Search of human proteins with 239753887

Search of human proteins with 239753887

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]           271   1e-73
gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]            60   6e-10
gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]            60   6e-10
gi|239508694 PREDICTED: hypothetical protein [Homo sapiens]            60   6e-10
gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo ...    59   8e-10
gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo ...    57   4e-09
gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo ...    57   4e-09
gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo ...    56   7e-09
gi|239757861 PREDICTED: similar to armadillo repeat containing, ...    38   0.002
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    36   0.007
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    36   0.007
gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo ...    35   0.012
gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo ...    35   0.012
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ...    35   0.020
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ...    35   0.020
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ...    35   0.020
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ...    35   0.020
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s...    35   0.020
gi|124430752 kinesin family member 26B [Homo sapiens]                  35   0.020
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              34   0.027
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               34   0.027
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          34   0.035
gi|171906567 peripheral benzodiazepine receptor-associated prote...    33   0.059
gi|171906559 peripheral benzodiazepine receptor-associated prote...    33   0.059
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ...    33   0.077
gi|239747614 PREDICTED: similar to Putative uncharacterized prot...    32   0.13 
gi|239757101 PREDICTED: hypothetical protein [Homo sapiens]            32   0.17 
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]        32   0.17 
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]        32   0.17 
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    31   0.22 

>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  271 bits (692), Expect = 1e-73
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE 60
           MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE
Sbjct: 1   MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE 60

Query: 61  ATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAGRLQ 120
           ATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAGRLQ
Sbjct: 61  ATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAGRLQ 120

Query: 121 VGLERPT 127
           VGLERPT
Sbjct: 121 VGLERPT 127


>gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 33/70 (47%), Positives = 40/70 (57%), Gaps = 13/70 (18%)

Query: 1   MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGP-----------RGAHQPEAVWGLQ 49
           M WACRG REAGA PG+A   T+WA RGR+EA A P           RG  + E   GL+
Sbjct: 130 MIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEEL--GLE 187

Query: 50  MPSEGRSWPG 59
            P+ G + PG
Sbjct: 188 RPTGGSAGPG 197



 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 59/198 (29%), Positives = 71/198 (35%), Gaps = 74/198 (37%)

Query: 2   TWACRGRREAGA--GPGEADFRTIWACRGRQEAQAGP-----------------RGAHQP 42
           +WACR  +EAGA    G ++ R  WA R R EA+ GP                   +   
Sbjct: 14  SWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESA 73

Query: 43  EAV----WGLQMPSEGRSW-----------------------PGEATVRPELGLGSLASG 75
           EA     WGL  P  G +W                       PGEA  RPELGLG +   
Sbjct: 74  EAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMI-W 132

Query: 76  SCGPTRAAGS----------WAGAESKDVVGRP-----------------ESGLETQPGG 108
           +C   R AG+          WA    ++    P                 E GLE   GG
Sbjct: 133 ACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGG 192

Query: 109 RAGPGEDAGRLQVGLERP 126
            AGPG  A     G ERP
Sbjct: 193 SAGPGAHAKEQTPGRERP 210


>gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 33/70 (47%), Positives = 40/70 (57%), Gaps = 13/70 (18%)

Query: 1   MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGP-----------RGAHQPEAVWGLQ 49
           M WACRG REAGA PG+A   T+WA RGR+EA A P           RG  + E   GL+
Sbjct: 130 MIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEEL--GLE 187

Query: 50  MPSEGRSWPG 59
            P+ G + PG
Sbjct: 188 RPTGGSAGPG 197



 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 59/198 (29%), Positives = 71/198 (35%), Gaps = 74/198 (37%)

Query: 2   TWACRGRREAGA--GPGEADFRTIWACRGRQEAQAGP-----------------RGAHQP 42
           +WACR  +EAGA    G ++ R  WA R R EA+ GP                   +   
Sbjct: 14  SWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESA 73

Query: 43  EAV----WGLQMPSEGRSW-----------------------PGEATVRPELGLGSLASG 75
           EA     WGL  P  G +W                       PGEA  RPELGLG +   
Sbjct: 74  EAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMI-W 132

Query: 76  SCGPTRAAGS----------WAGAESKDVVGRP-----------------ESGLETQPGG 108
           +C   R AG+          WA    ++    P                 E GLE   GG
Sbjct: 133 ACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGG 192

Query: 109 RAGPGEDAGRLQVGLERP 126
            AGPG  A     G ERP
Sbjct: 193 SAGPGAHAKEQTPGRERP 210


>gi|239508694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 149

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 48/131 (36%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 2   TWACRGRREAGA----GPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSW 57
           +W CR  R+AGA    G  EA     W  R   EA+AGP  A + +     +      S 
Sbjct: 18  SWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFETQEAGPAKADWRSSSA 77

Query: 58  PGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLETQPGGRAGPGEDA 116
           P EA    + GLG        P RA  SWAG   K+  GR E  GLE    G   PGE  
Sbjct: 78  PEEAAKSQKRGLGR-------PPRAM-SWAG--PKEATGRQEELGLERLTRGSFAPGEAV 127

Query: 117 GRLQVGLERPT 127
            R ++G  RPT
Sbjct: 128 ERTELGPGRPT 138



 Score = 36.2 bits (82), Expect = 0.007
 Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 26/105 (24%)

Query: 2   TWA----CRGRREAG---------AGPGEADFRTIWACRGRQEAQ-------------AG 35
           +WA    C    EAG         AGP +AD+R+  A     ++Q             AG
Sbjct: 41  SWAWRVRCEAEAEAGPVQAFETQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAG 100

Query: 36  PRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPT 80
           P+ A   +   GL+  + G   PGEA  R ELG G     S  PT
Sbjct: 101 PKEATGRQEELGLERLTRGSFAPGEAVERTELGPGRPTCCSSRPT 145


>gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo
           sapiens]
          Length = 149

 Score = 59.3 bits (142), Expect = 8e-10
 Identities = 48/131 (36%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 2   TWACRGRREAGA----GPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSW 57
           +W CR  R+AGA    G  EA     W  R   EA+AGP  A + +     +      S 
Sbjct: 18  SWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFERQEAGPAKADWRSSSA 77

Query: 58  PGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLETQPGGRAGPGEDA 116
           P EA    + GLG        P RA  SWAG   K+  GR E  GLE    G   PGE  
Sbjct: 78  PEEAAKTQKRGLGR-------PPRAM-SWAG--PKEATGRQEELGLERLTRGSFAPGEAV 127

Query: 117 GRLQVGLERPT 127
            R ++G  RPT
Sbjct: 128 ERTELGPGRPT 138



 Score = 35.8 bits (81), Expect = 0.009
 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 26/105 (24%)

Query: 2   TWA----CRGRREAG---------AGPGEADFRTIWACRGRQEAQ-------------AG 35
           +WA    C    EAG         AGP +AD+R+  A     + Q             AG
Sbjct: 41  SWAWRVRCEAEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKTQKRGLGRPPRAMSWAG 100

Query: 36  PRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPT 80
           P+ A   +   GL+  + G   PGEA  R ELG G     S  PT
Sbjct: 101 PKEATGRQEELGLERLTRGSFAPGEAVERTELGPGRPTCCSSRPT 145


>gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo
           sapiens]
          Length = 149

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 48/131 (36%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 2   TWACRGRREAGA--GPGEADFRTIWACRG--RQEAQAGPRGAHQPEAVWGLQMPSEGRSW 57
           +W CR  R+AGA    G ++ R  WA R     EA+AGP  A + +     +      S 
Sbjct: 18  SWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSA 77

Query: 58  PGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLETQPGGRAGPGEDA 116
           P EA    + GLG        P RA  SWAG   K+  GR E  GLE    G   PGE  
Sbjct: 78  PEEAAKSQKRGLGR-------PPRAM-SWAGP--KEATGRQEELGLERLTRGSFAPGEAV 127

Query: 117 GRLQVGLERPT 127
            R ++G  RPT
Sbjct: 128 ERTELGPGRPT 138



 Score = 36.2 bits (82), Expect = 0.007
 Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 26/105 (24%)

Query: 2   TWA----CRGRREAG---------AGPGEADFRTIWACRGRQEAQ-------------AG 35
           +WA    C    EAG         AGP +AD+R+  A     ++Q             AG
Sbjct: 41  SWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAG 100

Query: 36  PRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPT 80
           P+ A   +   GL+  + G   PGEA  R ELG G     S  PT
Sbjct: 101 PKEATGRQEELGLERLTRGSFAPGEAVERTELGPGRPTCCSSRPT 145


>gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
           sapiens]
          Length = 149

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 48/131 (36%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 2   TWACRGRREAGA--GPGEADFRTIWACRG--RQEAQAGPRGAHQPEAVWGLQMPSEGRSW 57
           +W CR  R+AGA    G ++ R  WA R     EA+AGP  A + +     +      S 
Sbjct: 18  SWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSA 77

Query: 58  PGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLETQPGGRAGPGEDA 116
           P EA    + GLG        P RA  SWAG   K+  GR E  GLE    G   PGE  
Sbjct: 78  PEEAAKSQKRGLGR-------PPRAM-SWAGP--KEATGRQEELGLERLTRGSFAPGEAV 127

Query: 117 GRLQVGLERPT 127
            R ++G  RPT
Sbjct: 128 ERTELGPGRPT 138



 Score = 36.2 bits (82), Expect = 0.007
 Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 26/105 (24%)

Query: 2   TWA----CRGRREAG---------AGPGEADFRTIWACRGRQEAQ-------------AG 35
           +WA    C    EAG         AGP +AD+R+  A     ++Q             AG
Sbjct: 41  SWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAG 100

Query: 36  PRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPT 80
           P+ A   +   GL+  + G   PGEA  R ELG G     S  PT
Sbjct: 101 PKEATGRQEELGLERLTRGSFAPGEAVERTELGPGRPTCCSSRPT 145


>gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo
           sapiens]
          Length = 149

 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 47/131 (35%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 2   TWACRGRREAGA----GPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSW 57
           +W CR  R+ GA       EA     W  R   EA+AGP  A + +     +      S 
Sbjct: 18  SWTCRSGRKPGALDWGDRSEARASWAWRVRCEAEAEAGPVQAFERQEAGPAKAAWRSSSA 77

Query: 58  PGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLETQPGGRAGPGEDA 116
           P EA    + GLG        P RA  SWAG   K+  GR E  GLE    G   PGE A
Sbjct: 78  PEEAAKSQKRGLGR-------PPRAM-SWAGP--KEATGRQEELGLERLTRGSFAPGEAA 127

Query: 117 GRLQVGLERPT 127
            R ++G  RPT
Sbjct: 128 ERTELGPGRPT 138



 Score = 33.1 bits (74), Expect = 0.059
 Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 26/105 (24%)

Query: 2   TWA----CRGRREAG---------AGPGEADFRTIWACRGRQEAQ-------------AG 35
           +WA    C    EAG         AGP +A +R+  A     ++Q             AG
Sbjct: 41  SWAWRVRCEAEAEAGPVQAFERQEAGPAKAAWRSSSAPEEAAKSQKRGLGRPPRAMSWAG 100

Query: 36  PRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPT 80
           P+ A   +   GL+  + G   PGEA  R ELG G     S  PT
Sbjct: 101 PKEATGRQEELGLERLTRGSFAPGEAAERTELGPGRPTCCSSRPT 145


>gi|239757861 PREDICTED: similar to armadillo repeat containing,
            X-linked 4 [Homo sapiens]
          Length = 2382

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 41/131 (31%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 12   GAGPGEADFRT---IWACRGRQE---AQAGPRGAHQPEAVWGLQMPSEGRSW--PGEATV 63
            G+ PG  D  +    W   G Q    A+ GP       +  G    S GRSW  PG+  V
Sbjct: 1688 GSRPGSEDQSSGIGSWGVAGGQVLGGARPGPADQSSGGSWAGTGNQSSGRSWIGPGDQAV 1747

Query: 64   ---RPELGLGSLASGS---CGPTRAAGSWAGAE-SKDVVGRPESGLETQ-PGGRAGPGED 115
               +PE    +   GS    G   +  SWAG+    + +G    G E Q  GG     ED
Sbjct: 1748 DCSKPEFEDQACGGGSWAGAGSQASGESWAGSRPGNEAIGGSRMGSEDQATGGSWARSED 1807

Query: 116  --AGRLQVGLE 124
              +GR QV  E
Sbjct: 1808 QASGRFQVSFE 1818



 Score = 36.6 bits (83), Expect = 0.005
 Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 4    ACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATV 63
            AC G   AGAG  +A   +    R   EA  G R   + +A  G    SE ++  G   V
Sbjct: 1758 ACGGGSWAGAG-SQASGESWAGSRPGNEAIGGSRMGSEDQATGGSWARSEDQA-SGRFQV 1815

Query: 64   RPELGLGSLASGSCGPTRAAGSWAGAESK-DVVGRPESGLETQPGGRAGPGEDA 116
              E+          G     GSW   E K D+V RP+   E     R+  GE+A
Sbjct: 1816 SFEVEANEGFWFGPGAEAVIGSWCWTEEKADIVSRPDDKDEATTASRSRAGEEA 1869



 Score = 31.6 bits (70), Expect = 0.17
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 29   RQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELG-LGSLASGSCGPTRAAGSWA 87
            + EA    R     EA+   ++ +E ++  G      E+  +GS      G    AG  A
Sbjct: 1854 KDEATTASRSRAGEEAMICSRIEAENKASSGSWIRSEEVAYMGSCVGAEAGAGAEAG--A 1911

Query: 88   GAESKDVVGRPESGLETQPGGRAGPGEDAG 117
            GAE+    G  E+G E   G  AGPG ++G
Sbjct: 1912 GAEAGAGAGA-EAGAEAGAGAGAGPGTESG 1940



 Score = 30.4 bits (67), Expect = 0.38
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 47   GLQMPSEGRSWPGEATVRPELGLGSLASG----SCGPTRAAGSWAGAESKDVVG-RPESG 101
            GL+  S G SW G          G  ASG      G     GSW GA  +DV G RP   
Sbjct: 1581 GLRDQSSGDSWAGT---------GDQASGWFCVCPGSQTNGGSWGGASGQDVGGSRPGPT 1631

Query: 102  LETQPGGRAGPG 113
             ++  G    PG
Sbjct: 1632 NQSSAGSWDSPG 1643


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAAAA---ATASIA 162

Query: 88  GAESKDVVGR----PESGLETQPGGRAGP 112
           GA ++   GR    P  G    P G  GP
Sbjct: 163 GAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
           B [Homo sapiens]
          Length = 231

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAAAA---ATASIA 162

Query: 88  GAESKDVVGR----PESGLETQPGGRAGP 112
           GA ++   GR    P  G    P G  GP
Sbjct: 163 GAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191


>gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo
          sapiens]
          Length = 275

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 16/80 (20%)

Query: 1  MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE 60
          M  A RGR   G GPGE    T+ A            G+H P  V G+Q+P      P  
Sbjct: 1  MAPAVRGREAVGEGPGELRGLTVGA------------GSHSPADVHGVQLPPPP---PTL 45

Query: 61 ATVRPELGLGSLASG-SCGP 79
          A  R + GL     G  CGP
Sbjct: 46 AATREQRGLHLAQQGVRCGP 65


>gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo
          sapiens]
          Length = 275

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 16/80 (20%)

Query: 1  MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE 60
          M  A RGR   G GPGE    T+ A            G+H P  V G+Q+P      P  
Sbjct: 1  MAPAVRGREAVGEGPGELRGLTVGA------------GSHSPADVHGVQLPPPP---PTL 45

Query: 61 ATVRPELGLGSLASG-SCGP 79
          A  R + GL     G  CGP
Sbjct: 46 AATREQRGLHLAQQGVRCGP 65


>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAA---VAATASIA 162

Query: 88  GAESKDVVGRPESGLETQPGGRAGP 112
           GA ++   GR   G    P GRA P
Sbjct: 163 GAPTQYPPGR---GTPPPPVGRATP 184


>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAA---VAATASIA 162

Query: 88  GAESKDVVGRPESGLETQPGGRAGP 112
           GA ++   GR   G    P GRA P
Sbjct: 163 GAPTQYPPGR---GTPPPPVGRATP 184


>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAA---VAATASIA 162

Query: 88  GAESKDVVGRPESGLETQPGGRAGP 112
           GA ++   GR   G    P GRA P
Sbjct: 163 GAPTQYPPGR---GTPPPPVGRATP 184


>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAA---VAATASIA 162

Query: 88  GAESKDVVGRPESGLETQPGGRAGP 112
           GA ++   GR   G    P GRA P
Sbjct: 163 GAPTQYPPGR---GTPPPPVGRATP 184


>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWA 87
           GR   +  P G   P+A  GL  P  G   P +  + P+ G G++A+ +     A  S A
Sbjct: 107 GRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAA---VAATASIA 162

Query: 88  GAESKDVVGRPESGLETQPGGRAGP 112
           GA ++   GR   G    P GRA P
Sbjct: 163 GAPTQYPPGR---GTPPPPVGRATP 184


>gi|124430752 kinesin family member 26B [Homo sapiens]
          Length = 2108

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 24  WACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCG-PTRA 82
           W  +  +E++AG R    PE   G  + S G   PG  T  P    GS    S G  T +
Sbjct: 40  WYRKAYEESRAGSRPT--PEGA-GSALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGTSS 96

Query: 83  AGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAG 117
            GS  G+      G P SG     GG + PG D G
Sbjct: 97  PGSLGGSPGFG-TGSPGSG----SGGGSSPGSDRG 126


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 10   EAGAGPGEA--DFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPEL 67
            EA    GEA  +   + A    +EAQ  P G   PEA    Q  SEG +  GE    P++
Sbjct: 2197 EAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGET-QGEKKGSPQV 2255

Query: 68   GLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLET---QPGGRAGP 112
             LG       G +  A   +    +D    P S G +T   +PG + GP
Sbjct: 2256 SLGD------GQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGP 2298



 Score = 29.3 bits (64), Expect = 0.85
 Identities = 35/113 (30%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 14   GPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWP-GEATVRPELGLGSL 72
            G  + +   I A    +EAQ    G   PEA    Q  SEG   P  E   +PEL     
Sbjct: 2155 GEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPEL---EG 2211

Query: 73   ASGSCGPTRAAGSWAGAESKDVVG--RPESGLETQPGGRAGPGEDAGRLQVGL 123
                     A     G E+ +  G  +PES  ETQ       GE  G  QV L
Sbjct: 2212 VEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQ-------GEKKGSPQVSL 2257



 Score = 28.9 bits (63), Expect = 1.1
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 7    GRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWP-GEATVRP 65
            G  +   G  + +   + A     EAQ        PEA W +Q  SEG   P  E   +P
Sbjct: 1858 GDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQP 1917

Query: 66   E 66
            E
Sbjct: 1918 E 1918


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 15   PGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQM---PSEGRSWPGEATVRPELGLGS 71
            PGE  F+     +G      G RG      + GLQ    P       G      E GL  
Sbjct: 965  PGERGFQGKPGLQGLP-GSTGDRGLPGEPGLRGLQGDVGPPGEMGMEGPPGTEGESGLQG 1023

Query: 72   LASGSCGPTRAAGSWAGAESKDVVGRP----------ESGLETQPGGRAGPGEDAGRLQV 121
               G+ G    AGS  G     + G P          + GL+  PGGR  PGED  + ++
Sbjct: 1024 -EPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEM 1082

Query: 122  GL 123
            GL
Sbjct: 1083 GL 1084


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 33.9 bits (76), Expect = 0.035
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 26  CRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGS 85
           C      + GPR     EA      P+ GR   G+ +  PE G   L+ G  GP RAA  
Sbjct: 27  CGSPGRGRRGPRPGPGDEAA-----PALGRR--GKGSGGPEAGADGLSRGERGPRRAAVP 79

Query: 86  WAGAESKDVVGRPESGLETQPGGRAGPGEDAGRLQVGLER 125
              A+     G P + L    GG  G    +  + +G ++
Sbjct: 80  ELSAQP---AGSPRASLAGSDGGGGGGSARSSGISLGYDQ 116


>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
            isoform b [Homo sapiens]
          Length = 1797

 Score = 33.1 bits (74), Expect = 0.059
 Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 37   RGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVG 96
            RG   PE     + P +    P E   R     G  ASG  GPTR  G         V+ 
Sbjct: 1347 RGGGSPEKPPSRRRPPD----PREHCSRLLSNNGPQASGRLGPTRERGGLP------VIE 1396

Query: 97   RPESGLETQPGGRAGPGEDAGR 118
             P +GLE    GR GP     R
Sbjct: 1397 GPRTGLEASGRGRLGPSRRCSR 1418


>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
            isoform a [Homo sapiens]
          Length = 1857

 Score = 33.1 bits (74), Expect = 0.059
 Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 37   RGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVG 96
            RG   PE     + P +    P E   R     G  ASG  GPTR  G         V+ 
Sbjct: 1407 RGGGSPEKPPSRRRPPD----PREHCSRLLSNNGPQASGRLGPTRERGGLP------VIE 1456

Query: 97   RPESGLETQPGGRAGPGEDAGR 118
             P +GLE    GR GP     R
Sbjct: 1457 GPRTGLEASGRGRLGPSRRCSR 1478


>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
           sapiens]
          Length = 190

 Score = 32.7 bits (73), Expect = 0.077
 Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 2   TWACRGRREAGAGPGEADFRTIW-ACRGRQEAQAG-PRGAHQPEAVWGLQMPSEGRSWPG 59
           +WA  G  E+GAGP  A  R    A RGRQ A++G P+   +P+A   L+     R+   
Sbjct: 47  SWARTG--ESGAGPSPAWRRCAGEASRGRQRARSGPPKSPRRPDA--QLRAARTQRARAQ 102

Query: 60  EATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGP--GEDAG 117
              +R E              RA   W   E  DV    +       GG A P  GEDA 
Sbjct: 103 TPQLRRE------------DARAGDGWPRREEDDVPPEEKRLRLLLEGGSAQPEDGEDAP 150

Query: 118 R 118
           R
Sbjct: 151 R 151


>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
           FLJ44672 [Homo sapiens]
          Length = 259

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 6/29 (20%)

Query: 105 QPGGRAGPGE------DAGRLQVGLERPT 127
           QPGG AGP E      +AG  QVGL RPT
Sbjct: 2   QPGGTAGPAEVAMQEAEAGPPQVGLSRPT 30



 Score = 28.9 bits (63), Expect = 1.1
 Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 13  AGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSL 72
           AGP E            QEA+AGP           L   S G + P     RP+ GL + 
Sbjct: 7   AGPAEV---------AMQEAEAGPPQVGLSRPTCSLPASSPGPALPPGCVSRPDSGLPTT 57

Query: 73  ASGSCGPTRAAGSWAGAESKDV-VGRPESGLETQPGGRA 110
           +  S  P +   +  G +  +    RP SGL     G A
Sbjct: 58  SLDS-APAQLPVALVGPQLPEAKFPRPRSGLTVASPGSA 95



 Score = 28.9 bits (63), Expect = 1.1
 Identities = 31/114 (27%), Positives = 37/114 (32%), Gaps = 20/114 (17%)

Query: 13  AGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSL 72
           A PG A      A R   +A  G R         GL   S G + P     RP LGL + 
Sbjct: 90  ASPGSAP-----ALRWHLQAPNGLRSVGSSRPSLGLLAASAGPNRPEVGLSRPSLGLPAA 144

Query: 73  ASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAGRLQVGLERP 126
           ++G   P                   E GLE Q  G  GP         G + P
Sbjct: 145 SAGPSHPQIGL---------------ELGLEEQQVGLPGPNSVLSAASPGAKLP 183


>gi|239757101 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 309

 Score = 31.6 bits (70), Expect = 0.17
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 28  GRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVR---PELGLGSLASGSC-GPTRAA 83
           GR++A  G R   +P       M    R +P  A +     EL  G        GP   A
Sbjct: 218 GRRDAVTGERCRPRPAVN---AMARRRRVFPSPALLALHSQELNCGKTPPNKVNGPRNPA 274

Query: 84  GSWAGAESKDVVGRPESGLETQPGGRAGP 112
           G+    ES    G P SG++T+PGG A P
Sbjct: 275 GALPERES----GSPGSGVKTRPGGHAIP 299


>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
          Length = 485

 Score = 31.6 bits (70), Expect = 0.17
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 68  GLGSLASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAG 117
           G GS +   CG    +GS  G  S    G P  G  + PG  +GPG D G
Sbjct: 156 GSGSGSGPGCGSVPGSGSGPGPGSGPGSG-PGHGSGSHPGPASGPGPDTG 204


>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
          Length = 501

 Score = 31.6 bits (70), Expect = 0.17
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 68  GLGSLASGSCGPTRAAGSWAGAESKDVVGRPESGLETQPGGRAGPGEDAG 117
           G GS +   CG    +GS  G  S    G P  G  + PG  +GPG D G
Sbjct: 156 GSGSGSGPGCGSVPGSGSGPGPGSGPGSG-PGHGSGSHPGPASGPGPDTG 204


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 33  QAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLAS--GSCGPTRAAG--SWAG 88
           Q GPRG   PE   G   P+      G+A  + +LG+  L    G  GP  + G   + G
Sbjct: 815 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 874

Query: 89  AESKDVVGRPESGLETQPGGRAGPGEDAGRLQVGLERPT 127
           A  +    +   G+  +PG R   G    R   G   PT
Sbjct: 875 ANGE----KGARGVAGKPGPRGQRGPTGPRGSRGARGPT 909



 Score = 26.6 bits (57), Expect = 5.5
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 21/89 (23%)

Query: 30  QEAQAGPRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPTRAAGSWAGA 89
           Q+A+   RG   P  + G   P  G   PG +  + E       SG  GP    G     
Sbjct: 533 QQARIALRGPPGPMGLTGRPGPVGG---PGSSGAKGE-------SGDPGPQGPRG----- 577

Query: 90  ESKDVVGRPESGLETQPGGRAGPGEDAGR 118
               V G P  G   +PG R  PG D GR
Sbjct: 578 ----VQGPP--GPTGKPGKRGRPGADGGR 600


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,673,823
Number of Sequences: 37866
Number of extensions: 356709
Number of successful extensions: 1386
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 313
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.