Guide to the Human Genome
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Name: LOC650794 Sequence: fasta or formatted (322aa) NCBI GI: 113424119
Description:

PREDICTED: similar to FRAS1 related extracellular matrix protein 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {322aa} PREDICTED: similar to FRAS1 related extracellular matrix protein 2
alt prot {322aa} PREDICTED: similar to FRAS1 related extracellular matrix protein 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         28           2
 C cysteine            1.6          5           1
 D aspartate           3.4         11           2
 E glutamate           7.8         25           2
 F phenylalanine       1.6          5           1
 G glycine             8.4         27           2
 H histidine           2.2          7           1
 I isoleucine          4.0         13           2
 K lysine              3.4         11           1
 L leucine             8.4         27           3
 M methionine          0.6          2           1
 N asparagine          0.9          3           1
 P proline             9.3         30           3
 Q glutamine           4.7         15           1
 R arginine           10.6         34           3
 S serine              9.6         31           2
 T threonine           4.7         15           1
 V valine              7.5         24           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to FRAS1 related extracellular m... 
LOC650794             1.000   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.990   PREDICTED: similar to FRAS1 related extracellular m...
FREM2                 0.119   FRAS1-related extracellular matrix protein 2 precurs...
GRIN2C                0.024   N-methyl-D-aspartate receptor subunit 2C precursor [...
TJAP1                 0.019   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.019   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.019   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.019   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.019   tight junction associated protein 1 isoform a [Homo...
TJAP1                 0.019   tight junction associated protein 1 isoform a [Homo...
SH2B1                 0.016   SH2B adaptor protein 1 isoform 2 
SH2B1                 0.016   SH2B adaptor protein 1 isoform 3 
SH2B1                 0.016   SH2B adaptor protein 1 isoform 2 
SH2B1                 0.016   SH2B adaptor protein 1 isoform 1 
SH2B1                 0.016   SH2B adaptor protein 1 isoform 2 
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
SPRED3                0.015   sprouty-related, EVH1 domain containing 3 isoform a...
E2F4                  0.015   E2F transcription factor 4 
NRG1                  0.013   neuregulin 1 isoform GGF2 
LOC100292370          0.013   PREDICTED: hypothetical protein 
TRIP6                 0.013   thyroid receptor-interacting protein 6 
LMOD1                 0.013   leiomodin 1 (smooth muscle) 
HCN2                  0.013   hyperpolarization activated cyclic nucleotide-gated...
MYO15A                0.013   myosin XV 
RBM20                 0.013   RNA binding motif protein 20 
MAP3K11               0.013   mitogen-activated protein kinase kinase kinase 11 [Ho...
LOC100293662          0.013   PREDICTED: hypothetical protein 
LOC100289444          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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