Guide to the Human Genome
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Search of human proteins with 239754166

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
         (91 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]           191   1e-49
gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]           191   1e-49
gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo ...   191   1e-49
gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]           43   5e-05
gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo ...    43   5e-05
gi|188536004 zinc finger protein 469 [Homo sapiens]                    38   0.002
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    37   0.003
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    37   0.003
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         36   0.006
gi|116256363 transmembrane protease, serine 13 [Homo sapiens]          36   0.008
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent R...    35   0.017
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    34   0.022
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    34   0.022
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          33   0.038
gi|7705353 three prime repair exonuclease 1 isoform a [Homo sapi...    33   0.050
gi|226371735 iroquois homeobox 3 [Homo sapiens]                        33   0.050
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]            32   0.085
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ...    32   0.085
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]        32   0.11 
gi|20270357 zinc finger, AN1-type domain 2B [Homo sapiens]             32   0.11 
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho...    32   0.14 
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho...    32   0.14 
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho...    32   0.14 
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom...    32   0.14 
gi|9257222 forkhead box O1 [Homo sapiens]                              32   0.14 
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]          32   0.14 
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]          32   0.14 
gi|30410035 late cornified envelope 5A [Homo sapiens]                  32   0.14 

>gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 91

 Score =  191 bits (485), Expect = 1e-49
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
          MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG
Sbjct: 1  MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60

Query: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
          PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE
Sbjct: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91


>gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 91

 Score =  191 bits (485), Expect = 1e-49
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
          MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG
Sbjct: 1  MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60

Query: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
          PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE
Sbjct: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91


>gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo
          sapiens]
          Length = 91

 Score =  191 bits (485), Expect = 1e-49
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
          MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG
Sbjct: 1  MCRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60

Query: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91
          PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE
Sbjct: 61 PIDCPRAEECRRKHHGTGRQLRLRPGSRTTE 91


>gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
          Length = 133

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 19/29 (65%), Positives = 21/29 (72%)

Query: 43  CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
           C A AS   A+ CSTAPGP+ CPRAEE R
Sbjct: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128


>gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo
           sapiens]
          Length = 133

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 19/29 (65%), Positives = 21/29 (72%)

Query: 43  CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
           C A AS   A+ CSTAPGP+ CPRAEE R
Sbjct: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 7    SAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAA--PCSTAPGPIDC 64
            S  GS  R    AS  G  + L      PAP      A   SPTSAA  PCS  P P + 
Sbjct: 2047 SRSGSEGRTPERASSPGLNKPLLATGDSPAPSVGDLAACAPSPTSAAHMPCSLGPLPRED 2106

Query: 65   PRAEECRRKHHGTGRQLRLRPGSR 88
            P     R +  G G QL   P  R
Sbjct: 2107 PLTSPSRAQ-GGLGGQLPASPSCR 2129


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 6   SSAGGSISRRALA--ASPRG-RARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
           +S GGS +   +   A PR  + R+  P  PEPA       A P SP +A   +TA GP 
Sbjct: 497 ASTGGSQAASVITYTAPPRPPKKREYPPPPPEPA-------ATPTSPATAVSPATAAGPA 549

Query: 63  DCPRAEECRRKHHGTGRQL 81
                EE + ++   GR L
Sbjct: 550 MATTTEEAKGRNPRAGRTL 568



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 28  LQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGP 61
           L P +  PAP A+     PASP    P +  PGP
Sbjct: 439 LSPTLNTPAPVAM-----PASPPPGPPPAPEPGP 467


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 6   SSAGGSISRRALA--ASPRG-RARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
           +S GGS +   +   A PR  + R+  P  PEPA       A P SP +A   +TA GP 
Sbjct: 497 ASTGGSQAASVITYTAPPRPPKKREYPPPPPEPA-------ATPTSPATAVSPATAAGPA 549

Query: 63  DCPRAEECRRKHHGTGRQL 81
                EE + ++   GR L
Sbjct: 550 MATTTEEAKGRNPRAGRTL 568



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 28  LQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGP 61
           L P +  PAP A+     PASP    P +  PGP
Sbjct: 439 LSPTLNTPAPVAM-----PASPPPGPPPAPEPGP 467


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 5    PSSAGGSISRRALAASPRGRARDLQPAMPE--PAPDAVGSCAA-------PASPTSAAPC 55
            PSS  GS          R +A   +PA P+  PAP A  SC A       PA  TS AP 
Sbjct: 2366 PSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAPEPFAELPAPATSLAPA 2425

Query: 56   STAPGPIDCPRAEECRRKHHGTGRQLRLRPG 86
                 P   P+ ++ R       +  R RPG
Sbjct: 2426 PLITMPATRPKPKKARAAEESGAKGPR-RPG 2455



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 10  GSISRRALAASPRGRARD-----LQPAMPEPAPDAVGSCAAPAS-PTSAAPCS 56
           GS +R A+A  P G  +      L    PEPAP + G+  A A  P S  P +
Sbjct: 593 GSFARDAVAVRPGGCGKKSPFGGLGTMKPEPAPTSAGASRAQARLPHSGGPAA 645


>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
          Length = 567

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 3  RSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
          R+PS AG S ++ + A +P GRA   Q +  + +P   G+    ASP  A+P  T PG  
Sbjct: 13 RTPS-AGASPAQASPAGTPPGRASPAQASPAQASP--AGTPPGRASPAQASPAGTPPGRA 69

Query: 63 DCPRA 67
             RA
Sbjct: 70 SPGRA 74


>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 15  RALAASPRGRARDLQPAMPEPAPDAVGSCAAPA-SPTSAAPCSTAPGPIDCPRAEECRRK 73
           +AL A    R    +     PAP A G C  PA SP +A   +   G    P A    R 
Sbjct: 456 QALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASAATRM 515

Query: 74  HHGTGRQLRLRPG 86
             G+GR+   RPG
Sbjct: 516 WQGSGRR---RPG 525


>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 15  RALAASPRGRARDLQPAMPEPAPDAVGSCAAPA-SPTSAAPCSTAPGPIDCPRAEECRRK 73
           +AL A    R    +     PAP A G C  PA SP +A   +   G    P A    R 
Sbjct: 456 QALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAAREAARLRGARPGPAASAATRM 515

Query: 74  HHGTGRQLRLRPG 86
             G+GR+   RPG
Sbjct: 516 WQGSGRR---RPG 525


>gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent
          Rac exchange factor 1 [Homo sapiens]
          Length = 1659

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 12/57 (21%)

Query: 30 PAMPEPAPDAVGSCA--APASPTSAAPCSTAPGPIDCPRAEECRRKHHGTGRQLRLR 84
          P+  EP  D  G CA   P +P +AAP S+ PGP    R  E         RQLRLR
Sbjct: 4  PSGSEPGGDGAGDCAHPDPRAPGAAAP-SSGPGPCAAARESE---------RQLRLR 50


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 24/89 (26%)

Query: 3   RSPSSAGGSISRRALAASPRGRARDL--------------QPAMPEPAPDAVGSCAAPAS 48
           RSP+    + S   LAA  RG+ R L              +PA P+ A  +V     PAS
Sbjct: 762 RSPAKRAEAASM--LAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSV----PPAS 815

Query: 49  PTSAAPCSTAPGP----IDCPRAEECRRK 73
           P  A P +  PGP     D P  E  R+K
Sbjct: 816 PARAPPATETPGPEKAATDLPAPETPRKK 844


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 24/89 (26%)

Query: 3   RSPSSAGGSISRRALAASPRGRARDL--------------QPAMPEPAPDAVGSCAAPAS 48
           RSP+    + S   LAA  RG+ R L              +PA P+ A  +V     PAS
Sbjct: 757 RSPAKRAEAASM--LAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSV----PPAS 810

Query: 49  PTSAAPCSTAPGP----IDCPRAEECRRK 73
           P  A P +  PGP     D P  E  R+K
Sbjct: 811 PARAPPATETPGPEKAATDLPAPETPRKK 839


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 3   RSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPGPI 62
           + P SA  +I+  A AA+    A       P  A  A  + AA A+P  AA  + AP P 
Sbjct: 490 KRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPA 549

Query: 63  DCP 65
             P
Sbjct: 550 AAP 552



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 6   SSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTA 58
           ++A  + +  A AA     A    PA+   A  A+ + AAPA   +AAP   A
Sbjct: 504 AAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAA 556


>gi|7705353 three prime repair exonuclease 1 isoform a [Homo
           sapiens]
          Length = 369

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 2   CRSPSSAGGSISRRALAASPRGRARDL-------------QPAMPEPAPDAVGSCAAPAS 48
           C SP SA G+       A P G  + L             QP + E    AV  CA  + 
Sbjct: 43  CSSPGSAAGTYPTMGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESP 102

Query: 49  PTSAAPCSTAPGP 61
           PTS  P  T P P
Sbjct: 103 PTSQGPPPTVPPP 115


>gi|226371735 iroquois homeobox 3 [Homo sapiens]
          Length = 501

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 33  PEPAPDAVGSCAAPASPTSAAPCSTAPGP 61
           P P P AV S + P+ P S  PC+ AP P
Sbjct: 312 PAPPPVAVASPSLPSPPVSLDPCAPAPAP 340


>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query: 2   CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDA 39
           CR    +GG+ SRRA  A PR   R   P  P  AP A
Sbjct: 213 CRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTAPAA 250


>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
           sapiens]
          Length = 224

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query: 2   CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDA 39
           CR    +GG+ SRRA  A PR   R   P  P  AP A
Sbjct: 142 CRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTAPAA 179


>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
          Length = 647

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 27  DLQPAMPEPAPD---AVGSCAAPASPTSAAPCSTAP-GP 61
           DL+P +P P P    AV     P +PT +APC   P GP
Sbjct: 313 DLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGP 351


>gi|20270357 zinc finger, AN1-type domain 2B [Homo sapiens]
          Length = 257

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 6   SSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAP 59
           S  G   SR  LAA  R +A      +P P+   + SC +P+  T+ +P  TAP
Sbjct: 135 SGEGHPTSRAGLAAISRAQAVASTSTVPSPS-QTMPSCTSPSRATTRSPSWTAP 187


>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 5   PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
           PS+   S  R ++ ++P        P +P P P    +  APA P   AP   APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380


>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 5   PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
           PS+   S  R ++ ++P        P +P P P    +  APA P   AP   APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380


>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 5   PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
           PS+   S  R ++ ++P        P +P P P    +  APA P   AP   APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380


>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 5   PSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGSCAAPASPTSAAPCSTAPG 60
           PS+   S  R ++ ++P        P +P P P    +  APA P   AP   APG
Sbjct: 332 PSALSTSSLRASMTSTP-------PPPVPPPPPPPATALQAPAVPPPPAPLQIAPG 380


>gi|9257222 forkhead box O1 [Homo sapiens]
          Length = 655

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 3   RSPSSAGGSISRRALAASPRGRARDLQ--------PAMPEPAPDAVGSCAAPASPTSAAP 54
           ++P S   +++  A AA+  G   D Q        PA P+P P    S   P  P +A P
Sbjct: 85  QAPGSVAAAVAAAAAAAATGGLCGDFQGPEAGCLHPAPPQPPPPGPLSQHPPVPPAAAGP 144

Query: 55  CSTAP 59
            +  P
Sbjct: 145 LAGQP 149


>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
          Length = 531

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 2   CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGS---CAAPASPTSAAPCSTA 58
           CRSP+  GG  SR +  A  RG      P + +P P+ + +          T   PC   
Sbjct: 115 CRSPAR-GGDCSRNSCLAWHRGAPAGETPPVCDPCPERIQNHPRTQLCEVHTDCWPCQPG 173

Query: 59  PGPIDCPR 66
            G   CPR
Sbjct: 174 TGAPTCPR 181


>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
          Length = 531

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 2   CRSPSSAGGSISRRALAASPRGRARDLQPAMPEPAPDAVGS---CAAPASPTSAAPCSTA 58
           CRSP+  GG  SR +  A  RG      P + +P P+ + +          T   PC   
Sbjct: 115 CRSPAR-GGDCSRNSCLAWHRGAPAGETPPVCDPCPERIQNHPRTQLCEVHTDCWPCQPG 173

Query: 59  PGPIDCPR 66
            G   CPR
Sbjct: 174 TGAPTCPR 181


>gi|30410035 late cornified envelope 5A [Homo sapiens]
          Length = 118

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 33 PEPAPDAVGSCAAPASPTSAAPCSTAPGPIDCPRAEECRRKHHGTGRQLRLRPGS 87
          P+  P     C+AP  P  ++ C ++ G         C   HH   + LR RP S
Sbjct: 30 PKCPPKCPPQCSAPCPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQS 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,107,699
Number of Sequences: 37866
Number of extensions: 298079
Number of successful extensions: 3624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 361
Number of HSP's that attempted gapping in prelim test: 2882
Number of HSP's gapped (non-prelim): 1038
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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