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Search of human proteins with 239753407
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 370 e-103
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 57 1e-08
gi|60460889 Myb protein P42POP [Homo sapiens] 53 1e-07
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 53 2e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 2e-07
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 52 2e-07
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 52 4e-07
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 52 4e-07
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 51 6e-07
gi|51479192 ring finger protein 1 [Homo sapiens] 51 6e-07
gi|13699803 WAS protein family, member 3 [Homo sapiens] 51 6e-07
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 50 8e-07
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 50 8e-07
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 50 8e-07
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 50 8e-07
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 50 8e-07
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 50 8e-07
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 50 8e-07
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 50 1e-06
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 50 1e-06
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 50 1e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 50 1e-06
gi|116292174 fidgetin-like 2 [Homo sapiens] 50 1e-06
gi|38788260 bromodomain PHD finger transcription factor isoform ... 50 1e-06
gi|38788274 bromodomain PHD finger transcription factor isoform ... 50 1e-06
gi|33356148 formin-like 1 [Homo sapiens] 50 1e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 2e-06
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 49 2e-06
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 49 2e-06
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a... 49 3e-06
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 370 bits (949), Expect = e-103
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MRAPPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
MRAPPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS
Sbjct: 1 MRAPPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
Query: 61 GGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPK 120
GGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPK
Sbjct: 61 GGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPK 120
Query: 121 GPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSSVREDFVCALPLWPA 180
GPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSSVREDFVCALPLWPA
Sbjct: 121 GPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSSVREDFVCALPLWPA 180
Query: 181 LG 182
LG
Sbjct: 181 LG 182
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 56.6 bits (135), Expect = 1e-08
Identities = 38/122 (31%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 30 GGQRNSTSARAPPP---------PPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVG 80
GG N+ A PP P L P+ + G +G G A P L + G
Sbjct: 84 GGSANTRGASTPPTLGDLFAGGFPVLRPAGQRDV-AGGKTGQGPGSRAPSPRLPNKTISG 142
Query: 81 SAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPF 140
AS R G + PP P +P P PP P P P P PLPS P+
Sbjct: 143 PLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVS 202
Query: 141 PP 142
PP
Sbjct: 203 PP 204
Score = 43.5 bits (101), Expect = 1e-04
Identities = 42/164 (25%), Positives = 57/164 (34%), Gaps = 28/164 (17%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGG 64
PA AGG TG GP +R + + + PP P ++S + G++ ++
Sbjct: 111 PAGQRDVAGGKTGQGP-GSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRP 169
Query: 65 SGSAGQPT--------LGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQ 116
+ A P L L S + G L PP P PPP PP
Sbjct: 170 NVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPP 229
Query: 117 PGPKGPASP-------------------RPLPSPLPLLETTPFP 141
P P P P P+P PLPLL +P
Sbjct: 230 PPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYP 273
Score = 40.8 bits (94), Expect = 6e-04
Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALR 100
PPPPPL P SSS G T G++ V A
Sbjct: 181 PPPPPLPPPLPSSSPIKTPL----VSPPGPLTKGNLPVVAPPVPCAP------------- 223
Query: 101 AREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTP 145
PPPP PPP+PP P S + + L L P PP P
Sbjct: 224 ---PPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLP 265
Score = 37.4 bits (85), Expect = 0.007
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 104 PPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPS-RRQDRRG 153
PPPP PPP PP P P G P P +P P DT S RR D +G
Sbjct: 4 PPPP--PPPLPPPPPPLGAPPPPPPSAP-------PVSTDTSSLRRADPKG 45
Score = 33.5 bits (75), Expect = 0.10
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALR 100
PPP PL P + + + S + RAS A G +
Sbjct: 261 PPPLPLLPPCGYPGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNS-- 318
Query: 101 AREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGG 154
+ E PPPL PP SP P A + LP+P P PP + Q +R G
Sbjct: 319 SSETPPPL-PPKSPSFQAPPQKAGAQALPAP-------PAPPGSQPFLQKKRHG 364
Score = 26.9 bits (58), Expect = 9.7
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 42 PPPPLAPSSSSSSGSSGSSG---GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTA 98
PPPPL P +S S +S + G S S P L A + +AG A
Sbjct: 292 PPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQ-------KAGAQA 344
Query: 99 LRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLP 133
L A PP P + G G + P P P
Sbjct: 345 LPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAP 379
Score = 26.9 bits (58), Expect = 9.7
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 34 NSTSARAPPPPPLAPSSSSSSGSSGSSG--GGGSGSAGQPTLGSMLAVGSAARRASERAG 91
NS+S PP PP +PS + +G+ + QP L ++ R G
Sbjct: 317 NSSSETPPPLPPKSPSFQAPPQKAGAQALPAPPAPPGSQPFL---------QKKRHGRPG 367
Query: 92 GRAGGTALRAREPPPPLLPPPSPPQPGP 119
AGG L PPP+PP P
Sbjct: 368 --AGGGKLN---------PPPAPPARSP 384
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 53.1 bits (126), Expect = 1e-07
Identities = 43/112 (38%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTA-- 98
PPPPPLA + S + SA P+L + A A E AG G A
Sbjct: 228 PPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKL 287
Query: 99 ---LRAREP-----PPPLLPPPSPPQPGPKGPASPRP-LPSPLPLLETTPFP 141
L A P P LPPP PP P P P PRP LP P P +E TP P
Sbjct: 288 SEALSALLPLLPGTPVDSLPPPLPPPPPP--PPPPRPVLPPPAPKVEITPEP 337
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/180 (25%), Positives = 55/180 (30%), Gaps = 20/180 (11%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLA---------PSSSSSSGSSGSSGGGGSGSAG 69
GP A G + + + PPPP A + + GS S
Sbjct: 121 GPGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE 180
Query: 70 QPTLGSMLAVGSAARRASERAGGRAGGT--------ALRAREPPPPLLPPPSPPQPGPKG 121
S R ER AL P PPL PPP Q P
Sbjct: 181 PWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAP-S 239
Query: 122 PASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEE--RVLLSALSSVREDFVCALPLWP 179
P SP P P P P L + D +Q+ E L L+ + E LPL P
Sbjct: 240 PPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLP 299
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 52.8 bits (125), Expect = 2e-07
Identities = 57/171 (33%), Positives = 68/171 (39%), Gaps = 33/171 (19%)
Query: 4 PPATAATAAG--GATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
P AA A G G GGP+A G+ G+R A A P P+ S + +GS G
Sbjct: 41 PGDEAAPALGRRGKGSGGPEAGA-DGLSRGERGPRRA-AVPELSAQPAGSPRASLAGSDG 98
Query: 62 GGGSGSA-------------GQPTLG--------SMLAVGSAARRASERAGGRAGGTALR 100
GGG GSA G P G +VGSA R+S + G G
Sbjct: 99 GGGGGSARSSGISLGYDQRHGSPRSGRSDPRPGPGPPSVGSA--RSSVSSLGSRGSAGAY 156
Query: 101 AREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDR 151
A PP P P+ P P GPA P PLP L P PS + R
Sbjct: 157 ADFLPPGACPAPA-RSPEPAGPA-----PFPLPALPLPPGREGGPSAAERR 201
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.4 bits (124), Expect = 2e-07
Identities = 43/132 (32%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 3 APPATAATAAGGATGGGPQAAR----RSGVQG-----GQRNSTSARAPPPPPLAPSSSSS 53
A PA G GPQ R +G QG G R + + PP PP +P
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Query: 54 SGSSGSSG-GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPP 112
SG+SG +G G GSAG P + + R GR G P+ PP
Sbjct: 1132 SGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPR--GRTGDAG--------PVGPPG 1181
Query: 113 SPPQPGPKGPAS 124
P PGP GP S
Sbjct: 1182 PPGPPGPPGPPS 1193
Score = 48.1 bits (113), Expect = 4e-06
Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 17/143 (11%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQG-----GQRNSTSARAPPPPPLAPSSSSSSGSSG 58
PP A G P A G G G R T PP P AP + G +G
Sbjct: 1002 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1061
Query: 59 SSGG-GGSGSAGQP----TLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPS 113
SG G +G AG +G+ G R + G G ++ L PP
Sbjct: 1062 KSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPG 1121
Query: 114 PP-------QPGPKGPASPRPLP 129
PP G GPA PR P
Sbjct: 1122 PPGSPGEQGPSGASGPAGPRGPP 1144
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/128 (28%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 13 GGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG----GGGSGSA 68
G GP+ A S + G R T PP P AP SG SG +G G G
Sbjct: 743 GDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDR 802
Query: 69 GQP-TLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQP---------- 117
G+P G G A G G + PP P PP P
Sbjct: 803 GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAK 862
Query: 118 GPKGPASP 125
G +G A P
Sbjct: 863 GARGSAGP 870
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/173 (27%), Positives = 60/173 (34%), Gaps = 28/173 (16%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPP-----PPLAPSSSSSSGSSG 58
PP A G A +G +G + P P PP A + G G
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830
Query: 59 SSGG-------GGSGSAGQP-TLGSMLAVGSAARRASERAGGRAG--GTALRAREP-PPP 107
+G G +G AG P +G++ A G+ R S G G G A R P P
Sbjct: 831 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSG 890
Query: 108 LLPPPSPPQP-------GPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRG 153
PP PP P GP+G P P E P P P+ + G
Sbjct: 891 NAGPPGPPGPAGKEGGKGPRGETGPAGRPG-----EVGPPGPPGPAGEKGSPG 938
Score = 41.6 bits (96), Expect = 4e-04
Identities = 40/142 (28%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGS----GSAGQPTLG 74
GP AR + G P PP P + + G +G G GS G G+P G
Sbjct: 317 GPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP--G 374
Query: 75 SMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPL 134
G+A + A G+ G A A P P P GP GP P P P
Sbjct: 375 PPGPAGAAGPAGNPGADGQPG--AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP--- 429
Query: 135 LETTPFPPDTPSRRQDRRGGGE 156
+ P P + D GE
Sbjct: 430 -KGNSGEPGAPGSKGDTGAKGE 450
Score = 41.6 bits (96), Expect = 4e-04
Identities = 44/148 (29%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 4 PPATAATAAGGATGG-GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG- 61
P A + GA G GP + G+ AR P P P G GS G
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF 495
Query: 62 GGGSGSAG-QPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPK 120
G G AG + G + G A + S GR G L P SP PGP
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL-----PGAKGLTGSPGSPGPD 550
Query: 121 GPASPRPLPSPLPLLETTPFPPDTPSRR 148
G P P P + P PP P R
Sbjct: 551 GKTGP---PGPAG-QDGRPGPPGPPGAR 574
Score = 41.2 bits (95), Expect = 5e-04
Identities = 40/157 (25%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
PP A G A +G QG G R P PP ++ +G+ G+ G
Sbjct: 333 PPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG 392
Query: 62 G-GGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPK 120
G G+ G P + A G R G G PP P P PG K
Sbjct: 393 QPGAKGANGAPGIAG--APGFPGARGPSGPQGPGG--------PPGPKGNSGEPGAPGSK 442
Query: 121 GPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEE 157
G + P P+ + P P+ + +RG E
Sbjct: 443 GDTGAKGEPGPVGVQ-----GPPGPAGEEGKRGARGE 474
Score = 40.4 bits (93), Expect = 8e-04
Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGG-GGSGSAGQPTLGSML 77
GP AR G+R P P A + + G+ G +G G GS G P L M
Sbjct: 671 GPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 730
Query: 78 AV-------------GSAARRASERAGGRAGGTALRAR-EPPPPLLPPPSPPQPGPKGPA 123
G A + ++ + G+ G L PP P P + GP GPA
Sbjct: 731 GERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPA 790
Query: 124 SP 125
P
Sbjct: 791 GP 792
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 20 PQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGS-GSAGQPTLGSMLA 78
P +GV+G + T R P P P G G G G G G P LG A
Sbjct: 102 PTDQETTGVEG-PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFA 160
Query: 79 VGSAARRASERAGGRA-----GGTALRAREPPPPLL-------PPPSPPQPGPKGPASPR 126
+ + GG + G + R PP PP P +PG GP PR
Sbjct: 161 PQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPR 220
Query: 127 PLPSP 131
P P
Sbjct: 221 GPPGP 225
Score = 39.3 bits (90), Expect = 0.002
Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 18 GGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGS 75
G P SG G G ++ R PP P P + G SG G G
Sbjct: 971 GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG----------- 1019
Query: 76 MLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPA 123
A GS R S A G G T P P P +P PGP GPA
Sbjct: 1020 --AEGSPGRDGSPGAKGDRGETG-----PAGPPGAPGAPGAPGPVGPA 1060
Score = 38.9 bits (89), Expect = 0.002
Identities = 46/166 (27%), Positives = 59/166 (35%), Gaps = 18/166 (10%)
Query: 4 PPATAATAAGGATG--------GGPQAARRSGVQGGQ--RNSTSARAPPP---PPLAPSS 50
P AT A G G G P +G +GG+ R T P PP P
Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930
Query: 51 SSSSGSSGSSG-GGGSGSAG-QPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPL 108
+ GS G+ G G G+ G Q G VG +R G G + ++ P
Sbjct: 931 AGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 990
Query: 109 LPPPSPPQP-GPKGPASP--RPLPSPLPLLETTPFPPDTPSRRQDR 151
PP P GP G A P P E +P +P + DR
Sbjct: 991 SGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Score = 38.1 bits (87), Expect = 0.004
Identities = 40/132 (30%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 4 PPATAATAAGGATG--GGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
P A G TG G P ++G G PP PP A + G G G
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPG-PAGQDGRPGPPGPPGARGQAGVMGFPGPKG 587
Query: 62 GGGS-GSAGQPTL-GSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGP 119
G G AG+ + G AVG A + G AG A+ PP P P + GP
Sbjct: 588 AAGEPGKAGERGVPGPPGAVGPAGK------DGEAG-----AQGPPGPAGPAGERGEQGP 636
Query: 120 KGPASPRPLPSP 131
G + LP P
Sbjct: 637 AGSPGFQGLPGP 648
Score = 36.6 bits (83), Expect = 0.012
Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG-------GGGSGSAGQP 71
GPQ + + G+ ++ P PP P + G +G G G G+ G P
Sbjct: 197 GPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLP 256
Query: 72 -TLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLP 129
T G G + A G AG P P P SP + G G PR LP
Sbjct: 257 GTAGLPGMKGHRGFSGLDGAKGDAG--------PAGPKGEPGSPGENGAPGQMGPRGLP 307
Score = 27.7 bits (60), Expect = 5.7
Identities = 23/95 (24%), Positives = 26/95 (27%), Gaps = 26/95 (27%)
Query: 63 GGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPP------- 115
G Q T G G R G G + + P PP PP
Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGG 157
Query: 116 -------------------QPGPKGPASPRPLPSP 131
PGP GP+ PR LP P
Sbjct: 158 NFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGP 192
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 52.4 bits (124), Expect = 2e-07
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 7 TAATAAGGATGGG-----PQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
T+ AGG G G P++ + V+G + ++ + + A ++ ++ +SG
Sbjct: 195 TSGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSG 254
Query: 62 GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKG 121
G G+G+ + L + G AG PPPL PP+P
Sbjct: 255 GVGAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGS--------PPPLTLPPTPSPATAVT 306
Query: 122 PASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSSV 167
AS +P P P P + P P R+ R +R +L +S +
Sbjct: 307 AASAQP-PGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGI 351
Score = 37.0 bits (84), Expect = 0.009
Identities = 43/128 (33%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
PP+ +A AAG A G + +G G R + L + S+ S+G G
Sbjct: 31 PPSPSAAAAGAAGARGSE----TGDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGTG 86
Query: 64 GSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSP-PQPGPKGP 122
G A P L A S AR S G R +L A P PPL SP P+PG
Sbjct: 87 G---AEPPALSP--APASPARPVSPAPGRR---LSLWAVPPGPPLSGGLSPDPKPGGAPT 138
Query: 123 ASPRPLPS 130
+S RPL S
Sbjct: 139 SSRRPLLS 146
Score = 35.4 bits (80), Expect = 0.027
Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGR------A 94
PPPPP S+ ++G++G GS G P GS ++ ER R +
Sbjct: 28 PPPPPS-----PSAAAAGAAGARGS-ETGDP--GSPRGAEEPGKKRHERLFHRQDALWIS 79
Query: 95 GGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGG 154
+A PP L P P+ P P SP P L L P PP + D + G
Sbjct: 80 TSSAGTGGAEPPALSPAPA----SPARPVSPAP-GRRLSLWAVPPGPPLSGGLSPDPKPG 134
Query: 155 G----EERVLLSALS 165
G R LLS+ S
Sbjct: 135 GAPTSSRRPLLSSPS 149
Score = 31.2 bits (69), Expect = 0.51
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 28/124 (22%)
Query: 9 ATAAGGATGGGPQA--------ARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
+T++ G G P A AR G+R S A PP PPL S S
Sbjct: 79 STSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWA-VPPGPPL-----SGGLSPDPK 132
Query: 61 GGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPP-------PLLPPPS 113
GG S+ +P L S G GRAGG + P P + PPP
Sbjct: 133 PGGAPTSSRRPLLSSPSWGGPEPE-------GRAGGGIPGSSSPHPGTGSRRLKVAPPPP 185
Query: 114 PPQP 117
P+P
Sbjct: 186 APKP 189
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 51.6 bits (122), Expect = 4e-07
Identities = 47/156 (30%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 3 APPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGG 62
AP A ++ GG T GP G T RAP + G+ + G
Sbjct: 1086 APSAVVSSRNGGETAPGPLGPAPKN--GTLEPGTERRAP----------ETGGAPRAPGA 1133
Query: 63 G--GSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPK 120
G GS G+ +G+ A G + G T +PPPP LPPP QP
Sbjct: 1134 GRLDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTR---PQPPPPPLPPPPEAQPRRL 1190
Query: 121 GPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGE 156
PA PR P P E P PD+ R GG+
Sbjct: 1191 EPAPPRARPEVAP--EGEPGAPDS-------RAGGD 1217
Score = 49.3 bits (116), Expect = 2e-06
Identities = 37/97 (38%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 41 PPPPPLAPSSSSSSG---SSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGT 97
PPPPP AP+ ++S S+ +S G G S G P G G G GG
Sbjct: 785 PPPPPRAPADPAASPDPPSAVASPGSGLSSPG-PKPGDS---GYETETPFSPEGAFPGGG 840
Query: 98 ALRAREPPPPLLPPPSPPQPG-PKGPASPRPLPSPLP 133
A P P PP PP PG P+ P P PLP P P
Sbjct: 841 AAEEEGVPRPRAPP-EPPDPGAPRPPPDPGPLPLPGP 876
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 97 TALRAREPPPPLLPPPSP-----PQPGPKGPASPRP--LPSPLPLLETTP--FPPDTPSR 147
T L + PP P PPP P P P P ++PRP L SP PLL+ P P D +
Sbjct: 438 TYLLSERPPRPPPPPPPPRDGPFPWPWPPAHSAPRPGTLSSPFPLLDGFPGADPDDVLTV 497
Query: 148 RQDRRG 153
+ RG
Sbjct: 498 TESSRG 503
Score = 34.7 bits (78), Expect = 0.046
Identities = 46/186 (24%), Positives = 60/186 (32%), Gaps = 35/186 (18%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNST-----SARAPPPPPLAPSSSSSSGSSGS 59
PA G A + G G+ +S+ S R P P PL + S
Sbjct: 654 PAEVLGERGTAPWVEEEEEEEEGSSPGEDSSSLGGGPSRRGPLPCPLCSREGACSCLPLE 713
Query: 60 SGGGGSGSAGQPTLG------------------SMLAVGSAARRASERAGGRAGGTALR- 100
G +G G P LG + L + A E G A +
Sbjct: 714 RGDAVAGWGGHPALGCPHPPEDDSSLRAERGSLADLPMAPPASAPPEFLDPLMGAAAPQY 773
Query: 101 -AREPPPPLLPPPSPPQPGPKGPASPRP----------LPSPLPLLETTPFPPDTPSRRQ 149
R PPP PPP PP+ ASP P L SP P + + +TP +
Sbjct: 774 PGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPE 833
Query: 150 DRRGGG 155
GG
Sbjct: 834 GAFPGG 839
Score = 28.5 bits (62), Expect = 3.3
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 85 RASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDT 144
+ SE G R R E P P P P GPA P+P LE P
Sbjct: 1031 KVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEPAPETSLERAP----A 1086
Query: 145 PSRRQDRRGGGE 156
PS R GGE
Sbjct: 1087 PSAVVSSRNGGE 1098
Score = 27.7 bits (60), Expect = 5.7
Identities = 33/130 (25%), Positives = 38/130 (29%), Gaps = 48/130 (36%)
Query: 28 VQGGQRNSTSARAPPPPPLAPSSSSSSGS--SGSSGGGGSGSAGQPTLGSMLAVGSAARR 85
VQ T PP PP P ++ S SG GGS +
Sbjct: 1402 VQAPPEGDTDPSTPPAPPTPPHPATPGDGFPSNDSGFGGSFEWAEDF------------- 1448
Query: 86 ASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTP 145
PLLPPP PP + S P LET P P
Sbjct: 1449 ---------------------PLLPPPGPPLCFSRFSVS--------PALET----PGPP 1475
Query: 146 SRRQDRRGGG 155
+R D R G
Sbjct: 1476 ARAPDARPAG 1485
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 51.6 bits (122), Expect = 4e-07
Identities = 48/150 (32%), Positives = 57/150 (38%), Gaps = 24/150 (16%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLA 78
GPQ + R GG P P P APS S GS+GGGG S G L
Sbjct: 1042 GPQPSLRGWRGGG---------PSPTPGAPSPSHH----GSAGGGGGSSQGPALRYFQLP 1088
Query: 79 --VGSAARRASERAG-GRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLL 135
SAA R+G GR G + + P PP P P PASP+P P+
Sbjct: 1089 PRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPS 1148
Query: 136 ETTPFP--------PDTPSRRQDRRGGGEE 157
E P P T S + +G E
Sbjct: 1149 EKNSIPIPTIIIKAPSTSSSGRSSQGSSTE 1178
Score = 42.4 bits (98), Expect = 2e-04
Identities = 50/155 (32%), Positives = 59/155 (38%), Gaps = 21/155 (13%)
Query: 6 ATAATAAGGATGGGPQAARRSG----------VQGGQRNSTSARAPPPPPLAPSSSSSSG 55
A +AGG GGG A SG + G +S PP PP + S G
Sbjct: 1702 AEGGGSAGG--GGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRG 1759
Query: 56 SS-GSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSP 114
+ G+SGG G +G G V + S G G ALRA PP P
Sbjct: 1760 RALGASGGLRPGPSG----GLRDPVTPTSPTVSVTGAGTDGLLALRACSGPPTAGVAGGP 1815
Query: 115 PQPGPKGPASPRPLPSPLP--LL--ETTPFPPDTP 145
P+ P P P S LP LL E P PP P
Sbjct: 1816 VAVEPEVPPVPLPTASSLPRKLLPWEEGPGPPPPP 1850
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 27/107 (25%)
Query: 36 TSARAPPPPPL--APSSSSS------------SGSSGSSGGGGSGSAGQPTLGSMLAVGS 81
TS +P PPP APS +S + SSG S G S A PT
Sbjct: 1133 TSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPT--------- 1183
Query: 82 AARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPL 128
E GG GG + + P +PP P P P P+ P L
Sbjct: 1184 ----QPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATL 1226
Score = 39.7 bits (91), Expect = 0.001
Identities = 45/170 (26%), Positives = 66/170 (38%), Gaps = 26/170 (15%)
Query: 10 TAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAG 69
+A GA GG A R+ GG ++ ++ PP P + P + G A
Sbjct: 1303 SAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVHPLT---------------GKAL 1347
Query: 70 QPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLP 129
P S L + AAR + + GG P PP PP + P P P
Sbjct: 1348 DPA--SPLGLALAARERALKESSEGGGA------PQPPPRPPSPRYEAPPPTPHHHSPHA 1399
Query: 130 SPLPLLETTPFPPDTPSRRQ--DRRG-GGEERVLLSALSSVREDFVCALP 176
P+L P P+RR+ R G G +E+ L ++ + R + LP
Sbjct: 1400 HHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLP 1449
Score = 37.7 bits (86), Expect = 0.005
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 17/58 (29%)
Query: 104 PPPPLLPPPSPPQ-------------PGPKG----PASPRPLPSPLPLLETTPFPPDT 144
PPPP PP PP P P+G P S PLP+ P P PPDT
Sbjct: 921 PPPPTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDT 978
Score = 37.0 bits (84), Expect = 0.009
Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 4 PPATAATA-AGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGG 62
PPA AA A A G P SG++ S+S A + SS S G S G
Sbjct: 1650 PPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAG 1709
Query: 63 GGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSP-------- 114
GG G+ G L A G+A G + P PP L PS
Sbjct: 1710 GGGGAGAGVASGPELLDTYVA-----YLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGA 1764
Query: 115 ---PQPGPKG 121
+PGP G
Sbjct: 1765 SGGLRPGPSG 1774
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 23/98 (23%)
Query: 36 TSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAG 95
T A A P PP+ P + + A PTL S S SE A G
Sbjct: 1595 TPAPATPLPPVPPPAVA---------------AAPPTLDS--TASSLTSYDSEVATLTQG 1637
Query: 96 GTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLP 133
+A P P PP PP P PA+P+P P P P
Sbjct: 1638 ASAA----PGDP--HPPGPPAPAAPAPAAPQPGPDPPP 1669
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 42 PPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRA 101
P PPL P + G+ PT + S + +S + G
Sbjct: 1945 PKPPLPPLPT--------------GTGVSPTAAAAPGATSPSASSSSTSTRHLQGVEFEM 1990
Query: 102 REPPPPLLPPPSPPQ-PGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGG 154
R PP L PSP P + SP P PS LP+L + P P R GG
Sbjct: 1991 R--PPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPGLFDIRGSPTGG 2042
Score = 33.9 bits (76), Expect = 0.079
Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 40 APPPPPLA-PSSSSSSGSSGSSGGGG--SGSAGQPTLGSMLAVGSAARRASERAGGRAGG 96
+PP PP + P SSSG S GG + +G P S A R G R
Sbjct: 927 SPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSREKS 986
Query: 97 TALRAREPPPPLLPP------PSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSR 147
PP PP PPQP P P P +ET P D P R
Sbjct: 987 LYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHP-----PEMETGGSPDDPPPR 1038
Score = 33.9 bits (76), Expect = 0.079
Identities = 45/154 (29%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 3 APPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPP------LAPSSSSSSGS 56
+PP A G G G Q R S R PP P L + +
Sbjct: 1411 SPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAPH 1470
Query: 57 SGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPP---PLLPPPS 113
G S S + +P + R E RA T+ R PP P +PPPS
Sbjct: 1471 PGVSKPWRSAAPEEPERLPLHV------RFLENCQPRAPVTS--GRGPPSEDGPGVPPPS 1522
Query: 114 PPQPGPKGPASPRPL-PSPLPLLETTPFPPDTPS 146
P + P P SPR + LPLL PP PS
Sbjct: 1523 PRRSVPPSPTSPRASEENGLPLL---VLPPPAPS 1553
Score = 30.8 bits (68), Expect = 0.67
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 103 EPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTP 139
+P PL P P P P PA+P P P P P + P
Sbjct: 1579 KPESPLTPGPPHPLPDTPAPATPLP-PVPPPAVAAAP 1614
Score = 28.9 bits (63), Expect = 2.6
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 22 AARRSGVQGG---------QRNSTSARAPPPPPL--APSSSSSSGSSGSSGGGGSGSAGQ 70
AARR G G + NS ++ A P + AP ++SS +SG G
Sbjct: 417 AARRRGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASSGAPGPTSGSQGQSQPSA 476
Query: 71 PTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPP---PS---PPQPGPKG 121
PT + L+ G+ R AS G RA + R R P P PS P+ GP G
Sbjct: 477 PT--TKLSSGT-LRSASSPRGARARSPS-RGRHPEDAKRQPRGRPSSSGTPREGPAG 529
Score = 28.9 bits (63), Expect = 2.6
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGG-G 63
P T ++ + P+ AR G+ + R P P SSS + G +GG G
Sbjct: 477 PTTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRP----SSSGTPREGPAGGTG 532
Query: 64 GSGSAGQPTLGSMLAVGSAARR 85
GSG G GS+ GS RR
Sbjct: 533 GSGGPG----GSL---GSRGRR 547
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 50.8 bits (120), Expect = 6e-07
Identities = 42/151 (27%), Positives = 57/151 (37%), Gaps = 21/151 (13%)
Query: 18 GGPQAARRSGVQG-----------GQRNSTSARAPPPPPLAPSS-----SSSSGSSGSSG 61
G P+ GV+G G++ A+ PP PPL + ++ G +G G
Sbjct: 975 GSPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKGENGDKG 1034
Query: 62 GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPP--PPLLPPPS---PPQ 116
G GS L G + G+ G T + + PP P L PP P
Sbjct: 1035 FKGEKGEKGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPGPPGFGRPGD 1094
Query: 117 PGPKGPASPRPLPSPLPLLETTPFPPDTPSR 147
PGP GP P P+ L P PP P +
Sbjct: 1095 PGPPGPPGPPGPPAILGAAVALPGPPGPPGQ 1125
Score = 42.7 bits (99), Expect = 2e-04
Identities = 38/146 (26%), Positives = 48/146 (32%), Gaps = 28/146 (19%)
Query: 5 PATAATAAGGATGGGPQAARRSG-VQGGQRNSTSARAPPPPPLAPSSSSSSG-------- 55
P A A G G G SG + G ++ PP PP P G
Sbjct: 586 PTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPPGLPGIPGKPGTDVFMGPP 645
Query: 56 -SSGSSGGGGS----GSAGQPTLGSMLAV-------------GSAARRASERAGGRAGGT 97
S G G G G GQP + + GS + G G
Sbjct: 646 GSPGEDGPAGEPGPPGPEGQPGVDGATGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPP 705
Query: 98 ALRAREPPPPLLPPPSPP-QPGPKGP 122
+ + PP ++ PP PP PGP GP
Sbjct: 706 GKKGQAGPPGVMGPPGPPGPPGPPGP 731
Score = 31.6 bits (70), Expect = 0.39
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 31 GQRNSTSARAPPPP----PLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRA 86
G++ P PP P+ P++ + + SG G GS +GS + R
Sbjct: 565 GEKGDAGEELPGPPEPSGPVGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLL-----RG 619
Query: 87 SERAGGRAGGTALRAREPPPPLLPPP-SPPQPGPKG-PASPRPLPSP 131
G G + + + PP SP + GP G P P P P
Sbjct: 620 PPGPPGPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEGQP 666
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLG-SML 77
GP + G PP PP P + G + G G + +P L
Sbjct: 703 GPPGKKGQAGPPGVMGPPGPPGPPGPP-GPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTA 761
Query: 78 AVGSAARRASERAGGRAGGTALRAREPPPPLLPP 111
A+G + G G PP P PP
Sbjct: 762 AIGLKGEKGDRGPKGERGMDGASIVGPPGPRGPP 795
Score = 27.7 bits (60), Expect = 5.7
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 92 GRAGGTALRAREPPPPLLPPPSPPQPGPKGPASP-------RPLPSPLPLLETTPFPPDT 144
GR G L+ + P ++ P PGP GP P + P+P+ P DT
Sbjct: 912 GRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVINIKGAIFPIPVRPHCKMPVDT 971
Score = 26.9 bits (58), Expect = 9.7
Identities = 46/154 (29%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 8 AATAAGGATG--GGPQAARRSGVQGGQRN-STSARAPPPPPLAPSSSSSSGSSGSSGGGG 64
AATAAG A P SGV G+ + S SA++ SS S ++ ++
Sbjct: 409 AATAAGEAEALASMPGEVEASGVAPGELDLSMSAQSLGEEATVGPSSEDSLTTAAAATEV 468
Query: 65 SGS-------AGQPTLGSMLAVGSAARRASERA--GGRAGGTALRAREPPPPLLPPPSPP 115
S S +G PT G A A ERA G L A PL+
Sbjct: 469 SLSTFEDEEASGVPTDG---LAPLTATMAPERAVTSGPGDEEDLAAATTEEPLITA---- 521
Query: 116 QPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQ 149
G + SP P PLPL P TP++R+
Sbjct: 522 --GGEESGSPPPDGPPLPLPTVAPERWITPAQRE 553
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 50.8 bits (120), Expect = 6e-07
Identities = 40/128 (31%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 2 RAPPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
R P + T G P G + +S AP P P P + GSS +G
Sbjct: 158 RPIPGSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTG 216
Query: 62 GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKG 121
GGG+G G G A S GG GG L PP PSPP+PG +
Sbjct: 217 GGGTGGVG----------GGAGSEDSGDRGGTLGGGTLGPPSPP----GAPSPPEPGGEI 262
Query: 122 PASPRPLP 129
RP P
Sbjct: 263 ELVFRPHP 270
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 50.8 bits (120), Expect = 6e-07
Identities = 41/146 (28%), Positives = 53/146 (36%), Gaps = 19/146 (13%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQ----RNSTSARAPPPPPLAPSSSSSSGSSGS 59
PP A G+ P A G+ Q N + PPPPP+ PS+ ++ S
Sbjct: 305 PPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQTAFVS--- 361
Query: 60 SGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGP 119
P M A+ ++ A T L PPPP PPP P PGP
Sbjct: 362 -----------PLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGP 410
Query: 120 KGPASPRPLPSPLPLLETTPFPPDTP 145
S P+ P P+ E P P
Sbjct: 411 GSSLSSSPMHGP-PVAEAKRQEPAQP 435
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 50.4 bits (119), Expect = 8e-07
Identities = 49/170 (28%), Positives = 61/170 (35%), Gaps = 49/170 (28%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
P + A+ G AA R+G + S P PP P+ + + G SG GGG
Sbjct: 34 PSSRASAGPGLCRTEAAAAATRAGA--APATAESPDTPEEPPEEPAPAIAPGGSGGGGGG 91
Query: 64 ----------------GSGSAGQPTLGSMLAV--GSAARRASERAGGRAGGTALRAREP- 104
G+G+A G + A G RR R GGR G A RAR+P
Sbjct: 92 CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPG 151
Query: 105 --------------PPPLLPPPSPP--------------QPGPKGPASPR 126
P L PP PP +P P GPA PR
Sbjct: 152 PDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 50.4 bits (119), Expect = 8e-07
Identities = 49/170 (28%), Positives = 61/170 (35%), Gaps = 49/170 (28%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
P + A+ G AA R+G + S P PP P+ + + G SG GGG
Sbjct: 34 PSSRASAGPGLCRTEAAAAATRAGA--APATAESPDTPEEPPEEPAPAIAPGGSGGGGGG 91
Query: 64 ----------------GSGSAGQPTLGSMLAV--GSAARRASERAGGRAGGTALRAREP- 104
G+G+A G + A G RR R GGR G A RAR+P
Sbjct: 92 CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPG 151
Query: 105 --------------PPPLLPPPSPP--------------QPGPKGPASPR 126
P L PP PP +P P GPA PR
Sbjct: 152 PDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 50.4 bits (119), Expect = 8e-07
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 26/143 (18%)
Query: 14 GATGGGPQAARR-----SGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSA 68
G GGGP + +G GG + PPPP + P + G G
Sbjct: 388 GGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMN-----QGPHPPGHH 442
Query: 69 GQPTLGSMLA---VGSAARRASERAGGRAGGTALRAREPPPPL--LPPPSPPQPGPKGPA 123
G P + L VGS R + G PPPP+ +PPP PP G P
Sbjct: 443 GPPPMDQYLGSTPVGSGVYRLHQGKG----------MMPPPPMGMMPPPPPPPSGQPPPP 492
Query: 124 SPRPLPSPLPLLETTPFPPDTPS 146
PLP P + P PP PS
Sbjct: 493 PSGPLP-PWQQQQQQPPPPPPPS 514
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 32/139 (23%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSS-----SSGSS-- 57
PA+ + +G AT + + R + A PPPP L ++ S +SG S
Sbjct: 326 PASVGSTSGPAT---------TPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSES 376
Query: 58 ----GSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTAL-RAREPPPPLLPPP 112
G GGG G G P S GG G PPPP + PP
Sbjct: 377 RPYHGMHGGGPGGPGGGP--------HSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPP 428
Query: 113 SPPQ---PGPKGPASPRPL 128
PP P P G P P+
Sbjct: 429 PPPMNQGPHPPGHHGPPPM 447
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 50.4 bits (119), Expect = 8e-07
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 26/143 (18%)
Query: 14 GATGGGPQAARR-----SGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSA 68
G GGGP + +G GG + PPPP + P + G G
Sbjct: 388 GGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMN-----QGPHPPGHH 442
Query: 69 GQPTLGSMLA---VGSAARRASERAGGRAGGTALRAREPPPPL--LPPPSPPQPGPKGPA 123
G P + L VGS R + G PPPP+ +PPP PP G P
Sbjct: 443 GPPPMDQYLGSTPVGSGVYRLHQGKG----------MMPPPPMGMMPPPPPPPSGQPPPP 492
Query: 124 SPRPLPSPLPLLETTPFPPDTPS 146
PLP P + P PP PS
Sbjct: 493 PSGPLP-PWQQQQQQPPPPPPPS 514
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 32/139 (23%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSS-----SSGSS-- 57
PA+ + +G AT + + R + A PPPP L ++ S +SG S
Sbjct: 326 PASVGSTSGPAT---------TPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSES 376
Query: 58 ----GSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTAL-RAREPPPPLLPPP 112
G GGG G G P S GG G PPPP + PP
Sbjct: 377 RPYHGMHGGGPGGPGGGP--------HSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPP 428
Query: 113 SPPQ---PGPKGPASPRPL 128
PP P P G P P+
Sbjct: 429 PPPMNQGPHPPGHHGPPPM 447
Score = 38.9 bits (89), Expect = 0.002
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 42 PPPPLAPSSSSSSGS--------SGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGR 93
PPPP PSSS +S + + ++ G+GS P A +A+ A + G
Sbjct: 507 PPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSI--PPWQQQQAAAAASPGAPQMQGNP 564
Query: 94 AGGTALRAREPP--PPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFP 141
+PP P PPP PP PG G P P P E+ FP
Sbjct: 565 TMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMIP-PRGGDGPSHESEDFP 613
Score = 27.3 bits (59), Expect = 7.4
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 4 PPATAATAAGGATGGGPQAARRSGV---QGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
PP AA A+ G PQ + G + APPPPP P S+
Sbjct: 542 PPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMIPPRG 601
Query: 61 GGGGS 65
G G S
Sbjct: 602 GDGPS 606
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 50.4 bits (119), Expect = 8e-07
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 26/143 (18%)
Query: 14 GATGGGPQAARR-----SGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSA 68
G GGGP + +G GG + PPPP + P + G G
Sbjct: 388 GGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMN-----QGPHPPGHH 442
Query: 69 GQPTLGSMLA---VGSAARRASERAGGRAGGTALRAREPPPPL--LPPPSPPQPGPKGPA 123
G P + L VGS R + G PPPP+ +PPP PP G P
Sbjct: 443 GPPPMDQYLGSTPVGSGVYRLHQGKG----------MMPPPPMGMMPPPPPPPSGQPPPP 492
Query: 124 SPRPLPSPLPLLETTPFPPDTPS 146
PLP P + P PP PS
Sbjct: 493 PSGPLP-PWQQQQQQPPPPPPPS 514
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 32/139 (23%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSS-----SSGSS-- 57
PA+ + +G AT + + R + A PPPP L ++ S +SG S
Sbjct: 326 PASVGSTSGPAT---------TPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSES 376
Query: 58 ----GSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTAL-RAREPPPPLLPPP 112
G GGG G G P S GG G PPPP + PP
Sbjct: 377 RPYHGMHGGGPGGPGGGP--------HSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPP 428
Query: 113 SPPQ---PGPKGPASPRPL 128
PP P P G P P+
Sbjct: 429 PPPMNQGPHPPGHHGPPPM 447
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 42 PPPPLAPSSSSSSGS--------SGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGR 93
PPPP PSSS +S + + ++ G+GS P A +A+ A + G
Sbjct: 507 PPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSI--PPWQQQQAAAAASPGAPQMQGNP 564
Query: 94 AGGTALRAREPP--PPLLPPPSPPQPGPKGPASPRPLPSPLPL 134
+PP P PPP PP PG G P P P P+
Sbjct: 565 TMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPM 607
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 50.4 bits (119), Expect = 8e-07
Identities = 29/69 (42%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 88 ERAGGRAGGTA--------LRAREPPPPLLPPPSPPQPGPKGP----ASPRPLPSPLPLL 135
+R A GTA + EPPPP PPP PP P P P ASP P+P P P L
Sbjct: 2 DRGAAAAQGTAPPQDGEQPAESPEPPPPWPPPPPPPAPPPAPPLLSEASPEPIPEPCPEL 61
Query: 136 ETTPFPPDT 144
P P T
Sbjct: 62 APGPCPEAT 70
Score = 40.8 bits (94), Expect = 6e-04
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALR 100
PPPPP AP + S S P LA G SE A T L
Sbjct: 32 PPPPPPAPPPAPPLLSEASP-------EPIPEPCPELAPGPCPEATSESA------TELY 78
Query: 101 AREPPPPLLPPPSPP------QPGPKGPASPRPLPSPLPLLETTPFPPDTPS 146
P P P S P +P P+ P P P+P P E+ P P P+
Sbjct: 79 TEPTPEPATEPASEPAPEPATEPAPEPATEPAPEPAPEPATESAPEPTPEPA 130
Score = 35.0 bits (79), Expect = 0.036
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 95 GGTALRAREPPPPLLPP---PSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTP 145
G A + PP P P PP P P P P P P+P L E +P P P
Sbjct: 4 GAAAAQGTAPPQDGEQPAESPEPPPPWPPPPPPPAPPPAPPLLSEASPEPIPEP 57
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 50.4 bits (119), Expect = 8e-07
Identities = 51/168 (30%), Positives = 61/168 (36%), Gaps = 13/168 (7%)
Query: 3 APPATAATAAGGATGG------GPQAARRSGVQG----GQRNSTSARAPPPPPLAPSSSS 52
A A A A GGA G G AA+ V+ + P S
Sbjct: 25 ARAALARCADGGAVGPFKCVFVGEMAAQVGAVRVVRAVAAQEEPDKEGKEKPHAGVSPRG 84
Query: 53 SSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPP--PPLLP 110
SS GG G+P+ LA RR+ + G A P P LLP
Sbjct: 85 VKRQRRSSSGGSQEKRGRPSQEPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEPLLLP 144
Query: 111 PPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEER 158
PP PP P GPA PLP+P T F P T S + G +ER
Sbjct: 145 PPPPPSLAPAGPAVAAPLPAPSTSALFT-FSPLTVSAAGPKHKGHKER 191
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 50.1 bits (118), Expect = 1e-06
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 15 ATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAG-QPTL 73
A GG +AA ++ GG ++ ARA P S SG G G G+G A + +
Sbjct: 30 AEAGGRRAAHKAS--GGAKHPVPARARDKP-----RGSGSGGGGHRDGRGTGDANHRASS 82
Query: 74 GSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLP 133
G G+ +A G G + + R P P PPP PP P P S P
Sbjct: 83 GRSSGSGAGGGGRGGKASGDPGASGMSPRASPLP--PPPPPPGAEPACPGSSAAAPEYKT 140
Query: 134 LLETTPFPPDTPSRRQDR 151
LL ++ P +DR
Sbjct: 141 LLISSLSPALPAEHLEDR 158
Score = 33.5 bits (75), Expect = 0.10
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 6 ATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
A++ ++G GGG + + SG G S A PPPP P + + S ++
Sbjct: 80 ASSGRSSGSGAGGGGRGGKASGDPGASGMSPRASPLPPPPPPPGAEPACPGSSAA 134
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 53 SSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPP 105
S S SG G S SA +P A R A + +GG RAR+ P
Sbjct: 5 SERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGAKHPVPARARDKP 57
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 49.7 bits (117), Expect = 1e-06
Identities = 42/122 (34%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAV--------GSAARRASERAGG 92
PPPPP P SS S GG+ + P L + G S GG
Sbjct: 604 PPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGG 663
Query: 93 RA-------GGTALRAREPPPPL-----LPPPSPPQPGPKG-PASPRPLPSPLPLLETTP 139
A G+A R PPPPL +PPP PP PG G P P PLP + P
Sbjct: 664 TAIPPPPPLPGSA-RIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPP 722
Query: 140 FP 141
FP
Sbjct: 723 FP 724
Score = 41.2 bits (95), Expect = 5e-04
Identities = 44/162 (27%), Positives = 50/162 (30%), Gaps = 32/162 (19%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
PP G P + + S A PPPPPL S SS G
Sbjct: 606 PPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLP---G 662
Query: 64 GSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPL-----LPPPSPPQPG 118
G+ P L + AG PPPPL +PPP PP PG
Sbjct: 663 GTAIPPPPPLPGSARIPPPPPPLPGSAG---------IPPPPPPLPGEAGMPPPPPPLPG 713
Query: 119 ----------PKGPASPRP-----LPSPLPLLETTPFPPDTP 145
P GP P P +P P P P P P
Sbjct: 714 GPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLP 755
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 104 PPPPLLPPPSPPQPGPKGPASPRPLP-----SPLPLLE---TTPFPPDTP 145
PPPP PPP PP PG +SP LP SP P L T P PP P
Sbjct: 600 PPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLP 649
Score = 35.8 bits (81), Expect = 0.021
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 106 PPLLP-----PPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTP 145
PP +P PP+PP PG G P P P P TTP PP P
Sbjct: 564 PPSVPSRAPVPPAPPLPGDSGTIIP---PPPAPGDSTTPPPPPPP 605
Score = 34.7 bits (78), Expect = 0.046
Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 100 RAREPPPPLLPP------PSPPQPG----PKGPASPRPLPSPLPLLETTPFPPDTP 145
RA PP P LP P PP PG P P P P P PLP PP P
Sbjct: 570 RAPVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLP 625
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/121 (28%), Positives = 40/121 (33%), Gaps = 32/121 (26%)
Query: 37 SARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGG 96
SAR PPPPP P S+ G AG P L GG
Sbjct: 675 SARIPPPPPPLPGSAGIPPPPPPL----PGEAGMPPPPPPLP----------------GG 714
Query: 97 TALRAREPPPPL-----LPPPSP----PQPGPKGPASPRPLPSPLPLLETTPFPPDTPSR 147
+ PPPP +PPP P P P P G P P L + P+ R
Sbjct: 715 PGI---PPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTPKKLYKPEVQLR 771
Query: 148 R 148
R
Sbjct: 772 R 772
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 49.7 bits (117), Expect = 1e-06
Identities = 42/122 (34%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 41 PPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAV--------GSAARRASERAGG 92
PPPPP P SS S GG+ + P L + G S GG
Sbjct: 613 PPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGG 672
Query: 93 RA-------GGTALRAREPPPPL-----LPPPSPPQPGPKG-PASPRPLPSPLPLLETTP 139
A G+A R PPPPL +PPP PP PG G P P PLP + P
Sbjct: 673 TAIPPPPPLPGSA-RIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPP 731
Query: 140 FP 141
FP
Sbjct: 732 FP 733
Score = 41.2 bits (95), Expect = 5e-04
Identities = 44/162 (27%), Positives = 50/162 (30%), Gaps = 32/162 (19%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
PP G P + + S A PPPPPL S SS G
Sbjct: 615 PPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLP---G 671
Query: 64 GSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPL-----LPPPSPPQPG 118
G+ P L + AG PPPPL +PPP PP PG
Sbjct: 672 GTAIPPPPPLPGSARIPPPPPPLPGSAG---------IPPPPPPLPGEAGMPPPPPPLPG 722
Query: 119 ----------PKGPASPRP-----LPSPLPLLETTPFPPDTP 145
P GP P P +P P P P P P
Sbjct: 723 GPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLP 764
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 104 PPPPLLPPPSPPQPGPKGPASPRPLP-----SPLPLLE---TTPFPPDTP 145
PPPP PPP PP PG +SP LP SP P L T P PP P
Sbjct: 609 PPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLP 658
Score = 35.8 bits (81), Expect = 0.021
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 106 PPLLP-----PPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTP 145
PP +P PP+PP PG G P P P P TTP PP P
Sbjct: 573 PPSVPSRAPVPPAPPLPGDSGTIIP---PPPAPGDSTTPPPPPPP 614
Score = 34.7 bits (78), Expect = 0.046
Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 100 RAREPPPPLLPP------PSPPQPG----PKGPASPRPLPSPLPLLETTPFPPDTP 145
RA PP P LP P PP PG P P P P P PLP PP P
Sbjct: 579 RAPVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLP 634
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/121 (28%), Positives = 40/121 (33%), Gaps = 32/121 (26%)
Query: 37 SARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGG 96
SAR PPPPP P S+ G AG P L GG
Sbjct: 684 SARIPPPPPPLPGSAGIPPPPPPL----PGEAGMPPPPPPLP----------------GG 723
Query: 97 TALRAREPPPPL-----LPPPSP----PQPGPKGPASPRPLPSPLPLLETTPFPPDTPSR 147
+ PPPP +PPP P P P P G P P L + P+ R
Sbjct: 724 PGI---PPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTPKKLYKPEVQLR 780
Query: 148 R 148
R
Sbjct: 781 R 781
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 49.7 bits (117), Expect = 1e-06
Identities = 57/182 (31%), Positives = 68/182 (37%), Gaps = 42/182 (23%)
Query: 5 PATAATAAG------GATGG--GPQAARRSGVQGGQ----RNSTSARAPPPPPLAPSSSS 52
P +A +AG G T G P ARRS G + R + SAR P PP P S
Sbjct: 142 PKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSAR-PRPPTEGPRKSV 200
Query: 53 SSGSSGS------------SGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALR 100
SS S S S GGG +L S S+ R+ A G A
Sbjct: 201 SSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHP 260
Query: 101 AREPP-------PPLLPPPSPPQPGPKGPASPRPL----------PSPLPLLETTPFPPD 143
++ P PP + PP GP S PL PS P L+T P PP
Sbjct: 261 SQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPA 320
Query: 144 TP 145
TP
Sbjct: 321 TP 322
Score = 48.9 bits (115), Expect = 2e-06
Identities = 54/195 (27%), Positives = 74/195 (37%), Gaps = 32/195 (16%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPP----PPL------APSSSSS 53
P A A GA G P A R G+ G ++ RA P PP AP + ++
Sbjct: 41 PAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNT 100
Query: 54 SGSSGSSGGGGSGSAGQPTLGS----MLAVGSAARRASERAGGRAGGTALRAREPPPPLL 109
S SS G SG+ LG + A + AR + A R+ +A R+ P
Sbjct: 101 SPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP 160
Query: 110 PPPSP---------------PQPGPKG---PASPRPLPSPLPLLETTPFPPDTPSRRQDR 151
PSP P+P P P + P S E + P +RR+
Sbjct: 161 GTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPS 220
Query: 152 RGGGEERVLLSALSS 166
GGG +R +LSS
Sbjct: 221 AGGGLQRPASRSLSS 235
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/152 (27%), Positives = 54/152 (35%), Gaps = 20/152 (13%)
Query: 1 MRAPPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
++ PP+ A+ A P + V G + A PPPPP SS+ SG +
Sbjct: 532 LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAG 591
Query: 61 GGGGSGSAGQPTLG-SMLAVGSAARRASERAGGRAGGTALRAREPPPPL-------LPPP 112
+ S + G G AA A A A +R P PPL P P
Sbjct: 592 HSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLP 651
Query: 113 SPPQPGP------------KGPASPRPLPSPL 132
PP GP +GP S P P L
Sbjct: 652 WPPATGPGSADGLCTIYETEGPESATPAPGAL 683
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 39 RAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTA 98
+ PP PP +P S S+ A P L + + +A
Sbjct: 441 QVPPSPPASPPMSPSATPPPQ--------APPPLAAPPLQLA----KPPPQAPPALATPP 488
Query: 99 LRAREPPPPLLPPPSPPQPGPKGPASPRPLPSP-------LPLLETTPFPPDTPSRRQDR 151
L+A PP P +P P P SP P P PLL+ P PP +P+ + R
Sbjct: 489 LQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR 548
Query: 152 R 152
R
Sbjct: 549 R 549
Score = 36.6 bits (83), Expect = 0.012
Identities = 41/146 (28%), Positives = 53/146 (36%), Gaps = 20/146 (13%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
PP A A G P A + S APP P PS + +
Sbjct: 278 PPRKDAAPALGPLSSSPLA------------TPSPSAPPSPSAPPSLQTLPSPPATPPSQ 325
Query: 64 GSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGP- 122
+ S G PTL + + + + AL PPL PPSPP P P
Sbjct: 326 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALAL----PPLQAPPSPPASPPLSPL 381
Query: 123 ASPRP-LPSPLP--LLETTPFPPDTP 145
A+P P P+ L LL+ PP +P
Sbjct: 382 ATPSPQAPNALAVHLLQAPFSPPPSP 407
Score = 36.2 bits (82), Expect = 0.016
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 50/134 (37%)
Query: 30 GGQRNSTSARAP------------PPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSML 77
G + +ARAP PPPP+ P++ G++G+ G
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVG---------------- 54
Query: 78 AVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGP----KGPASPRPLPSPLP 133
+ +ERAGG G T P S P+ GP + PAS R +P P
Sbjct: 55 -----RKPLAERAGGIGGATI------------PESAPRAGPTRTSRPPASGRGERAP-P 96
Query: 134 LLETTPFPPDTPSR 147
T+P P +P R
Sbjct: 97 AKNTSPGPVSSPGR 110
Score = 35.0 bits (79), Expect = 0.036
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 106 PPLLPPPSPPQPGPKGPASPRPLPSPLPL----LETTPFPPDTP 145
PPL PPSPP P P++ P +P PL L+ PP P
Sbjct: 438 PPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP 481
Score = 32.3 bits (72), Expect = 0.23
Identities = 38/150 (25%), Positives = 55/150 (36%), Gaps = 23/150 (15%)
Query: 3 APPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGG 62
+PPAT + A + G A S + P PPL+P ++ + +
Sbjct: 317 SPPATPPSQATTSLGSPTLQATHSFL-------------PSPPLSPLATPPPQAPPALAL 363
Query: 63 GGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLP---PPSPPQPGP 119
+ P L S S +A L+A PPP P P SPP P
Sbjct: 364 PPLQAPPSPPASPPL---SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP 420
Query: 120 KGPASPRPLPSP----LPLLETTPFPPDTP 145
P++ P +P P L+ P PP +P
Sbjct: 421 VSPSATPPSQAPPSLAAPPLQVPPSPPASP 450
Score = 31.6 bits (70), Expect = 0.39
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 8 AATAAGGATGGGPQAARRSGVQGGQRNSTS 37
AA A G +GGGP A GV GG R + S
Sbjct: 739 AAEGAAGGSGGGPGGAEGGGVTGGARAALS 768
Score = 31.2 bits (69), Expect = 0.51
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 107 PLLPPPSPPQPGPKGPASPRP---LPSPLPLLETTPFPPDTPSR 147
P PP SP P+ P +P P + P L P PP PSR
Sbjct: 535 PPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSR 578
Score = 26.9 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 84 RRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPL 128
+R +AG A A RA P LL P P P P P +P L
Sbjct: 4 KRDKAKAGAAARTPAARA----PGLLTPRPPGSPRPPPPVTPAAL 44
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 49.7 bits (117), Expect = 1e-06
Identities = 51/165 (30%), Positives = 56/165 (33%), Gaps = 37/165 (22%)
Query: 15 ATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLG 74
A GG A+ +G +G PP PLA G+ GGG G P L
Sbjct: 79 ALGGYSDASFLNGAKGDPEPWPGPE--PPYPLASLHEGLPGTKSGGGGGSGALGGSPVLA 136
Query: 75 SMLA----VGSAA---RRASERAGGRAGG-------TALRAREPPPP---LLPPPSPPQP 117
L G+A A E A G GG A PPPP LL PP PP
Sbjct: 137 GNLPEPLYAGNACGGPSAAPEYAAGYGGGYLAPGYCAQTGAALPPPPPAALLQPPPPPGY 196
Query: 118 GPKGP-----------------ASPRPLPSPLPLLETTPFPPDTP 145
GP P P P P P P L T P TP
Sbjct: 197 GPSAPLYNYPAGGYAAQPGYGALPPPPGPPPAPYL-TPGLPAPTP 240
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 49.7 bits (117), Expect = 1e-06
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 24 RRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAA 83
R S +GG S+S R PPPPP AP S+S+ G G GGGG G G LA +AA
Sbjct: 63 RLSSPRGG---SSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGG--GGHLARTTAA 117
Query: 84 RRA 86
RRA
Sbjct: 118 RRA 120
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 38 ARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGT 97
A APPPPP P+S G G G A A R GG+
Sbjct: 21 APAPPPPPPPPTSGPIGGLRSRHRGSSRGR---------WAAAQAEVAPKTRLSSPRGGS 71
Query: 98 ALRAREPPPPLLPP-PSPPQPGPKGPASPR 126
+ R + PPPP PP S P G +G R
Sbjct: 72 SSRRKPPPPPPAPPSTSAPGRGGRGGGGGR 101
Score = 33.9 bits (76), Expect = 0.079
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 94 AGGTALRAREPPPPLLP-PPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQD 150
A TA+ A P PP+ P PP+PP P P P P P LL T P + R+++
Sbjct: 2644 AQATAVAA--PCPPVTPAPPAPPAPPPSPP--PPPAVQHTGLLSTPTLPAASQKRKRE 2697
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 49.7 bits (117), Expect = 1e-06
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 24 RRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAA 83
R S +GG S+S R PPPPP AP S+S+ G G GGGG G G LA +AA
Sbjct: 63 RLSSPRGG---SSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGG--GGHLARTTAA 117
Query: 84 RRA 86
RRA
Sbjct: 118 RRA 120
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 38 ARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGT 97
A APPPPP P+S G G G A A R GG+
Sbjct: 21 APAPPPPPPPPTSGPIGGLRSRHRGSSRGR---------WAAAQAEVAPKTRLSSPRGGS 71
Query: 98 ALRAREPPPPLLPP-PSPPQPGPKGPASPR 126
+ R + PPPP PP S P G +G R
Sbjct: 72 SSRRKPPPPPPAPPSTSAPGRGGRGGGGGR 101
Score = 33.9 bits (76), Expect = 0.079
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 94 AGGTALRAREPPPPLLP-PPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQD 150
A TA+ A P PP+ P PP+PP P P P P P LL T P + R+++
Sbjct: 2661 AQATAVAA--PCPPVTPAPPAPPAPPPSPP--PPPAVQHTGLLSTPTLPAASQKRKRE 2714
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 49.7 bits (117), Expect = 1e-06
Identities = 52/184 (28%), Positives = 61/184 (33%), Gaps = 45/184 (24%)
Query: 5 PATAATAAGG--ATGGGPQAARRSGVQGGQRNSTSARAPPPPPLA--PSSSSSSGSSGSS 60
P AT +GG T G P + + + A PPPPPL PS + S+
Sbjct: 505 PVAVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQ 564
Query: 61 GGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPL---LPPPSPPQP 117
GS P P PPL LPPP PP P
Sbjct: 565 APPLPGSPEPP--------------------------------PAPPLPGDLPPPPPPPP 592
Query: 118 GPKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSSVREDFVCALPL 177
P G P P P P P PPD RR G G + A ++ F L
Sbjct: 593 PPPGTDGPVP-PPPPPPPPPPGGPPDALGRRDSELGPG-----VKAKKPIQTKFRMPLLN 646
Query: 178 WPAL 181
W AL
Sbjct: 647 WVAL 650
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 95 GGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLP-----LLETTPFPPD 143
G A A +P P PPP P P P P P L L PPD
Sbjct: 2 GNAAGSAEQPAGPAAPPPKQPAP----PKQPMPAAGELEERFNRALNCMNLPPD 51
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 2e-06
Identities = 43/151 (28%), Positives = 55/151 (36%), Gaps = 27/151 (17%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
PP + GGP AA G +G G S PP P +P G +G++G
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 62 GGGS-------GSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSP 114
GS G AGQP G + G+ + G AG T R PP + P
Sbjct: 913 APGSPGVSGPKGDAGQP--GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGS 970
Query: 115 PQP----------------GPKGPASPRPLP 129
P P G +GP P+ LP
Sbjct: 971 PGPQGVKGESGKPGANGLSGERGPPGPQGLP 1001
Score = 48.5 bits (114), Expect = 3e-06
Identities = 44/146 (30%), Positives = 48/146 (32%), Gaps = 20/146 (13%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
PP A GG P +G +G G+R T P P AP + G G G
Sbjct: 769 PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERG 828
Query: 62 -------GGGSGSAGQP----TLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLP 110
GG G AG P G G R S G AG R PP
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG 888
Query: 111 PPSPPQP-------GPKGPASPRPLP 129
P PP P GP GPA P
Sbjct: 889 NPGPPGPSGSPGKDGPPGPAGNTGAP 914
Score = 45.4 bits (106), Expect = 3e-05
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 19 GPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGS-GSAGQPTLGSML 77
GPQ + + G + R PP P P + ++G G G GS G G+ GS
Sbjct: 972 GPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD--GSPG 1029
Query: 78 AVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSP 131
G S A G G PP P+ P G GPA P P P
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPG-----PPGPVGPAGKSGDRGESGPAGPAGAPGP 1078
Score = 43.9 bits (102), Expect = 8e-05
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 4 PPATAATAAGGATGGGPQAAR---RSGVQ-GGQRNSTSARAPPPPPLAPSSSSSSGSSGS 59
PP + G PQ +SGV GG PP PP P +S GS GS
Sbjct: 137 PPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGS 196
Query: 60 SG-------GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPP 112
G G +G +G P G A+G + + GR G R PP + P
Sbjct: 197 PGYQGPPGEPGQAGPSGPP--GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPA 254
Query: 113 S-PPQPGPKG 121
P PG KG
Sbjct: 255 GIPGFPGMKG 264
Score = 42.7 bits (99), Expect = 2e-04
Identities = 41/124 (33%), Positives = 45/124 (36%), Gaps = 23/124 (18%)
Query: 14 GATG-GGPQAAR----RSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGG---- 64
GA G GP+ A R GV GG R P P P S G GS G G
Sbjct: 510 GAPGPAGPRGAAGEPGRDGVPGGP----GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGP 565
Query: 65 ---SGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKG 121
SG GQP G M G + G GG P P PP + GP+G
Sbjct: 566 PGPSGPRGQP--GVMGFPGPKGNDGAPGKNGERGGPG-----GPGPQGPPGKNGETGPQG 618
Query: 122 PASP 125
P P
Sbjct: 619 PPGP 622
Score = 41.6 bits (96), Expect = 4e-04
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 18 GGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSG-GGGSGSAGQPTLG 74
G P +G+ G G+R + R P P P +G G+ G G G+AG+P G
Sbjct: 468 GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEP--G 525
Query: 75 SMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLP 129
G R + G G +P PP S +PGP GP+ PR P
Sbjct: 526 RDGVPGGPGMRGMPGSPGGPGSDG----KPGPPGSQGES-GRPGPPGPSGPRGQP 575
Score = 40.4 bits (93), Expect = 8e-04
Identities = 39/138 (28%), Positives = 46/138 (33%), Gaps = 21/138 (15%)
Query: 3 APPATAATAAGGATGGGPQAARRSGVQGGQRNSTSA---RAPPPPPLAPSSSSSSGSSGS 59
A PA A AG GPQ R + G+R + R P P AP S +G G+
Sbjct: 1070 AGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGA 1129
Query: 60 SGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLL------PPPS 113
G G P VG + + G G PP P S
Sbjct: 1130 IGSPGPAGPRGP-------VGPSGPPGKDGTSGHPGPIG-----PPGPRGNRGERGSEGS 1177
Query: 114 PPQPGPKGPASPRPLPSP 131
P PG GP P P P
Sbjct: 1178 PGHPGQPGPPGPPGAPGP 1195
Score = 40.0 bits (92), Expect = 0.001
Identities = 49/159 (30%), Positives = 54/159 (33%), Gaps = 25/159 (15%)
Query: 3 APPATAATAAGGATG--GGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSS 60
AP A G G G P AA G G R S PP PP S G+ G
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARG-NDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV 353
Query: 61 GGGGS-GSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGP 119
G GS GS G P +R G AG A+ PP PP PG
Sbjct: 354 GPAGSPGSNGAP-----------GQRGEPGPQGHAG-----AQGPPG---PPGINGSPGG 394
Query: 120 KGPASPRPLPSPLPLL--ETTPFPPDTPSRRQDRRGGGE 156
KG P +P L+ P P R G GE
Sbjct: 395 KGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE 433
Score = 38.9 bits (89), Expect = 0.002
Identities = 49/184 (26%), Positives = 56/184 (30%), Gaps = 33/184 (17%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPP---PPPLAPSSSSSSGSSGSSG 61
P T G P +G G A AP PP LA + G+
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703
Query: 62 GGGSGSAGQPTLGSMLAVGSAARRASERAG----------GRAGGTALRA-------REP 104
GG G+AG P ER G G GG R P
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGP 763
Query: 105 PPPLLPPPSPPQPGPKG-------PASPRPLPSPLPLLETTPFP-----PDTPSRRQDRR 152
P+ PP QPG KG P P SP ET P P P P + +
Sbjct: 764 TGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP-PGPAGFPGAPGQNGEPG 822
Query: 153 GGGE 156
G GE
Sbjct: 823 GKGE 826
Score = 36.6 bits (83), Expect = 0.012
Identities = 40/128 (31%), Positives = 45/128 (35%), Gaps = 17/128 (13%)
Query: 18 GGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGS---------- 65
G P G G G AR PP P A + G +G G G+
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER 449
Query: 66 GSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQ--PGPKGPA 123
G AG P G A G + S G A G A E P P+ P PG KGPA
Sbjct: 450 GEAGIP--GVPGAKGEDGKDGSPGEPG-ANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA 506
Query: 124 SPRPLPSP 131
R P P
Sbjct: 507 GERGAPGP 514
Score = 32.0 bits (71), Expect = 0.30
Identities = 43/171 (25%), Positives = 50/171 (29%), Gaps = 30/171 (17%)
Query: 4 PPATAATAAGGATGGGPQAARRSGVQG--GQRNSTSARAPPPPPLAPSSSSSSGSSGSSG 61
PP + G P G G G+R P PP + G G +G
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Query: 62 -GGGSGSAGQPTLGSMLAVGSAARRASERA-----------------GGRAGGTALRARE 103
GG G G P + + E GG+ A R
Sbjct: 625 PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG 684
Query: 104 PP-----PPLLPPPSPPQP-GPKGPASPRPLPSPLPLLETTPFPPDTPSRR 148
PP P L PP P G KG A P P P P TP P R
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGP---PGP-PGAAGTPGLQGMPGER 731
Score = 31.2 bits (69), Expect = 0.51
Identities = 40/146 (27%), Positives = 47/146 (32%), Gaps = 31/146 (21%)
Query: 34 NSTSARAPPPPPLAPSSSSSSGSSGSSGGGGS-GSAGQPTLGSMLAVG---------SAA 83
N + P P P +G G G GS GS G P + G S
Sbjct: 100 NGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYD 159
Query: 84 RRASERAGGRAG--GTALRAREPPPPLL--------------PPPSPPQPGPKGPASPRP 127
++ GG AG G A P PP PP P Q GP GP P
Sbjct: 160 VKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGP-- 217
Query: 128 LPSPLPLLETTPFPPDTPSRRQDRRG 153
P + + P D S R R G
Sbjct: 218 ---PGAIGPSGPAGKDGESGRPGRPG 240
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGG 64
PA A G GP+ G+ ++ P PP + GS GS G G
Sbjct: 1123 PAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPG 1182
Query: 65 S-GSAGQPTLGSMLAVGSAARRASERAGGRAGGTA 98
G G P G A + G +AGG A
Sbjct: 1183 QPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFA 1217
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 48.9 bits (115), Expect = 2e-06
Identities = 47/150 (31%), Positives = 57/150 (38%), Gaps = 37/150 (24%)
Query: 13 GGATGGGPQAARRSGVQG------GQRNSTSARAPPPPP--------LAPSSSSSSGSSG 58
GG GGG AA G G + + A PPP P LA S+ G G
Sbjct: 14 GGGGGGGVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLALDQLSALGLGG 73
Query: 59 SSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPG 118
+ G+AG G+AA AGG GG A P P+ PP P+ G
Sbjct: 74 AGDTDEEGAAGD---------GAAA------AGGADGGAA------PEPV--PPDGPEAG 110
Query: 119 PKGPASPRPLPSPLPLLETTPFPPDTPSRR 148
+P P LPLL+ PP P R
Sbjct: 111 APPTLAPAVAPGSLPLLDPNASPPPPPPPR 140
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 48.9 bits (115), Expect = 2e-06
Identities = 46/166 (27%), Positives = 58/166 (34%), Gaps = 24/166 (14%)
Query: 5 PATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPP----PLAPSSSSSSGSSGSS 60
PA AA + P + SG + + AP P P PS S G G S
Sbjct: 344 PAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGS 403
Query: 61 GGGGSGSAGQPTLG------------SMLAVGSAARRASERAGG-----RAGGTALRARE 103
GGGGS S+ + G S + S A A +GG +A G
Sbjct: 404 GGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHN 463
Query: 104 PPPPLLPPPSPPQP---GPKGPASPRPLPSPLPLLETTPFPPDTPS 146
PPP PS P G P S P L+ PP +P+
Sbjct: 464 PPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSPT 509
Score = 43.9 bits (102), Expect = 8e-05
Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 14/148 (9%)
Query: 2 RAPPATAATAAGGATGGG-------PQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSS 54
R P + GG +GGG A +G Q G + +S A P +A SSS +
Sbjct: 389 RPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGN 448
Query: 55 GSSGSSGGGGSGSAGQPTLGSM---LAVGSAARRASERAGGRAGGTALRAREPPPPLLPP 111
+S + G SG P S A + A + +G +GG +L P P+ PP
Sbjct: 449 NASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLV---PLPVNPP 505
Query: 112 PSPPQPGPKGPASPRPLPSPLPLLETTP 139
SP A+ L P P T P
Sbjct: 506 SSPTPSFSDAKAAGALLNGP-PQFSTAP 532
>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
[Homo sapiens]
Length = 1130
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 4 PPATAATAAGGATGGGPQAARR------SGVQGGQRNSTSARAPPPPPLAPSSSSSSGSS 57
P + A + A G T GP R S G+ +R P PP P++S+
Sbjct: 853 PTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPPAASAGKAGG 912
Query: 58 GSSGGGGSGSAGQPTLGSML-------AVGSAARRASERAGGRAGGTALRAREPPPPLLP 110
S +AG+ LG+ AV S A + S+ G ++P P P
Sbjct: 913 KPSQSPSQEAAGEAVLGAKTKATSLVDAVNSDAAKPSQPGEG--------LKKPVLPATP 964
Query: 111 PPSPPQPGPKGPASPRPLPSPLP 133
P +P P SP P+PS LP
Sbjct: 965 KPQSAKPSGT-PISPAPVPSTLP 986
Score = 31.2 bits (69), Expect = 0.51
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 23 ARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSA 82
A SG+ + + P P + +S SG+ GG G A + +
Sbjct: 825 APASGLPHKEEAGKGSALGTPAAAEPVTPTSKAGSGAPGGTSKGPAEESRV--------R 876
Query: 83 ARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSP 131
+ S + GR G R L P P PP G A +P SP
Sbjct: 877 RHKHSSESPGRDKGKLSR-------LKPAPPPPPAASAGKAGGKPSQSP 918
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,917,537
Number of Sequences: 37866
Number of extensions: 991481
Number of successful extensions: 42773
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1879
Number of HSP's successfully gapped in prelim test: 2053
Number of HSP's that attempted gapping in prelim test: 10742
Number of HSP's gapped (non-prelim): 18479
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.