Guide to the Human Genome
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Name: SLC26A6 Sequence: fasta or formatted (759aa) NCBI GI: 94721253
Description:

solute carrier family 26, member 6 isoform 1

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [758aa] solute carrier family 26, member 6 isoform 2
alt prot [740aa] solute carrier family 26, member 6 isoform 3
alt prot [738aa] solute carrier family 26, member 6 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         65           3
 C cysteine            1.1          8           1
 D aspartate           4.5         34           1
 E glutamate           3.7         28           2
 F phenylalanine       4.5         34           2
 G glycine             6.7         51           2
 H histidine           2.5         19           1
 I isoleucine          4.3         33           3
 K lysine              4.5         34           3
 L leucine            14.1        107           3
 M methionine          2.4         18           2
 N asparagine          2.5         19           2
 P proline             4.5         34           2
 Q glutamine           4.9         37           3
 R arginine            4.3         33           3
 S serine              8.4         64           2
 T threonine           4.3         33           2
 V valine             10.7         81           3
 W tryptophan          1.1          8           1
 Y tyrosine            2.5         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 26, member 6 isoform 1 
SLC26A6               0.995   solute carrier family 26, member 6 isoform 2 
SLC26A6               0.973   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.951   solute carrier family 26, member 6 isoform 3 
SLC26A5               0.368   prestin isoform a 
SLC26A4               0.361   pendrin 
SLC26A5               0.354   prestin isoform b 
SLC26A9               0.330   solute carrier family 26, member 9 isoform a 
SLC26A9               0.330   solute carrier family 26, member 9 isoform b 
SLC26A3               0.326   solute carrier family 26, member 3 
SLC26A5               0.292   prestin isoform c 
SLC26A1               0.262   solute carrier family 26, member 1 isoform a 
SLC26A1               0.262   solute carrier family 26, member 1 isoform a 
SLC26A2               0.261   solute carrier family 26 member 2 
SLC26A8               0.240   solute carrier family 26, member 8 isoform a 
SLC26A7               0.194   solute carrier family 26, member 7 isoform a 
SLC26A7               0.194   solute carrier family 26, member 7 isoform b 
SLC26A10              0.175   solute carrier family 26, member 10 
SLC26A9               0.161   solute carrier family 26, member 9 isoform c 
SLC26A5               0.153   prestin isoform d 
SLC26A8               0.144   solute carrier family 26, member 8 isoform b 
SLC26A11              0.138   solute carrier family 26, member 11 
SLC26A1               0.062   solute carrier family 26, member 1 isoform b 
C12orf45              0.007   hypothetical protein LOC121053 
NBEA                  0.006   neurobeachin 
CIR1                  0.005   CBF1 interacting corepressor 
SF3B2                 0.005   splicing factor 3B subunit 2 
ATP8A1                0.005   ATPase, aminophospholipid transporter (APLT), class...
ATP8A1                0.005   ATPase, aminophospholipid transporter (APLT), class ...
SCRIB                 0.005   scribble isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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