Guide to the Human Genome
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Name: MTCP1NB Sequence: fasta or formatted (68aa) NCBI GI: 66346713
Description:

mature T-cell proliferation 1 neighbor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          5           1
 C cysteine           10.3          7           2
 D aspartate           1.5          1           1
 E glutamate          11.8          8           4
 F phenylalanine       1.5          1           1
 G glycine             2.9          2           1
 H histidine           0.0          0           0
 I isoleucine          2.9          2           1
 K lysine             13.2          9           1
 L leucine             4.4          3           1
 M methionine          2.9          2           1
 N asparagine          2.9          2           1
 P proline             4.4          3           1
 Q glutamine          11.8          8           1
 R arginine            4.4          3           1
 S serine              8.8          6           1
 T threonine           1.5          1           1
 V valine              4.4          3           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mature T-cell proliferation 1 neighbor 
C8B                   0.075   complement component 8, beta polypeptide preproprotei...
LOC651959             0.058   PREDICTED: FSHD region gene 2-like 
LOC651959             0.058   PREDICTED: FSHD region gene 2-like 
PSMC3IP               0.050   PSMC3 interacting protein isoform 1 
FRG2B                 0.050   FSHD region gene 2 family, member B 
SPOCK2                0.025   sparc/osteonectin, cwcv and kazal-like domains proteo...
THBS1                 0.017   thrombospondin 1 precursor 
PROM2                 0.017   prominin 2 
CHCHD7                0.017   coiled-coil-helix-coiled-coil-helix domain containin...
CHCHD7                0.017   coiled-coil-helix-coiled-coil-helix domain containin...
CHCHD7                0.017   coiled-coil-helix-coiled-coil-helix domain containin...
TRIM39                0.008   tripartite motif-containing 39 isoform 2 
TRIM39                0.008   tripartite motif-containing 39 isoform 1 
KRTAP10-8             0.008   keratin associated protein 10-8 
HABP2                 0.008   hyaluronan binding protein 2 preproprotein 
SPOCK1                0.008   sparc/osteonectin, cwcv and kazal-like domains proteo...
LOC286528             0.008   PREDICTED: similar to Ssu72 RNA polymerase II CTD p...
LOC100293566          0.008   PREDICTED: hypothetical protein 
LOC286528             0.008   PREDICTED: similar to Ssu72 RNA polymerase II CTD ph...
LOC100289841          0.008   PREDICTED: hypothetical protein XP_002346741 
LOC286528             0.008   PREDICTED: similar to Ssu72 RNA polymerase II CTD ph...
LOC100288062          0.008   PREDICTED: hypothetical protein XP_002342590 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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