Guide to the Human Genome
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Name: LOC100132779 Sequence: fasta or formatted (202aa) NCBI GI: 169209641
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {202aa} PREDICTED: hypothetical protein
alt mRNA {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          5           1
 C cysteine            0.0          0           0
 D aspartate          13.4         27           1
 E glutamate           6.4         13           1
 F phenylalanine       0.0          0           0
 G glycine            10.9         22           2
 H histidine           0.0          0           0
 I isoleucine          2.0          4           1
 K lysine              0.5          1           1
 L leucine            20.8         42           3
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             0.5          1           1
 Q glutamine           0.0          0           0
 R arginine           23.8         48           3
 S serine              1.0          2           1
 T threonine           4.5          9           1
 V valine             12.9         26           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132779          1.000   PREDICTED: hypothetical protein 
LOC100132779          1.000   PREDICTED: hypothetical protein 
ZC3H13                0.034   zinc finger CCCH-type containing 13 
PRPF38B               0.031   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100134067          0.025   PREDICTED: hypothetical protein 
RBM25                 0.022   RNA binding motif protein 25 
LOC100286959          0.022   PREDICTED: hypothetical protein XP_002343921 
DIDO1                 0.022   death inducer-obliterator 1 isoform c 
LOC100131202          0.022   PREDICTED: hypothetical protein 
RDBP                  0.020   RD RNA-binding protein 
KIAA0182              0.020   genetic suppressor element 1 isoform 2 
KIAA0182              0.020   genetic suppressor element 1 isoform 1 
LOC100170229          0.020   hypothetical protein LOC100170229 
CROCC                 0.020   ciliary rootlet coiled-coil 
SLTM                  0.020   modulator of estrogen induced transcription isoform ...
SLTM                  0.020   modulator of estrogen induced transcription isoform ...
SNRNP70               0.020   U1 small nuclear ribonucleoprotein 70 kDa 
LOC100131202          0.017   PREDICTED: hypothetical protein 
LOC100288068          0.014   PREDICTED: hypothetical protein 
ZBED3                 0.014   zinc finger, BED-type containing 3 
TCHH                  0.014   trichohyalin 
TMCC3                 0.014   transmembrane and coiled-coil domain family 3 [Homo...
MED4                  0.014   mediator complex subunit 4 
LOC100133599          0.011   PREDICTED: hypothetical protein 
LOC100288837          0.011   PREDICTED: hypothetical protein XP_002343931, parti...
TRAF3IP1              0.011   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.011   TNF receptor-associated factor 3 interacting protein...
CALCOCO1              0.011   coiled-coil transcriptional coactivator isoform 2 [...
CALCOCO1              0.011   coiled-coil transcriptional coactivator isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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