Guide to the Human Genome
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Name: LOC100289474 Sequence: fasta or formatted (275aa) NCBI GI: 239743967
Description:

PREDICTED: hypothetical protein XP_002344251

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         32           2
 C cysteine            1.8          5           1
 D aspartate           1.8          5           1
 E glutamate           4.4         12           1
 F phenylalanine       1.1          3           2
 G glycine             9.1         25           3
 H histidine           6.5         18           4
 I isoleucine          0.4          1           1
 K lysine              1.8          5           1
 L leucine            13.5         37           3
 M methionine          1.1          3           1
 N asparagine          0.0          0           0
 P proline             9.8         27           5
 Q glutamine           8.0         22           2
 R arginine            6.5         18           2
 S serine              6.9         19           2
 T threonine           2.5          7           1
 V valine              9.8         27           2
 W tryptophan          2.2          6           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344251 
LOC100290995          1.000   PREDICTED: hypothetical protein XP_002347123 
LOC100292758          0.018   PREDICTED: hypothetical protein 
HOXD8                 0.015   homeobox D8 
LOC100292515          0.013   PREDICTED: hypothetical protein 
LOC100289910          0.013   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.013   PREDICTED: hypothetical protein XP_002343075 
NKD1                  0.013   naked cuticle homolog 1 
COL3A1                0.011   collagen type III alpha 1 preproprotein 
NKD2                  0.011   naked cuticle homolog 2 
ZNF579                0.011   zinc finger protein 579 
LOC100289661          0.009   PREDICTED: hypothetical protein 
GTF2A1                0.009   TFIIA alpha, p55 isoform 2 
GTF2A1                0.009   TFIIA alpha, p55 isoform 1 
CHD3                  0.009   chromodomain helicase DNA binding protein 3 isoform...
NRG2                  0.007   neuregulin 2 isoform 2 
NRG2                  0.007   neuregulin 2 isoform 4 
NRG2                  0.007   neuregulin 2 isoform 3 
NRG2                  0.007   neuregulin 2 isoform 1 
LOC100291554          0.007   PREDICTED: hypothetical protein XP_002345934 
LOC100290255          0.007   PREDICTED: hypothetical protein XP_002346835 
LOC100287733          0.007   PREDICTED: hypothetical protein XP_002342667 
KHDRBS2               0.007   KH domain-containing, RNA-binding, signal transduct...
CXXC1                 0.007   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.007   CXXC finger 1 (PHD domain) isoform 2 
LOC100133142          0.006   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.006   PREDICTED: similar to zinc finger protein 208 [Homo...
GEMIN5                0.006   gemin 5 
DNAJC1                0.006   DnaJ (Hsp40) homolog, subfamily C, member 1 
KLF1                  0.006   Kruppel-like factor 1 (erythroid) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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