Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239754122

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754122 PREDICTED: hypothetical protein [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754122 PREDICTED: hypothetical protein [Homo sapiens]           234   1e-62
gi|239748628 PREDICTED: hypothetical protein XP_002346741 [Homo ...   234   1e-62
gi|239742655 PREDICTED: hypothetical protein XP_002342590 [Homo ...   234   1e-62
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             32   0.14 
gi|221219026 pleckstrin homology-like domain, family B, member 1...    28   1.2  
gi|221219024 pleckstrin homology-like domain, family B, member 1...    28   1.2  
gi|38424073 pleckstrin homology-like domain, family B, member 1 ...    28   1.2  
gi|17981708 twist homolog 2 [Homo sapiens]                             28   1.2  
gi|82830424 gon-4-like isoform a [Homo sapiens]                        28   1.2  
gi|82830428 gon-4-like isoform b [Homo sapiens]                        28   1.2  
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ...    28   1.2  
gi|126090663 zinc finger homeodomain 4 [Homo sapiens]                  28   2.0  
gi|7662230 ring finger protein 40 [Homo sapiens]                       28   2.0  
gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform...    27   2.7  
gi|47578107 delangin isoform B [Homo sapiens]                          27   2.7  
gi|47578105 delangin isoform A [Homo sapiens]                          27   2.7  
gi|94721259 solute carrier family 26, member 6 isoform 4 [Homo s...    27   3.5  
gi|94721253 solute carrier family 26, member 6 isoform 1 [Homo s...    27   3.5  
gi|148727255 microtubule associated serine/threonine kinase fami...    27   4.5  
gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens]                  27   4.5  
gi|134152686 receptor tyrosine kinase-like orphan receptor 1 iso...    26   5.9  
gi|134152725 receptor tyrosine kinase-like orphan receptor 1 iso...    26   5.9  
gi|4505257 moesin [Homo sapiens]                                       26   5.9  
gi|169209641 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|169210610 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|169210156 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|94721255 solute carrier family 26, member 6 isoform 2 [Homo s...    26   7.7  
gi|148746195 trichohyalin [Homo sapiens]                               26   7.7  
gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]      26   7.7  
gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform...    26   7.7  

>gi|239754122 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score =  234 bits (596), Expect = 1e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
           MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA
Sbjct: 1   MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60

Query: 61  KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
           KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI
Sbjct: 61  KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115


>gi|239748628 PREDICTED: hypothetical protein XP_002346741 [Homo
           sapiens]
          Length = 115

 Score =  234 bits (596), Expect = 1e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
           MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA
Sbjct: 1   MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60

Query: 61  KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
           KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI
Sbjct: 61  KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115


>gi|239742655 PREDICTED: hypothetical protein XP_002342590 [Homo
           sapiens]
          Length = 115

 Score =  234 bits (596), Expect = 1e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
           MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA
Sbjct: 1   MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60

Query: 61  KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
           KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI
Sbjct: 61  KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 36   RGERLRERTESSSDRGAC-----DTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQD 90
            R  RLRER  +S            TVN  A+EPV+T  +++   T  +S    S+   ++
Sbjct: 1436 RFRRLREREAASKSNEVVAVPTNGTVNNVAQEPVNTLGDISGNKTPDLSNQNSSDQANEE 1495

Query: 91   GITQGKSTESEENMTQDQALKNSDI 115
              T  +S++  E   +D+  KN+D+
Sbjct: 1496 WETASESSDFNERRERDEK-KNADL 1519


>gi|221219026 pleckstrin homology-like domain, family B, member 1
            isoform b [Homo sapiens]
          Length = 1319

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 41   RERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTES 100
            RER E      A DT++  + + ++T      I+TG  S C         G+  GK  E 
Sbjct: 1052 RERGEEGEH--AYDTLSLESSDSMETS-----ISTGGNSACSPDNMSSASGLDMGKIEEM 1104

Query: 101  EENMTQDQALKN 112
            E+ + +  A KN
Sbjct: 1105 EKMLKEAHAEKN 1116


>gi|221219024 pleckstrin homology-like domain, family B, member 1
            isoform a [Homo sapiens]
          Length = 1377

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 41   RERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTES 100
            RER E      A DT++  + + ++T      I+TG  S C         G+  GK  E 
Sbjct: 1099 RERGEEGEH--AYDTLSLESSDSMETS-----ISTGGNSACSPDNMSSASGLDMGKIEEM 1151

Query: 101  EENMTQDQALKN 112
            E+ + +  A KN
Sbjct: 1152 EKMLKEAHAEKN 1163


>gi|38424073 pleckstrin homology-like domain, family B, member 1
            isoform a [Homo sapiens]
          Length = 1377

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 41   RERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTES 100
            RER E      A DT++  + + ++T      I+TG  S C         G+  GK  E 
Sbjct: 1099 RERGEEGEH--AYDTLSLESSDSMETS-----ISTGGNSACSPDNMSSASGLDMGKIEEM 1151

Query: 101  EENMTQDQALKN 112
            E+ + +  A KN
Sbjct: 1152 EKMLKEAHAEKN 1163


>gi|17981708 twist homolog 2 [Homo sapiens]
          Length = 160

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 13 GWEGRYHFPRKKILEELEEQQILRGERLRERTESSSD 49
          G  G+   P  +  EEL+ Q+IL   R R+RT+S ++
Sbjct: 48 GKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNE 84


>gi|82830424 gon-4-like isoform a [Homo sapiens]
          Length = 2240

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 28   ELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINT-GFISICVVSEP 86
            +LEE   +  E  RE    S +R  CD +       +DTG    ++++ G ++   V + 
Sbjct: 1320 DLEEIVKMEPEEAREEISGSPERDICDDIKVEHAVELDTGAPSEELSSAGEVTKQTVLQK 1379

Query: 87   MGQDGITQGKSTESEENMTQDQALKNSDI 115
              ++  +Q   T S      D+    +D+
Sbjct: 1380 --EEERSQPTKTPSSSQEPPDEGTSGTDV 1406


>gi|82830428 gon-4-like isoform b [Homo sapiens]
          Length = 1529

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 28   ELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINT-GFISICVVSEP 86
            +LEE   +  E  RE    S +R  CD +       +DTG    ++++ G ++   V + 
Sbjct: 1320 DLEEIVKMEPEEAREEISGSPERDICDDIKVEHAVELDTGAPSEELSSAGEVTKQTVLQK 1379

Query: 87   MGQDGITQGKSTESEENMTQDQALKNSDI 115
              ++  +Q   T S      D+    +D+
Sbjct: 1380 --EEERSQPTKTPSSSQEPPDEGTSGTDV 1406


>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
           sapiens]
          Length = 1835

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 12  WGWEGRYHFPRKKILEELEEQQILR 36
           W WE  +H PRK  + ++E Q++L+
Sbjct: 264 WIWESLFHPPRKLGINDIEGQRVLQ 288


>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
          Length = 3571

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 50  RGACDTVNTNAKEPVD-TGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQ 108
           +G+  T +++A++P+  T +  A++N G +S  VV+ P+    ++   S  S+ + ++DQ
Sbjct: 383 KGSAST-SSSAEQPLGITQMPKAEVNLGGLSSLVVNTPITSVSLSHSSSESSKMSESKDQ 441


>gi|7662230 ring finger protein 40 [Homo sapiens]
          Length = 1001

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 20 FPRKKILEELEEQQILRGERLRERTESSSDRGACD 54
          F  KK+ E LE++Q    E LRER E    R A D
Sbjct: 54 FKNKKLAERLEQRQACEDE-LRERIEKLEKRQATD 87


>gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform b
           [Homo sapiens]
          Length = 779

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 45  ESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENM 104
           E S DRGAC T +    EPV T        T  +S   + + +  + + Q + +  +   
Sbjct: 602 EDSPDRGACSTPDMPQFEPVKT-------ETMTVSSLAIRKKIEPEAVLQTRVSAMDN-- 652

Query: 105 TQDQALKN 112
           TQ+ +LK+
Sbjct: 653 TQENSLKS 660


>gi|47578107 delangin isoform B [Homo sapiens]
          Length = 2697

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 21   PRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAK---EPVDTGVEVADINTGF 77
            P K+      E+++ R  + R+R +S SD  + D +N+  K   E     +E A+++ G 
Sbjct: 2484 PSKENESSDSEEEVSRPRKSRKRVDSDSDSDSEDDINSVMKCLPENSAPLIEFANVSQGI 2543

Query: 78   ISICVVSE 85
            + + ++ +
Sbjct: 2544 LLLLMLKQ 2551


>gi|47578105 delangin isoform A [Homo sapiens]
          Length = 2804

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 21   PRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAK---EPVDTGVEVADINTGF 77
            P K+      E+++ R  + R+R +S SD  + D +N+  K   E     +E A+++ G 
Sbjct: 2484 PSKENESSDSEEEVSRPRKSRKRVDSDSDSDSEDDINSVMKCLPENSAPLIEFANVSQGI 2543

Query: 78   ISICVVSE 85
            + + ++ +
Sbjct: 2544 LLLLMLKQ 2551


>gi|94721259 solute carrier family 26, member 6 isoform 4 [Homo
           sapiens]
          Length = 738

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 22  RKKIL---EELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFI 78
           +KK+L   E+L+ +Q+ + E+LR+  +++S +GA  ++N N          + D+ +  +
Sbjct: 555 KKKLLKKQEQLKLKQLQKEEKLRK--QAASPKGASVSINVN--------TSLEDMRSNNV 604

Query: 79  SICVVSEPMGQDGITQGKSTESEENMTQD 107
             C + +    D +    +   E++   D
Sbjct: 605 EDCKMMQVSSGDKMEDATANGQEDSKAPD 633


>gi|94721253 solute carrier family 26, member 6 isoform 1 [Homo
           sapiens]
          Length = 759

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 22  RKKIL---EELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFI 78
           +KK+L   E+L+ +Q+ + E+LR+  +++S +GA  ++N N          + D+ +  +
Sbjct: 576 KKKLLKKQEQLKLKQLQKEEKLRK--QAASPKGASVSINVN--------TSLEDMRSNNV 625

Query: 79  SICVVSEPMGQDGITQGKSTESEENMTQD 107
             C + +    D +    +   E++   D
Sbjct: 626 EDCKMMQVSSGDKMEDATANGQEDSKAPD 654


>gi|148727255 microtubule associated serine/threonine kinase family
            member 4 isoform a [Homo sapiens]
          Length = 2434

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 19   HFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTG 67
            H   +K   E+ ++++ R +  RE    S D   CD    +   PV+ G
Sbjct: 1271 HLCSRKHSLEVTQEEVQREQSQREAPLQSLDENVCDVPPLSRARPVEQG 1319


>gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens]
          Length = 352

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 15  EGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACD 54
           +G+   P++K ++   E+++     L E   S+SD   CD
Sbjct: 94  KGKIFIPKQKPVQTFTEEKVSLDPELEEALTSASDTELCD 133


>gi|134152686 receptor tyrosine kinase-like orphan receptor 1
           isoform 2 [Homo sapiens]
          Length = 393

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 29  LEEQQILRGERLRERTESSSDRGACDTVNTNAKEPV-DTGV 68
           L  +  + G RLR R   ++D G    V TN KE V  TGV
Sbjct: 105 LSFRSTIYGSRLRIRNLDTTDTGYFQCVATNGKEVVSSTGV 145


>gi|134152725 receptor tyrosine kinase-like orphan receptor 1
           isoform 1 [Homo sapiens]
          Length = 937

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 29  LEEQQILRGERLRERTESSSDRGACDTVNTNAKEPV-DTGV 68
           L  +  + G RLR R   ++D G    V TN KE V  TGV
Sbjct: 105 LSFRSTIYGSRLRIRNLDTTDTGYFQCVATNGKEVVSSTGV 145


>gi|4505257 moesin [Homo sapiens]
          Length = 577

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 22  RKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISIC 81
           +KK  E +E QQ  + + ++E  E +           +  EP +   +  D N    S  
Sbjct: 436 QKKESEAVEWQQ--KAQMVQEDLEKTRAELKTAMSTPHVAEPAENEQDEQDENGAEASAD 493

Query: 82  VVSEPMGQDGITQGKSTESEENMTQDQALK 111
           + ++ M +D   + ++TE+E+N    + LK
Sbjct: 494 LRADAMAKDRSEEERTTEAEKNERVQKHLK 523


>gi|169209641 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 26 LEELEEQQILRGERLRERTESSS 48
          + +LE ++I  GERLRER   +S
Sbjct: 18 VRDLERRRIASGERLRERLRGNS 40


>gi|169210610 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 26 LEELEEQQILRGERLRERTESSS 48
          + +LE ++I  GERLRER   +S
Sbjct: 18 VRDLERRRIASGERLRERLRGNS 40


>gi|169210156 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 26 LEELEEQQILRGERLRERTESSS 48
          + +LE ++I  GERLRER   +S
Sbjct: 18 VRDLERRRIASGERLRERLRGNS 40


>gi|94721255 solute carrier family 26, member 6 isoform 2 [Homo
           sapiens]
          Length = 758

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 22  RKKIL---EELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVE 69
           +KK+L   E+L+ +Q+ + E+LR++  S         VNT+ ++     VE
Sbjct: 576 KKKLLKKQEQLKLKQLQKEEKLRKQAASPKGASVSINVNTSLEDMRSNNVE 626


>gi|148746195 trichohyalin [Homo sapiens]
          Length = 1943

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 14   WEGRYHFPRKKILEELEEQQILRGERLRERTE 45
            WE +Y   RKK   + EE+Q+LR ER + R +
Sbjct: 1016 WERQY---RKKDELQQEEEQLLREEREKRRLQ 1044


>gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]
          Length = 68

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 81  CVVSEPMGQDGITQGKSTESEENMTQDQALK 111
           C    P G+  +  G   E EEN+T+  A K
Sbjct: 38  CCAQYPKGRSVVCSGFEKEEEENLTRKSASK 68


>gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform a
           [Homo sapiens]
          Length = 881

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 45  ESSSDRGACDTVNTNAKEPVDT 66
           E S DRGAC T +    EPV T
Sbjct: 676 EDSPDRGACSTPDMPQFEPVKT 697


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.127    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,169,491
Number of Sequences: 37866
Number of extensions: 164833
Number of successful extensions: 476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 41
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press