Guide to the Human Genome
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Name: LOC100293612 Sequence: fasta or formatted (194aa) NCBI GI: 239753591
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         21           3
 C cysteine            7.2         14           2
 D aspartate           1.5          3           1
 E glutamate           4.6          9           1
 F phenylalanine       3.6          7           1
 G glycine             9.3         18           1
 H histidine           3.1          6           1
 I isoleucine          1.0          2           1
 K lysine              7.2         14           2
 L leucine             7.2         14           1
 M methionine          2.6          5           1
 N asparagine          3.1          6           1
 P proline             6.2         12           2
 Q glutamine           5.7         11           1
 R arginine            7.2         14           2
 S serine              9.3         18           1
 T threonine           4.6          9           1
 V valine              3.1          6           1
 W tryptophan          2.1          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MEGF6                 0.026   EGF-like-domain, multiple 3 
KCNH3                 0.026   potassium voltage-gated channel, subfamily H (eag-re...
PEAR1                 0.021   platelet endothelial aggregation receptor 1 
FRAS1                 0.018   Fraser syndrome 1 
LOC100293575          0.015   PREDICTED: hypothetical protein 
LOC100290681          0.015   PREDICTED: hypothetical protein XP_002346859 
LOC100287330          0.015   PREDICTED: hypothetical protein XP_002342702 
HECW2                 0.015   HECT, C2 and WW domain containing E3 ubiquitin prote...
PAPPA2                0.013   pappalysin 2 isoform 1 
KCP                   0.013   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.013   cysteine rich BMP regulator 2 isoform 1 
EPHA1                 0.013   ephrin receptor EphA1 
TRIM44                0.013   DIPB protein 
LOC100292196          0.013   PREDICTED: hypothetical protein 
LOC100293933          0.013   PREDICTED: hypothetical protein 
LOC100290206          0.013   PREDICTED: hypothetical protein XP_002347062 
LOC100287139          0.013   PREDICTED: hypothetical protein XP_002342915 
IL22RA2               0.013   interleukin 22-binding protein isoform 1 
FASTKD3               0.013   FAST kinase domains 3 
LOC100292673          0.010   PREDICTED: hypothetical protein 
LOC100292982          0.010   PREDICTED: hypothetical protein 
LOC100291194          0.010   PREDICTED: hypothetical protein XP_002348117 
LOC100289817          0.010   PREDICTED: hypothetical protein XP_002347376 
LOC100288065          0.010   PREDICTED: hypothetical protein XP_002344233 
LOC100289240          0.010   PREDICTED: hypothetical protein XP_002343214 
CELSR2                0.010   cadherin EGF LAG seven-pass G-type receptor 2 
GNAS                  0.010   GNAS complex locus XLas 
LOC644280             0.010   PREDICTED: similar to hCG2041260 
LOC644280             0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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