + + +P G+ ASP A+P T PG
Sbjct: 13 RTPS-AGASPAQASPAGTPPGRASPAQASPAQASP--AGTPPGRASPAQASPAGTPPGRA 69
Query: 63 DCPRA 67
RA
Sbjct: 70 SPGRA 74
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 15 RALAASPRGRARDLQPAMPEPAPDAVGSCAAPA-SPTSAAPCSTAPGPIDCPRAEECRRK 73
+AL A R + PAP A G C PA SP +A + G P A R
Sbjct: 456 QALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASAATRM 515
Query: 74 HHGTGRQLRLRPG 86
G+GR+ RPG
Sbjct: 516 WQGSGRR---RPG 525
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 15 RALAASPRGRARDLQPAMPEPAPDAVGSCAAPA-SPTSAAPCSTAPGPIDCPRAEECRRK 73
+AL A R + PAP A G C PA SP +A + G P A R
Sbjct: 456 QALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASAATRM 515
Query: 74 HHGTGRQLRLRPG 86
G+GR+ RPG
Sbjct: 516 WQGSGRR---RPG 525
>gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent
Rac exchange factor 1 [Homo sapiens]
Length = 1659
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 30 PAMPEPAPDAVGSCA--APASPTSAAPCSTAPGPIDCPRAEECRRKHHGTGRQLRLR 84
P+ EP D G CA P +P +AAP S+ PGP R E RQLRLR
Sbjct: 4 PSGSEPGGDGAGDCAHPDPRAPGAAAP-SSGPGPCAAARESE---------RQLRLR 50
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 3 RSPSSAGGSISRRALAASPRGRARDL--------------QPAMPEPAPDAVGSCAAPAS 48
RSP+ + S LAA RG+ R L +PA P+ A +V PAS
Sbjct: 762 RSPAKRAEAASM--LAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSV----PPAS 815
Query: 49 PTSAAPCSTAPGP----IDCPRAEECRRK 73
P A P + PGP D P E R+K
Sbjct: 816 PARAPPATETPGPEKAATDLPAPETPRKK 844
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 3 RSPSSAGGSISRRALAASPRGRARDL--------------QPAMPEPAPDAVGSCAAPAS 48
RSP+ + S LAA RG+ R L +PA P+ A +V PAS
Sbjct: 757 RSPAKRAEAASM--LAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSV----PPAS 810
Query: 49 PTSAAPCSTAPGP----IDCPRAEECRRK 73
P A P + PGP D P E R+K
Sbjct: 811 PARAPPATETPGPEKAATDLPAPETPRKK 839
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 3 RSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
+ P SA +I+ A AA+ A P A A + AA A+P AA + AP P
Sbjct: 490 KRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPA 549
Query: 63 DCP 65
P
Sbjct: 550 AAP 552
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 6 SSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTA 58
++A + + A AA A PA+ A A+ + AAPA +AAP A
Sbjct: 504 AAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAA 556
>gi|7705353 three prime repair exonuclease 1 isoform a [Homo
sapiens]
Length = 369
Score = 33.1 bits (74), Expect = 0.050
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 2 CRSPSSAGGSISRRALAASPRGRARDL-------------QPAMPEPAPDAVGSCAAPAS 48
C SP SA G+ A P G + L QP + E AV CA +
Sbjct: 43 CSSPGSAAGTYPTMGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESP 102
Query: 49 PTSAAPCSTAPGP 61
PTS P T P P
Sbjct: 103 PTSQGPPPTVPPP 115
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 33 PEPAPDAVGSCAAPASPTSAAPCSTAPGP 61
P P P AV S + P+ P S PC+ AP P
Sbjct: 312 PAPPPVAVASPSLPSPPVSLDPCAPAPAP 340
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.3 bits (72), Expect = 0.085
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 2 CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDA 39
CR +GG+ SRRA A PR R P P AP A
Sbjct: 213 CRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTAPAA 250
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 32.3 bits (72), Expect = 0.085
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 2 CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDA 39
CR +GG+ SRRA A PR R P P AP A
Sbjct: 142 CRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTAPAA 179
>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
Length = 647
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 27 DLQPAMPEPAPD---AVGSCAAPASPTSAAPCSTAP-GP 61
DL+P +P P P AV P +PT +APC P GP
Sbjct: 313 DLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGP 351
>gi|20270357 zinc finger, AN1-type domain 2B [Homo sapiens]
Length = 257
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 6 SSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAP 59
S G SR LAA R +A +P P+ + SC +P+ T+ +P TAP
Sbjct: 135 SGEGHPTSRAGLAAISRAQAVASTSTVPSPS-QTMPSCTSPSRATTRSPSWTAP 187
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 5 PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
PS+ S R ++ ++P P +P P P + APA P AP APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 5 PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
PS+ S R ++ ++P P +P P P + APA P AP APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 5 PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
PS+ S R ++ ++P P +P P P + APA P AP APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 5 PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
PS+ S R ++ ++P P +P P P + APA P AP APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 3 RSPSSAGGSISRRALAASPRGRARDLQ--------PAMPEPAPDAVGSCAAPASPTSAAP 54
++P S +++ A AA+ G D Q PA P+P P S P P +A P
Sbjct: 85 QAPGSVAAAVAAAAAAAATGGLCGDFQGPEAGCLHPAPPQPPPPGPLSQHPPVPPAAAGP 144
Query: 55 CSTAP 59
+ P
Sbjct: 145 LAGQP 149
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 2 CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGS---CAAPASPTSAAPCSTA 58
CRSP+ GG SR + A RG P + +P P+ + + T PC
Sbjct: 115 CRSPAR-GGDCSRNSCLAWHRGAPAGETPPVCDPCPERIQNHPRTQLCEVHTDCWPCQPG 173
Query: 59 PGPIDCPR 66
G CPR
Sbjct: 174 TGAPTCPR 181
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 2 CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGS---CAAPASPTSAAPCSTA 58
CRSP+ GG SR + A RG P + +P P+ + + T PC
Sbjct: 115 CRSPAR-GGDCSRNSCLAWHRGAPAGETPPVCDPCPERIQNHPRTQLCEVHTDCWPCQPG 173
Query: 59 PGPIDCPR 66
G CPR
Sbjct: 174 TGAPTCPR 181
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 33 PEPAPDAVGSCAAPASPTSAAPCSTAPGPIDCPRAEECRRKHHGTGRQLRLRPGS 87
P+ P C+AP P ++ C ++ G C HH + LR RP S
Sbjct: 30 PKCPPKCPPQCSAPCPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQS 84
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,107,699
Number of Sequences: 37866
Number of extensions: 298079
Number of successful extensions: 3624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 361
Number of HSP's that attempted gapping in prelim test: 2882
Number of HSP's gapped (non-prelim): 1038
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.