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Search of human proteins with 239753337
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo sap... 258 9e-70
gi|239741781 PREDICTED: hypothetical protein LOC389043 [Homo sap... 256 3e-69
gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo sapi... 154 2e-38
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 32 0.10
gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo ... 31 0.23
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens] 30 0.67
gi|239755199 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens] 28 2.0
gi|239748870 PREDICTED: similar to hCG2002168 [Homo sapiens] 28 2.0
gi|239742899 PREDICTED: hypothetical protein XP_002342644 [Homo ... 28 2.0
gi|169206056 PREDICTED: similar to FRAS1 related extracellular m... 28 2.6
gi|113424309 PREDICTED: similar to FRAS1 related extracellular m... 28 2.6
gi|113424119 PREDICTED: similar to FRAS1 related extracellular m... 28 2.6
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ... 28 2.6
gi|186659512 calmodulin regulated spectrin-associated protein 1 ... 28 2.6
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 27 3.3
gi|145977222 zinc finger protein 154 [Homo sapiens] 27 3.3
gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 27 4.4
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 27 4.4
gi|29570785 CCCTC-binding factor-like protein [Homo sapiens] 27 4.4
gi|156139122 CXXC finger 6 [Homo sapiens] 26 7.4
gi|109715833 zinc finger protein 565 [Homo sapiens] 26 7.4
gi|109715831 zinc finger protein 565 [Homo sapiens] 26 7.4
gi|5453682 hexamethylene bis-acetamide inducible 1 [Homo sapiens] 26 9.7
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 26 9.7
>gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 128
Score = 258 bits (659), Expect = 9e-70
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP
Sbjct: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
Query: 61 DHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQ 120
DHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQ
Sbjct: 61 DHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQ 120
Query: 121 SLVLQMQK 128
SLVLQMQK
Sbjct: 121 SLVLQMQK 128
>gi|239741781 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 128
Score = 256 bits (654), Expect = 3e-69
Identities = 127/128 (99%), Positives = 127/128 (99%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQDPEGSKESTVR KSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP
Sbjct: 1 MQDPEGSKESTVRHKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
Query: 61 DHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQ 120
DHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQ
Sbjct: 61 DHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQ 120
Query: 121 SLVLQMQK 128
SLVLQMQK
Sbjct: 121 SLVLQMQK 128
>gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 108
Score = 154 bits (388), Expect = 2e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP
Sbjct: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
Query: 61 DHSCVHPGREPSE 73
DHSCVHPGREPSE
Sbjct: 61 DHSCVHPGREPSE 73
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 32.3 bits (72), Expect = 0.10
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 28 LRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP-DHSCVHPGREPSEGTVEIQLLTLASI 86
+R + + V +Q +E + G R + D CV E E EIQLLT AS
Sbjct: 699 IRLKQYHPVVEATQNTESNSNMDCGLTGKRELEVDSQCVRIKTESEEACTEIQLLTTASS 758
Query: 87 RIPDSSGSQTSDNSK 101
P +S + K
Sbjct: 759 SFPPASELNLQQDQK 773
>gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo
sapiens]
Length = 828
Score = 31.2 bits (69), Expect = 0.23
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEGTVEIQLLTLASIRIPDSS 92
HP HP + PS + I L T S P HS +HP P + I LT I DSS
Sbjct: 167 HPPTHPPTHPSIHS-SIHLPTHSSIHPPTHSFIHPSIHPPTHS-PIHPLTHPFIHPSDSS 224
Query: 93 GS 94
+
Sbjct: 225 AA 226
Score = 27.3 bits (59), Expect = 3.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREP 71
HP +HP + PS + I S P HS +HP P
Sbjct: 69 HPPIHPPTHPSIHPL-IHPSIHPSLHPPTHSSIHPSTHP 106
Score = 26.2 bits (56), Expect = 7.4
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEGTV---EIQLLTLASIRIP 89
HP +HP P + S P HS +HP PS + I T +SI P
Sbjct: 85 HPSIHPSLHPPTHSS-----IHPSTHPPTHSSIHPSIHPSTHPLIHPSIHPSTHSSIHPP 139
Query: 90 DSSGSQT 96
S T
Sbjct: 140 THSHPST 146
>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 298
Score = 29.6 bits (65), Expect = 0.67
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 32 PHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPS 72
PHP +HP PS + I T S P H HP PS
Sbjct: 181 PHPSIHPPIHPSTHPL-IHPSTHTSTHPPTHPPTHPPSNPS 220
>gi|239755199 PREDICTED: hypothetical protein [Homo sapiens]
Length = 279
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPS 72
HP +HP + PS L+ S P H HP P+
Sbjct: 140 HPSIHPPTHPSIHASTHPLIHHPSTHPPTHPSTHPSIHPT 179
>gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens]
Length = 127
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 53 TLGSRRIPDHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNS 100
T+ R P+ S H GR+PS+ E L + + D+S Q S S
Sbjct: 66 TIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTES 113
>gi|239748870 PREDICTED: similar to hCG2002168 [Homo sapiens]
Length = 127
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 53 TLGSRRIPDHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNS 100
T+ R P+ S H GR+PS+ E L + + D+S Q S S
Sbjct: 66 TIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTES 113
>gi|239742899 PREDICTED: hypothetical protein XP_002342644 [Homo
sapiens]
Length = 127
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 53 TLGSRRIPDHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNS 100
T+ R P+ S H GR+PS+ E L + + D+S Q S S
Sbjct: 66 TIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTES 113
>gi|169206056 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 38 PGSQPSEGTMEIQLLTLGSRRIPDH-SCVHPG-REPSEGTVEIQLLTLASI 86
P SQP G + + L++L R+P+H + +H G P +VEI + A +
Sbjct: 48 PPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADV 98
>gi|113424309 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 38 PGSQPSEGTMEIQLLTLGSRRIPDH-SCVHPG-REPSEGTVEIQLLTLASI 86
P SQP G + + L++L R+P+H + +H G P +VEI + A +
Sbjct: 48 PPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADV 98
>gi|113424119 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 38 PGSQPSEGTMEIQLLTLGSRRIPDH-SCVHPG-REPSEGTVEIQLLTLASI 86
P SQP G + + L++L R+P+H + +H G P +VEI + A +
Sbjct: 48 PPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADV 98
>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 570
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPS 72
HP+VH + PS + +LL L RIP + + P R S
Sbjct: 8 HPRVHWAAPPSLSSGLHRLLFLRGTRIPSSTTLSPPRHDS 47
>gi|186659512 calmodulin regulated spectrin-associated protein 1 [Homo
sapiens]
Length = 1602
Score = 27.7 bits (60), Expect = 2.6
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 7 SKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVH 66
SK R KS R+ S D +C P +Q L+L S + VH
Sbjct: 1363 SKPKKPRPKSVHREESCSDSGTKCSSTPDNLSRTQSGSS------LSLASAATTEPESVH 1416
Query: 67 PGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQF 115
G PS+ ++ L + S R P S T + + A+ SSL V ++
Sbjct: 1417 SGGTPSQRVESMEALPILS-RNPSRS---TDRDWETASAASSLASVAEY 1461
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 27.3 bits (59), Expect = 3.3
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 67 PGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNSKIATLYSSLFHVCQFKCTSQSLVLQ- 125
P +EP E + E + ++IPD+ Q ++ K L S HV +++C SL +
Sbjct: 1305 PTKEPLEVS-EWNKNSSKDVKIPDTLQDQLNEQQKRQPLSVSDRHVYKYRCNHCSLAFKT 1363
Query: 126 MQK 128
MQK
Sbjct: 1364 MQK 1366
>gi|145977222 zinc finger protein 154 [Homo sapiens]
Length = 437
Score = 27.3 bits (59), Expect = 3.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 31 RPHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEGT 75
R H +VH GS+P E + + T S I H VH G +P E T
Sbjct: 373 RKHQRVHTGSRPYECSECGKSFTQNSGLI-KHRRVHTGEKPYECT 416
>gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 747
Score = 26.9 bits (58), Expect = 4.4
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 3 DPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLL 52
DP G++ T+ ++ + F D + C + HP +G LL
Sbjct: 220 DPRGTRSDTLSPEALLHSGRFEDCLAACSRALEAHPTGSEPQGERRAALL 269
>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 901
Score = 26.9 bits (58), Expect = 4.4
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 3 DPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLL 52
DP G++ T+ ++ + F D + C + HP +G LL
Sbjct: 374 DPRGTRSDTLSPEALLHSGRFEDCLAACSRALEAHPTGSEPQGERRAALL 423
>gi|29570785 CCCTC-binding factor-like protein [Homo sapiens]
Length = 663
Score = 26.9 bits (58), Expect = 4.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 29 RCRPHPQVHPGSQPSE-----------GTMEIQLLTLGSRRIPDHSCVH 66
+ + H + H G +P E GTM+I +L +P + C H
Sbjct: 384 KLKRHMRTHSGEKPYECHICHTRFTQSGTMKIHILQKHGENVPKYQCPH 432
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 26.2 bits (56), Expect = 7.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 9 ESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSR 57
E T+ S ++ +D V C P PQ S+G IQL LGSR
Sbjct: 230 EETLNDTSGSPKMFAQDTV--CAPFPQRATPKVTSQGNPSIQLEELGSR 276
>gi|109715833 zinc finger protein 565 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPG 68
H ++HPG +P E Q LGS+ I +H +H G
Sbjct: 465 HQRIHPGIKPYECRECGQAFILGSQLI-EHYRIHTG 499
>gi|109715831 zinc finger protein 565 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPG 68
H ++HPG +P E Q LGS+ I +H +H G
Sbjct: 465 HQRIHPGIKPYECRECGQAFILGSQLI-EHYRIHTG 499
>gi|5453682 hexamethylene bis-acetamide inducible 1 [Homo sapiens]
Length = 359
Score = 25.8 bits (55), Expect = 9.7
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 4 PEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHS 63
P G++E S + +F L RP P+ EG++E Q L ++ P+ S
Sbjct: 33 PPGAEERVPEEDSRWQSRAFPQ--LGGRPGPE-------GEGSLESQPPPLQTQACPESS 83
Query: 64 CVHPGREPSEG 74
C+ G + G
Sbjct: 84 CLREGEKGQNG 94
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 25.8 bits (55), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 58 RIPDHSCVHPGREPSEG 74
R P SCVH GRE + G
Sbjct: 1080 RAPTQSCVHQGREVASG 1096
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,289,307
Number of Sequences: 37866
Number of extensions: 240103
Number of successful extensions: 703
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 42
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.