Guide to the Human Genome
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Name: LOC100288065 Sequence: fasta or formatted (571aa) NCBI GI: 239746618
Description:

PREDICTED: hypothetical protein XP_002344233

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         55           3
 C cysteine            3.5         20           2
 D aspartate           2.5         14           2
 E glutamate           5.4         31           3
 F phenylalanine       2.3         13           2
 G glycine            11.2         64           3
 H histidine           3.7         21           1
 I isoleucine          1.6          9           1
 K lysine              2.8         16           2
 L leucine             8.6         49           2
 M methionine          0.7          4           1
 N asparagine          1.2          7           1
 P proline            10.9         62           3
 Q glutamine           6.0         34           2
 R arginine            7.5         43           2
 S serine             10.9         62           2
 T threonine           4.0         23           3
 V valine              4.9         28           2
 W tryptophan          2.6         15           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344233 
LOC100292673          1.000   PREDICTED: hypothetical protein 
LOC100291194          1.000   PREDICTED: hypothetical protein XP_002348117 
BCL6                  0.017   B-cell lymphoma 6 protein isoform 1 
BCL6                  0.017   B-cell lymphoma 6 protein isoform 2 
BCL6                  0.017   B-cell lymphoma 6 protein isoform 1 
DVL2                  0.015   dishevelled 2 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
COL9A1                0.013   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.013   alpha 1 type IX collagen isoform 2 precursor 
COL22A1               0.013   collagen, type XXII, alpha 1 
EN1                   0.012   engrailed homeobox 1 
LOC100133305          0.012   PREDICTED: hypothetical protein 
LOC100133305          0.012   PREDICTED: hypothetical protein 
GLP-1                 0.012   GATA like protein-1 
ARHGEF5               0.012   rho guanine nucleotide exchange factor 5 
TBKBP1                0.012   TBK1 binding protein 1 
FLJ37078              0.012   hypothetical protein LOC222183 
ROBO4                 0.011   roundabout homolog 4, magic roundabout 
FOXA2                 0.011   forkhead box A2 isoform 2 
FOXA2                 0.011   forkhead box A2 isoform 1 
BAT2                  0.010   HLA-B associated transcript-2 
SH3BP1                0.010   SH3-domain binding protein 1 
RANBP3                0.010   RAN binding protein 3 isoform RANBP3-a 
FBLN2                 0.010   fibulin 2 isoform b precursor 
FBLN2                 0.010   fibulin 2 isoform a precursor 
HIC1                  0.009   hypermethylated in cancer 1 isoform 2 
HIC1                  0.009   hypermethylated in cancer 1 isoform 1 
IGFBPL1               0.009   insulin-like growth factor binding protein-like 1 [H...
RICH2                 0.009   Rho GTPase-activating protein RICH2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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