Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239754122
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754122 PREDICTED: hypothetical protein [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754122 PREDICTED: hypothetical protein [Homo sapiens] 234 1e-62
gi|239748628 PREDICTED: hypothetical protein XP_002346741 [Homo ... 234 1e-62
gi|239742655 PREDICTED: hypothetical protein XP_002342590 [Homo ... 234 1e-62
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 32 0.14
gi|221219026 pleckstrin homology-like domain, family B, member 1... 28 1.2
gi|221219024 pleckstrin homology-like domain, family B, member 1... 28 1.2
gi|38424073 pleckstrin homology-like domain, family B, member 1 ... 28 1.2
gi|17981708 twist homolog 2 [Homo sapiens] 28 1.2
gi|82830424 gon-4-like isoform a [Homo sapiens] 28 1.2
gi|82830428 gon-4-like isoform b [Homo sapiens] 28 1.2
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 28 1.2
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 28 2.0
gi|7662230 ring finger protein 40 [Homo sapiens] 28 2.0
gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform... 27 2.7
gi|47578107 delangin isoform B [Homo sapiens] 27 2.7
gi|47578105 delangin isoform A [Homo sapiens] 27 2.7
gi|94721259 solute carrier family 26, member 6 isoform 4 [Homo s... 27 3.5
gi|94721253 solute carrier family 26, member 6 isoform 1 [Homo s... 27 3.5
gi|148727255 microtubule associated serine/threonine kinase fami... 27 4.5
gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens] 27 4.5
gi|134152686 receptor tyrosine kinase-like orphan receptor 1 iso... 26 5.9
gi|134152725 receptor tyrosine kinase-like orphan receptor 1 iso... 26 5.9
gi|4505257 moesin [Homo sapiens] 26 5.9
gi|169209641 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|169210610 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|169210156 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|94721255 solute carrier family 26, member 6 isoform 2 [Homo s... 26 7.7
gi|148746195 trichohyalin [Homo sapiens] 26 7.7
gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens] 26 7.7
gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform... 26 7.7
>gi|239754122 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 234 bits (596), Expect = 1e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA
Sbjct: 1 MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
Query: 61 KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI
Sbjct: 61 KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
>gi|239748628 PREDICTED: hypothetical protein XP_002346741 [Homo
sapiens]
Length = 115
Score = 234 bits (596), Expect = 1e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA
Sbjct: 1 MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
Query: 61 KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI
Sbjct: 61 KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
>gi|239742655 PREDICTED: hypothetical protein XP_002342590 [Homo
sapiens]
Length = 115
Score = 234 bits (596), Expect = 1e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA
Sbjct: 1 MANSQLSGLSNWGWEGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNA 60
Query: 61 KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI
Sbjct: 61 KEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQALKNSDI 115
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 36 RGERLRERTESSSDRGAC-----DTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQD 90
R RLRER +S TVN A+EPV+T +++ T +S S+ ++
Sbjct: 1436 RFRRLREREAASKSNEVVAVPTNGTVNNVAQEPVNTLGDISGNKTPDLSNQNSSDQANEE 1495
Query: 91 GITQGKSTESEENMTQDQALKNSDI 115
T +S++ E +D+ KN+D+
Sbjct: 1496 WETASESSDFNERRERDEK-KNADL 1519
>gi|221219026 pleckstrin homology-like domain, family B, member 1
isoform b [Homo sapiens]
Length = 1319
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 41 RERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTES 100
RER E A DT++ + + ++T I+TG S C G+ GK E
Sbjct: 1052 RERGEEGEH--AYDTLSLESSDSMETS-----ISTGGNSACSPDNMSSASGLDMGKIEEM 1104
Query: 101 EENMTQDQALKN 112
E+ + + A KN
Sbjct: 1105 EKMLKEAHAEKN 1116
>gi|221219024 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 41 RERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTES 100
RER E A DT++ + + ++T I+TG S C G+ GK E
Sbjct: 1099 RERGEEGEH--AYDTLSLESSDSMETS-----ISTGGNSACSPDNMSSASGLDMGKIEEM 1151
Query: 101 EENMTQDQALKN 112
E+ + + A KN
Sbjct: 1152 EKMLKEAHAEKN 1163
>gi|38424073 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 41 RERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTES 100
RER E A DT++ + + ++T I+TG S C G+ GK E
Sbjct: 1099 RERGEEGEH--AYDTLSLESSDSMETS-----ISTGGNSACSPDNMSSASGLDMGKIEEM 1151
Query: 101 EENMTQDQALKN 112
E+ + + A KN
Sbjct: 1152 EKMLKEAHAEKN 1163
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 GWEGRYHFPRKKILEELEEQQILRGERLRERTESSSD 49
G G+ P + EEL+ Q+IL R R+RT+S ++
Sbjct: 48 GKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNE 84
>gi|82830424 gon-4-like isoform a [Homo sapiens]
Length = 2240
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 28 ELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINT-GFISICVVSEP 86
+LEE + E RE S +R CD + +DTG ++++ G ++ V +
Sbjct: 1320 DLEEIVKMEPEEAREEISGSPERDICDDIKVEHAVELDTGAPSEELSSAGEVTKQTVLQK 1379
Query: 87 MGQDGITQGKSTESEENMTQDQALKNSDI 115
++ +Q T S D+ +D+
Sbjct: 1380 --EEERSQPTKTPSSSQEPPDEGTSGTDV 1406
>gi|82830428 gon-4-like isoform b [Homo sapiens]
Length = 1529
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 28 ELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINT-GFISICVVSEP 86
+LEE + E RE S +R CD + +DTG ++++ G ++ V +
Sbjct: 1320 DLEEIVKMEPEEAREEISGSPERDICDDIKVEHAVELDTGAPSEELSSAGEVTKQTVLQK 1379
Query: 87 MGQDGITQGKSTESEENMTQDQALKNSDI 115
++ +Q T S D+ +D+
Sbjct: 1380 --EEERSQPTKTPSSSQEPPDEGTSGTDV 1406
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 12 WGWEGRYHFPRKKILEELEEQQILR 36
W WE +H PRK + ++E Q++L+
Sbjct: 264 WIWESLFHPPRKLGINDIEGQRVLQ 288
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 50 RGACDTVNTNAKEPVD-TGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENMTQDQ 108
+G+ T +++A++P+ T + A++N G +S VV+ P+ ++ S S+ + ++DQ
Sbjct: 383 KGSAST-SSSAEQPLGITQMPKAEVNLGGLSSLVVNTPITSVSLSHSSSESSKMSESKDQ 441
>gi|7662230 ring finger protein 40 [Homo sapiens]
Length = 1001
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 20 FPRKKILEELEEQQILRGERLRERTESSSDRGACD 54
F KK+ E LE++Q E LRER E R A D
Sbjct: 54 FKNKKLAERLEQRQACEDE-LRERIEKLEKRQATD 87
>gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform b
[Homo sapiens]
Length = 779
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 45 ESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISICVVSEPMGQDGITQGKSTESEENM 104
E S DRGAC T + EPV T T +S + + + + + Q + + +
Sbjct: 602 EDSPDRGACSTPDMPQFEPVKT-------ETMTVSSLAIRKKIEPEAVLQTRVSAMDN-- 652
Query: 105 TQDQALKN 112
TQ+ +LK+
Sbjct: 653 TQENSLKS 660
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 21 PRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAK---EPVDTGVEVADINTGF 77
P K+ E+++ R + R+R +S SD + D +N+ K E +E A+++ G
Sbjct: 2484 PSKENESSDSEEEVSRPRKSRKRVDSDSDSDSEDDINSVMKCLPENSAPLIEFANVSQGI 2543
Query: 78 ISICVVSE 85
+ + ++ +
Sbjct: 2544 LLLLMLKQ 2551
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 21 PRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAK---EPVDTGVEVADINTGF 77
P K+ E+++ R + R+R +S SD + D +N+ K E +E A+++ G
Sbjct: 2484 PSKENESSDSEEEVSRPRKSRKRVDSDSDSDSEDDINSVMKCLPENSAPLIEFANVSQGI 2543
Query: 78 ISICVVSE 85
+ + ++ +
Sbjct: 2544 LLLLMLKQ 2551
>gi|94721259 solute carrier family 26, member 6 isoform 4 [Homo
sapiens]
Length = 738
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 22 RKKIL---EELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFI 78
+KK+L E+L+ +Q+ + E+LR+ +++S +GA ++N N + D+ + +
Sbjct: 555 KKKLLKKQEQLKLKQLQKEEKLRK--QAASPKGASVSINVN--------TSLEDMRSNNV 604
Query: 79 SICVVSEPMGQDGITQGKSTESEENMTQD 107
C + + D + + E++ D
Sbjct: 605 EDCKMMQVSSGDKMEDATANGQEDSKAPD 633
>gi|94721253 solute carrier family 26, member 6 isoform 1 [Homo
sapiens]
Length = 759
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 22 RKKIL---EELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFI 78
+KK+L E+L+ +Q+ + E+LR+ +++S +GA ++N N + D+ + +
Sbjct: 576 KKKLLKKQEQLKLKQLQKEEKLRK--QAASPKGASVSINVN--------TSLEDMRSNNV 625
Query: 79 SICVVSEPMGQDGITQGKSTESEENMTQD 107
C + + D + + E++ D
Sbjct: 626 EDCKMMQVSSGDKMEDATANGQEDSKAPD 654
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 19 HFPRKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTG 67
H +K E+ ++++ R + RE S D CD + PV+ G
Sbjct: 1271 HLCSRKHSLEVTQEEVQREQSQREAPLQSLDENVCDVPPLSRARPVEQG 1319
>gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens]
Length = 352
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 15 EGRYHFPRKKILEELEEQQILRGERLRERTESSSDRGACD 54
+G+ P++K ++ E+++ L E S+SD CD
Sbjct: 94 KGKIFIPKQKPVQTFTEEKVSLDPELEEALTSASDTELCD 133
>gi|134152686 receptor tyrosine kinase-like orphan receptor 1
isoform 2 [Homo sapiens]
Length = 393
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 29 LEEQQILRGERLRERTESSSDRGACDTVNTNAKEPV-DTGV 68
L + + G RLR R ++D G V TN KE V TGV
Sbjct: 105 LSFRSTIYGSRLRIRNLDTTDTGYFQCVATNGKEVVSSTGV 145
>gi|134152725 receptor tyrosine kinase-like orphan receptor 1
isoform 1 [Homo sapiens]
Length = 937
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 29 LEEQQILRGERLRERTESSSDRGACDTVNTNAKEPV-DTGV 68
L + + G RLR R ++D G V TN KE V TGV
Sbjct: 105 LSFRSTIYGSRLRIRNLDTTDTGYFQCVATNGKEVVSSTGV 145
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 22 RKKILEELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVEVADINTGFISIC 81
+KK E +E QQ + + ++E E + + EP + + D N S
Sbjct: 436 QKKESEAVEWQQ--KAQMVQEDLEKTRAELKTAMSTPHVAEPAENEQDEQDENGAEASAD 493
Query: 82 VVSEPMGQDGITQGKSTESEENMTQDQALK 111
+ ++ M +D + ++TE+E+N + LK
Sbjct: 494 LRADAMAKDRSEEERTTEAEKNERVQKHLK 523
>gi|169209641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 26 LEELEEQQILRGERLRERTESSS 48
+ +LE ++I GERLRER +S
Sbjct: 18 VRDLERRRIASGERLRERLRGNS 40
>gi|169210610 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 26 LEELEEQQILRGERLRERTESSS 48
+ +LE ++I GERLRER +S
Sbjct: 18 VRDLERRRIASGERLRERLRGNS 40
>gi|169210156 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 26 LEELEEQQILRGERLRERTESSS 48
+ +LE ++I GERLRER +S
Sbjct: 18 VRDLERRRIASGERLRERLRGNS 40
>gi|94721255 solute carrier family 26, member 6 isoform 2 [Homo
sapiens]
Length = 758
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 22 RKKIL---EELEEQQILRGERLRERTESSSDRGACDTVNTNAKEPVDTGVE 69
+KK+L E+L+ +Q+ + E+LR++ S VNT+ ++ VE
Sbjct: 576 KKKLLKKQEQLKLKQLQKEEKLRKQAASPKGASVSINVNTSLEDMRSNNVE 626
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 14 WEGRYHFPRKKILEELEEQQILRGERLRERTE 45
WE +Y RKK + EE+Q+LR ER + R +
Sbjct: 1016 WERQY---RKKDELQQEEEQLLREEREKRRLQ 1044
>gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]
Length = 68
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 81 CVVSEPMGQDGITQGKSTESEENMTQDQALK 111
C P G+ + G E EEN+T+ A K
Sbjct: 38 CCAQYPKGRSVVCSGFEKEEEENLTRKSASK 68
>gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform a
[Homo sapiens]
Length = 881
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 45 ESSSDRGACDTVNTNAKEPVDT 66
E S DRGAC T + EPV T
Sbjct: 676 EDSPDRGACSTPDMPQFEPVKT 697
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,169,491
Number of Sequences: 37866
Number of extensions: 164833
Number of successful extensions: 476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 41
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.