Guide to the Human Genome
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Name: LOC100288062 Sequence: fasta or formatted (115aa) NCBI GI: 239742655
Description:

PREDICTED: hypothetical protein XP_002342590

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          5           1
 C cysteine            1.7          2           1
 D aspartate           6.1          7           1
 E glutamate          12.2         14           2
 F phenylalanine       1.7          2           1
 G glycine             8.7         10           1
 H histidine           0.9          1           1
 I isoleucine          6.1          7           1
 K lysine              4.3          5           2
 L leucine             6.1          7           1
 M methionine          2.6          3           1
 N asparagine          6.1          7           1
 P proline             2.6          3           1
 Q glutamine           6.1          7           2
 R arginine            6.1          7           1
 S serine              9.6         11           3
 T threonine           7.0          8           1
 V valine              5.2          6           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342590 
LOC100293566          1.000   PREDICTED: hypothetical protein 
LOC100289841          1.000   PREDICTED: hypothetical protein XP_002346741 
BAT2D1                0.033   HBxAg transactivated protein 2 
PHLDB1                0.014   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.014   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.014   pleckstrin homology-like domain, family B, member 1 ...
TWIST2                0.014   twist homolog 2 
GON4L                 0.014   gon-4-like isoform a 
GON4L                 0.014   gon-4-like isoform b 
ARID2                 0.014   AT rich interactive domain 2 (ARID, RFX-like) 
ZFHX4                 0.014   zinc finger homeodomain 4 
RNF40                 0.014   ring finger protein 40 
EPB41L1               0.010   erythrocyte membrane protein band 4.1-like 1 isoform...
NIPBL                 0.010   delangin isoform B 
NIPBL                 0.010   delangin isoform A 
SLC26A6               0.010   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.010   solute carrier family 26, member 6 isoform 1 
MAST4                 0.010   microtubule associated serine/threonine kinase fami...
TMOD3                 0.010   tropomodulin 3 (ubiquitous) 
ROR1                  0.005   receptor tyrosine kinase-like orphan receptor 1 iso...
ROR1                  0.005   receptor tyrosine kinase-like orphan receptor 1 iso...
MSN                   0.005   moesin 
LOC100132779          0.005   PREDICTED: hypothetical protein 
LOC100132779          0.005   PREDICTED: hypothetical protein 
LOC100132779          0.005   PREDICTED: hypothetical protein 
SLC26A6               0.005   solute carrier family 26, member 6 isoform 2 
TCHH                  0.005   trichohyalin 
MTCP1NB               0.005   mature T-cell proliferation 1 neighbor 
EPB41L1               0.005   erythrocyte membrane protein band 4.1-like 1 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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