Guide to the Human Genome
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Name: LOC100289817 Sequence: fasta or formatted (282aa) NCBI GI: 239750347
Description:

PREDICTED: hypothetical protein XP_002347376

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         24           2
 C cysteine            3.9         11           1
 D aspartate           2.8          8           1
 E glutamate           2.5          7           1
 F phenylalanine       2.1          6           1
 G glycine            10.6         30           3
 H histidine           6.7         19           1
 I isoleucine          0.4          1           1
 K lysine              2.8          8           1
 L leucine             9.6         27           2
 M methionine          0.4          1           1
 N asparagine          1.1          3           1
 P proline             6.4         18           1
 Q glutamine           5.3         15           2
 R arginine           10.6         30           3
 S serine             11.0         31           4
 T threonine           4.6         13           1
 V valine              7.4         21           1
 W tryptophan          2.5          7           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347376 
LOC100292982          1.000   PREDICTED: hypothetical protein 
LOC100289240          1.000   PREDICTED: hypothetical protein XP_002343214 
FLG                   0.025   filaggrin 
PPRC1                 0.025   peroxisome proliferator-activated receptor gamma, co...
FLJ37078              0.021   hypothetical protein LOC222183 
LOC100288496          0.018   PREDICTED: hypothetical protein XP_002342747 
SRRM2                 0.018   splicing coactivator subunit SRm300 
LOC100131251          0.016   PREDICTED: hypothetical protein 
LOC100131251          0.016   PREDICTED: hypothetical protein 
LOC100127891          0.014   PREDICTED: hypothetical protein 
UPF3A                 0.014   UPF3 regulator of nonsense transcripts homolog A iso...
UPF3A                 0.014   UPF3 regulator of nonsense transcripts homolog A iso...
KIAA1429              0.014   hypothetical protein LOC25962 isoform 1 
FLJ31945              0.012   PREDICTED: hypothetical protein 
LOC728361             0.012   PREDICTED: similar to OVO homolog-like 1 
LOC728361             0.012   PREDICTED: similar to OVO homolog-like 1 
LOC728361             0.012   PREDICTED: similar to OVO homolog-like 1 
MCF2L2                0.012   Rho family guanine-nucleotide exchange factor 
NKTR                  0.012   natural killer-tumor recognition sequence 
MFSD10                0.011   major facilitator superfamily domain containing 10 ...
LOC100291593          0.011   PREDICTED: similar to hCG2012845 
LOC100132848          0.011   PREDICTED: hypothetical protein 
MFSD10                0.011   major facilitator superfamily domain containing 10 ...
LOC100292370          0.011   PREDICTED: hypothetical protein 
LOC728767             0.011   PREDICTED: hypothetical protein 
FLJ31945              0.011   PREDICTED: hypothetical protein 
LOC728767             0.011   PREDICTED: hypothetical protein 
FLJ31945              0.011   PREDICTED: hypothetical protein 
AKAP11                0.009   A-kinase anchor protein 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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