Guide to the Human Genome
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Search of human proteins with 239754149

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
         (274 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ...   570   e-163
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ...   570   e-163
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ...   570   e-163
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        39   0.005
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    39   0.006
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    39   0.006
gi|148806928 hypothetical protein LOC57482 [Homo sapiens]              37   0.014
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a...    37   0.024
gi|95147559 ankyrin repeat domain 43 [Homo sapiens]                    37   0.024
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]     36   0.032
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       36   0.032
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]            36   0.032
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]           36   0.032
gi|62177129 Nedd4 binding protein 3 [Homo sapiens]                     36   0.032
gi|30181233 leucine-rich repeats and calponin homology (CH) doma...    36   0.032
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]            36   0.041
gi|148762940 DVL-binding protein DAPLE [Homo sapiens]                  35   0.071
gi|163965366 nascent polypeptide-associated complex alpha subuni...    35   0.071
gi|7662162 ALEX2 protein [Homo sapiens]                                35   0.071
gi|29540562 ALEX2 protein [Homo sapiens]                               35   0.071
gi|88758580 cyclin L2 isoform A [Homo sapiens]                         34   0.12 
gi|195947369 junction-mediating and regulatory protein [Homo sap...    34   0.12 
gi|33239445 eukaryotic translation initiation factor 3, subunit ...    34   0.12 
gi|83367072 eukaryotic translation initiation factor 3, subunit ...    34   0.12 
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            34   0.12 
gi|239757419 PREDICTED: hypothetical protein [Homo sapiens]            34   0.16 
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]            34   0.16 
gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]            34   0.16 
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]            34   0.16 
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]            34   0.16 

>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
           sapiens]
          Length = 274

 Score =  570 bits (1469), Expect = e-163
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
           MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR
Sbjct: 1   MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60

Query: 61  GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
           GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ
Sbjct: 61  GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120

Query: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
           EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI
Sbjct: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180

Query: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
           PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV
Sbjct: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240

Query: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
           AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT
Sbjct: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274


>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
           sapiens]
          Length = 274

 Score =  570 bits (1469), Expect = e-163
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
           MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR
Sbjct: 1   MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60

Query: 61  GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
           GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ
Sbjct: 61  GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120

Query: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
           EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI
Sbjct: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180

Query: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
           PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV
Sbjct: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240

Query: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
           AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT
Sbjct: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274


>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
           sapiens]
          Length = 274

 Score =  570 bits (1469), Expect = e-163
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
           MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR
Sbjct: 1   MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60

Query: 61  GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
           GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ
Sbjct: 61  GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120

Query: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
           EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI
Sbjct: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180

Query: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
           PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV
Sbjct: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240

Query: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
           AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT
Sbjct: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 56/241 (23%), Positives = 90/241 (37%), Gaps = 50/241 (20%)

Query: 17   PTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKT---------EPGL-------- 59
            P+  S S  SPG    PR  +  + E    P P  LP+T          P L        
Sbjct: 1454 PSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQ 1513

Query: 60   --RGGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLS----EAAERKRCPEGRGRRDRPM 113
              R G + SV Q+  A +   +R+  GS+   + K S    E +E    P+ + +   P+
Sbjct: 1514 RERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPL 1573

Query: 114  EVRIQQ----QEERRQELEPQEGGPPGAAEEAD-PRLADSTGTGR-----------LCLL 157
              R +     + + +  L P+      + E  D PR A    +G              L 
Sbjct: 1574 RQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALP 1633

Query: 158  QKSLLGSPSR---PLPQQDAGIRLCIPTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESD 214
            ++S  GS S+   P P+  +       T    +  P  + R AR+ S   P P++   + 
Sbjct: 1634 RRSRSGSSSKGRGPSPEGSSS------TESSPEHPP--KSRTARRGSRSSPEPKTKSRTP 1685

Query: 215  P 215
            P
Sbjct: 1686 P 1686


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 35/102 (34%), Positives = 40/102 (39%), Gaps = 21/102 (20%)

Query: 6   PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
           PPC  P+ A P      +W  PG +PTP     +    G R  P      EPG R  R  
Sbjct: 401 PPCARPSGAGPAREGPAAW--PGGAPTPPHARPT----GRRQDP------EPGPRAPRGG 448

Query: 66  SVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRG 107
                W A SAA R    G  GG  A       R+R   GRG
Sbjct: 449 PASSGWHAGSAAGRGWDPG--GGSRA-------RRRAARGRG 481


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 35/102 (34%), Positives = 40/102 (39%), Gaps = 21/102 (20%)

Query: 6   PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
           PPC  P+ A P      +W  PG +PTP     +    G R  P      EPG R  R  
Sbjct: 401 PPCARPSGAGPAREGPAAW--PGGAPTPPHARPT----GRRQDP------EPGPRAPRGG 448

Query: 66  SVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRG 107
                W A SAA R    G  GG  A       R+R   GRG
Sbjct: 449 PASSGWHAGSAAGRGWDPG--GGSRA-------RRRAARGRG 481


>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
          Length = 1233

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 57  PGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK-LSEAA---ERKRCPEGRGRRDRP 112
           PG     ++   ++   E+   RR L+  A   E + L E A   ER+R  E  GR    
Sbjct: 298 PGWEDAERREREERERLEAEEERRRLQAQAQAEERRRLEEDARLEERRRQEEEEGRCAEE 357

Query: 113 MEVRIQQQEERRQELEPQEG---GPPGAAEEADPRLADSTGTGR 153
           ++ + +++ E  +ELE QE    GPP A EE        TG GR
Sbjct: 358 LKRQEEEEAEGWEELEQQEAEVQGPPEALEE--------TGEGR 393


>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
           [Homo sapiens]
          Length = 876

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 11  PTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQ 70
           P  A PP GL+   GS G    P  V  S       P  + + +T  G R  R+K  + +
Sbjct: 65  PPRASPPGGLAEPPGSAGPQAGPTVVPGSAT-----PMETGIAETPEGRRTSRRKRAKVE 119

Query: 71  WWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQ 130
           +     +     E      E + ++A + K+ P        P   +   +EE   E E  
Sbjct: 120 YREMDESLANLSEDEYYSEEERNAKAEKEKKLP--------PPPPQAPPEEENESEPEEP 171

Query: 131 EGGPPGAAEEADPRLADSTGTG 152
            G   G  +++     D   +G
Sbjct: 172 SGQAGGLQDDSSGGYGDGQASG 193


>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
          Length = 549

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 21/139 (15%)

Query: 117 IQQQEERRQELEPQEGGPPGAAEEAD-------PRLADSTGTGRLCLLQKSL-----LGS 164
           + +++ R  E EP   GPPGAA +         PR A + G   L  + + +     LG 
Sbjct: 78  VLRKKPRPPEPEPAPFGPPGAAAQPSKPTSTVLPRSASAPGAPPLVRVPRPVEPPGDLGL 137

Query: 165 PSRPLPQQDAGIRLCIPTAHKGQR-----MPLYRIRAARQFSLHD--PPPRSDMESDPCC 217
           P+   PQ   G     P    G+R     +P   +  A +    D  PPPR+  E+   C
Sbjct: 138 PTE--PQDTPGGPASEPAQPPGERSADPPLPALELAQATERPSADAAPPPRAPSEAASPC 195

Query: 218 SRGGAASAQRGEATRPRSQ 236
           S    A    G A  P  Q
Sbjct: 196 SDPPDAEPGPGAAKGPPQQ 214


>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
          Length = 498

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 75  SAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPM---EVRIQQQEERRQELEPQE 131
           +AA+     G  GGGE +  E  E+    + +G +D+P+   +V+  ++EE+  + EP +
Sbjct: 2   AAAAAAAPSGGGGGGEEERLE--EKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQ 59

Query: 132 GGPPGAAEEADPRLAD-STGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPTAHKGQRMP 190
                +AE A+   A+ S G+G    + ++      R    +D G     PT  +G    
Sbjct: 60  PSAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRK 119

Query: 191 LYRIRAARQFSLHD 204
           L + ++ R    +D
Sbjct: 120 LKQRKSGRSAGKYD 133


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 33   PRAVTASQVELGLRPG-PSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEA 91
            P+ V   QV     P  P  L  T P L G  K S   Q  +ES+ +    E SAGGG  
Sbjct: 1011 PQLVGRFQVTSSKEPAEPLPLQPTSPTLSGSPKPST-PQLTSESSDT----EDSAGGGPE 1065

Query: 92   KLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAAEEADP 143
                 AE  R  EG G            +EE     EPQ GG P       P
Sbjct: 1066 TREALAESDRAAEGLG---------AGVEEEGDDGKEPQVGGSPQPLSHPSP 1108


>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 9   GTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPK--TEPGLRGGRKKS 66
           G     +P  G+S + G+ G    P +      E    P PS  P+  TEP LR  R  S
Sbjct: 49  GRRAQRRPGPGVS-AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALR--RPSS 105

Query: 67  VRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQE 126
             +      ++S     G A G  A  S +++    P GR  R R  E  +  +E+R + 
Sbjct: 106 ADRPLAPGPSSSPGA--GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRL 163

Query: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLC 179
           L  +    P   E+A       TGT           G   R +    AG+R C
Sbjct: 164 LLEEGSAQPDDGEDAPRPGRKETGT---------QTGGDGRGVSDAGAGVRGC 207


>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
          Length = 364

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 9   GTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPK--TEPGLRGGRKKS 66
           G     +P  G+S + G+ G    P +      E    P PS  P+  TEP LR  R  S
Sbjct: 152 GRRAQRRPGPGVS-AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALR--RPSS 208

Query: 67  VRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQE 126
             +      ++S     G A G  A  S +++    P GR  R R  E  +  +E+R + 
Sbjct: 209 ADRPLAPGPSSSPGA--GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRL 266

Query: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLC 179
           L  +    P   E+A       TGT           G   R +    AG+R C
Sbjct: 267 LLEEGSAQPDDGEDAPRPGRKETGT---------QTGGDGRGVSDAGAGVRGC 310


>gi|62177129 Nedd4 binding protein 3 [Homo sapiens]
          Length = 544

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 49/251 (19%)

Query: 6   PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
           PP       +PP    FS  S          T  +++ GL       P T+         
Sbjct: 234 PPAVLSCLPEPPPPYEFSCSSAEEMGAVLPETCEELKRGLGDEDGSNPFTQV-------L 286

Query: 66  SVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERR- 124
             RQ+ W  +   R  +E        +L E  ++      R  R+  +++ + QQE+RR 
Sbjct: 287 EERQRLWL-AELKRLYVE--------RLHEVTQKAE----RSERNLQLQLFMAQQEQRRL 333

Query: 125 -QELEPQEG-----GPPGAAEEADP--------RLADSTGTGRLCLLQKSLLGSPSRPLP 170
            +EL  Q+G       PG   EADP        R      T  + LL++ L  + +  L 
Sbjct: 334 RKELRAQQGLAPEPRAPGTLPEADPSARPEEEARWEVCQKTAEISLLKQQLREAQAE-LA 392

Query: 171 QQDAGIRLCIPTAHKGQR-------MPLYRIRAARQFSLHDPPPRSD----MESDPCCSR 219
           Q+ A I   + T  +G R         L R+R A + SL +  PR +     E+D C SR
Sbjct: 393 QKLAEI-FSLKTQLRGSRAQAQAQDAELVRLREAVR-SLQEQAPREEAPGSCETDDCKSR 450

Query: 220 GGAASAQRGEA 230
           G    A   EA
Sbjct: 451 GLLGEAGGSEA 461


>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
           containing 4 [Homo sapiens]
          Length = 683

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 42/172 (24%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 79  RRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAA 138
           +R  E S G G+ + + ++ R+  P G  RR RP  +++ Q+ ERRQ+ +    G P   
Sbjct: 374 QRPPELSPGAGDRERAPSSRREE-PAGEERR-RPDTLQLWQERERRQQQQSGAWGAPRKD 431

Query: 139 EEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPTAHKGQRMPLYRIRAAR 198
               P L    G       Q    GSP     Q  A      P      + PL     A 
Sbjct: 432 SLLKPGLRAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAPAPASQEPL---PIAG 488

Query: 199 QFSLHDPPPRSDMESD-----PCCSRGGAASAQRGEATRPRSQSQLVAASDL 245
             +   P P   ++          S+ G+  +      RPR   Q+    DL
Sbjct: 489 PATAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRYPQVPDEKDL 540


>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 47  PGPSDLPK--TEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
           P PS  P+  TEP LR   + S  ++  A++ +S  ++ G A G  A  S ++E    P 
Sbjct: 87  PMPSSAPRGPTEPALR---RPSSAERPLAQAPSSSASV-GRAPGAMASPSRSSEATGKPR 142

Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGS 164
           GR  R R  E  +  +E+R + L       P   E+ +    D+   GR  +   +  G 
Sbjct: 143 GRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE----DAPRPGR--VETGTQTGG 196

Query: 165 PSRPLPQQDAGIRLC 179
             R +    AG+R C
Sbjct: 197 DGRGVSDAGAGVRGC 211


>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
          Length = 2028

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 42/167 (25%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 6    PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTA-----SQVELGLRPGPSDLPKTEPGLR 60
            PP   P  AQPP  LS   G P  +P P A  A     + +        +DL +   G  
Sbjct: 1763 PPSVAPRQAQPPQSLSL--GRPRQAPVPPASHAPASRSASLSRAFSLASADLLRAS-GPE 1819

Query: 61   GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCP---------EGRGRRDR 111
              +++S ++    E+   R T   +        S +  R+R P         +G G R R
Sbjct: 1820 ACKQESPQKLGAPEALGGRETGSHTLQSPAPPSSHSLARERTPLVGKAGSSCQGPGPRSR 1879

Query: 112  PMEVR----IQQQEERRQELEPQEGGPPGAAEEADPRLADSTGTGRL 154
            P++ R       +EER   L      P  A   A    A S    +L
Sbjct: 1880 PLDTRRFSLAPPKEERLAPLHQSATAPAIATAGAGAAAAGSGSNSQL 1926


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 6    PPCGTPT--SAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGG 62
            PP G PT  +A PP+      GSPGT P   A T   V      G   LP T P  +GG
Sbjct: 1305 PPKGAPTPPAATPPSPK----GSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGG 1359


>gi|7662162 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 6   PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
           P   TPT A  PTG +    SPGTS +PR            PG S   K  PG   G   
Sbjct: 221 PVPATPTGAAAPTGAA---ESPGTSGSPRTAVV--------PGTSAAKKATPGAHTGAIP 269

Query: 66  SVRQQWWAESAASRRTLEGSAGGGEAK 92
                  A      + +  S  GG+ K
Sbjct: 270 KATSATGAVPKGGGKGVTRSRNGGKGK 296


>gi|29540562 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 6   PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
           P   TPT A  PTG +    SPGTS +PR            PG S   K  PG   G   
Sbjct: 221 PVPATPTGAAAPTGAA---ESPGTSGSPRTAVV--------PGTSAAKKATPGAHTGAIP 269

Query: 66  SVRQQWWAESAASRRTLEGSAGGGEAK 92
                  A      + +  S  GG+ K
Sbjct: 270 KATSATGAVPKGGGKGVTRSRNGGKGK 296


>gi|88758580 cyclin L2 isoform A [Homo sapiens]
          Length = 520

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 25/121 (20%)

Query: 17  PTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKKSV--------- 67
           P G     G+ G SP P+ V + +   G +P P  +  T+  L G +K            
Sbjct: 317 PGGTQVLDGTSGFSPAPKLVESPKEGKGSKPSPLSVKNTKRRLEGAKKAKADSPVNGLPK 376

Query: 68  ----------RQQWWAESAA------SRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDR 111
                     R+Q ++ S +       R++  GS  GG    S +  R   P  +  R  
Sbjct: 377 GRESRSRSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRSRSDSPPRQAPRSA 436

Query: 112 P 112
           P
Sbjct: 437 P 437


>gi|195947369 junction-mediating and regulatory protein [Homo
           sapiens]
          Length = 988

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 34/205 (16%)

Query: 80  RTLEGSAGGGEA--KLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGA 137
           R   G+ GG EA    S+ +     P GRGR +      + +    R+     EGG P +
Sbjct: 59  REQAGARGGAEAGGAASDGSRGPGSPAGRGRPEATASATLVRSPGPRRSSAWAEGGSPRS 118

Query: 138 AEE--ADPRLADSTGTGRLCLLQKSLLGSP-------------------SRPLPQ--QDA 174
                 DPRL      G    L+  +   P                   +RP P+  Q +
Sbjct: 119 TRSLLGDPRLRSPGSKGAESRLRSPVRAKPIPGQKTSEADDAAGAAAAAARPAPREAQVS 178

Query: 175 GIRLCIPTAHKGQRMPLYRIRAARQFSL-----HDPPPRSDMESD-PCCSRGGAASAQRG 228
            +R+   +    + + +  +    +  L       PPP +++ES    CS  G  S Q  
Sbjct: 179 SVRIVSASGTVSEEIEVLEMVKEDEAPLALSDAEQPPPATELESPAEECSWAGLFSFQDL 238

Query: 229 EATRPRSQSQLVAASDLEPWTPHSP 253
            A     Q      S LEP  P  P
Sbjct: 239 RAVH---QQLCSVNSQLEPCLPVFP 260


>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 3   RGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGL-RPGPSDLPKTEPGLRG 61
           R  P    P +  PP         PG +P      AS  E+G+   GP    +TEP    
Sbjct: 16  RAEPGQQQPAAEPPPAEGLLRPAGPG-APEAAGTEASSEEVGIAEAGPESEVRTEPAAEA 74

Query: 62  GRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQE 121
                         AAS  +   S    E      AE     +G    +   + R ++ +
Sbjct: 75  -------------EAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGE---QARDERSD 118

Query: 122 ERRQELEPQEGGPPGAAEEADPRLADSTGTGRLC----------LLQKSLLGSPSRPLPQ 171
            R Q +    GG  G A EA+PR  ++                 + ++ LLG   +  PQ
Sbjct: 119 SRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQ 178

Query: 172 QDAGI 176
           +  GI
Sbjct: 179 EADGI 183


>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 3   RGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGL-RPGPSDLPKTEPGLRG 61
           R  P    P +  PP         PG +P      AS  E+G+   GP    +TEP    
Sbjct: 16  RAEPGQQQPAAEPPPAEGLLRPAGPG-APEAAGTEASSEEVGIAEAGPESEVRTEPAAEA 74

Query: 62  GRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQE 121
                         AAS  +   S    E      AE     +G    +   + R ++ +
Sbjct: 75  -------------EAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGE---QARDERSD 118

Query: 122 ERRQELEPQEGGPPGAAEEADPRLADSTGTGRLC----------LLQKSLLGSPSRPLPQ 171
            R Q +    GG  G A EA+PR  ++                 + ++ LLG   +  PQ
Sbjct: 119 SRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQ 178

Query: 172 QDAGI 176
           +  GI
Sbjct: 179 EADGI 183


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 25/110 (22%)

Query: 28  GTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAG 87
           G +P P+        L  RPG       EPG  GG  +                 EGS G
Sbjct: 9   GVAPGPQGPPEVPAPLAERPG-------EPGAAGGEAEGP---------------EGSEG 46

Query: 88  GGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGA 137
             EA    AA ++    G G  DR  E   +       E E +EG P GA
Sbjct: 47  AEEAPRGAAAVKEA---GGGGPDRGPEAEARGTRGAHGETEAEEGAPEGA 93



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 25  GSPGTSPTPRAVTASQVELGLRPGPSDLPKTEP-GLRGGRKKSVRQQWWAESAASRRTLE 83
           GS G    PR   A +   G   GP   P+ E  G RG   ++  ++   E A   +  E
Sbjct: 43  GSEGAEEAPRGAAAVKEAGG--GGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGE 100

Query: 84  GSAGGGEAK-LSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAAEEA 141
            ++G  + +  S     +  P G  +R+       ++QEE  Q  E  EG   G A ++
Sbjct: 101 ETSGAQQVEGASPGRGAQGEPRGEAQREPEDSAAPERQEEAEQRPEVPEGSASGEAGDS 159


>gi|239757419 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 164

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 36  VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
           V AS + LG  P P+ LP+  P   G R++ +R +W  E   S R    S  G   K
Sbjct: 106 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 162


>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 3   RGHPPCG--TPTSAQPPTG------LSFSWGSPGTSPTPRAVTASQVE--------LGLR 46
           RG P  G   P SA  P G      L+     PG +  PR     +           GL 
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180

Query: 47  PGPSDLPKTEPGLRGGRKKSV--RQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
           PG S   +   G +  R+     R  W    A SRR   G+  G      +A +      
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240

Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGG--PPGAAEE 140
           G+G+R    E  +      R  L    GG  PPG + E
Sbjct: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRE 278


>gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 36  VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
           V AS + LG  P P+ LP+  P   G R++ +R +W  E   S R    S  G   K
Sbjct: 139 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 195


>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 3   RGHPPCG--TPTSAQPPTG------LSFSWGSPGTSPTPRAVTASQVE--------LGLR 46
           RG P  G   P SA  P G      L+     PG +  PR     +           GL 
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180

Query: 47  PGPSDLPKTEPGLRGGRKKSV--RQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
           PG S   +   G +  R+     R  W    A SRR   G+  G      +A +      
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240

Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGG--PPGAAEE 140
           G+G+R    E  +      R  L    GG  PPG + E
Sbjct: 241 GKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRE 278


>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 3   RGHPPCG--TPTSAQPPTG------LSFSWGSPGTSPTPRAVTASQVE--------LGLR 46
           RG P  G   P SA  P G      L+     PG +  PR     +           GL 
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180

Query: 47  PGPSDLPKTEPGLRGGRKKSV--RQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
           PG S   +   G +  R+     R  W    A SRR   G+  G      +A +      
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240

Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGG--PPGAAEE 140
           G+G+R    E  +      R  L    GG  PPG + E
Sbjct: 241 GKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRE 278


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,579,595
Number of Sequences: 37866
Number of extensions: 859580
Number of successful extensions: 4591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 4279
Number of HSP's gapped (non-prelim): 583
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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