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Search of human proteins with 239753331
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753331 PREDICTED: hypothetical protein [Homo sapiens] 287 2e-78
gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo ... 287 2e-78
gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo ... 287 2e-78
gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo ... 116 7e-27
gi|169167723 PREDICTED: hypothetical protein [Homo sapiens] 72 2e-13
gi|169168482 PREDICTED: hypothetical protein [Homo sapiens] 72 2e-13
gi|169167540 PREDICTED: hypothetical protein [Homo sapiens] 72 2e-13
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 44 6e-05
gi|83977459 pleckstrin homology-like domain, family A, member 1 ... 40 8e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 40 8e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 40 8e-04
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 39 0.002
gi|94557297 mitogen-activated protein kinase 8 interacting prote... 39 0.002
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|194272140 dendrin [Homo sapiens] 37 0.004
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 37 0.004
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 37 0.005
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 37 0.005
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.005
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 36 0.009
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 36 0.009
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.009
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 35 0.015
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 35 0.015
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 35 0.015
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 35 0.026
gi|169179951 PREDICTED: hypothetical protein [Homo sapiens] 35 0.026
gi|169178983 PREDICTED: hypothetical protein [Homo sapiens] 35 0.026
gi|239743855 PREDICTED: hypothetical protein [Homo sapiens] 35 0.026
>gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 287 bits (734), Expect = 2e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS
Sbjct: 1 MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
Query: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS
Sbjct: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
Query: 121 RLRPQPAPEKGPHSAAGG 138
RLRPQPAPEKGPHSAAGG
Sbjct: 121 RLRPQPAPEKGPHSAAGG 138
>gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo
sapiens]
Length = 138
Score = 287 bits (734), Expect = 2e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS
Sbjct: 1 MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
Query: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS
Sbjct: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
Query: 121 RLRPQPAPEKGPHSAAGG 138
RLRPQPAPEKGPHSAAGG
Sbjct: 121 RLRPQPAPEKGPHSAAGG 138
>gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo
sapiens]
Length = 138
Score = 287 bits (734), Expect = 2e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS
Sbjct: 1 MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
Query: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS
Sbjct: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
Query: 121 RLRPQPAPEKGPHSAAGG 138
RLRPQPAPEKGPHSAAGG
Sbjct: 121 RLRPQPAPEKGPHSAAGG 138
>gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo
sapiens]
Length = 169
Score = 116 bits (290), Expect = 7e-27
Identities = 78/144 (54%), Positives = 85/144 (59%), Gaps = 12/144 (8%)
Query: 1 MEKFSKSLPGPEAQLASPLTGTGCRTS-PHLARALPQPRGSSSQTIKRKRGEARKRRRAA 59
MEKFSKSLPGPEAQ ASPLTG GCRT PHL RAL QPR SSSQTIKRKRGE RKRRRAA
Sbjct: 1 MEKFSKSLPGPEAQPASPLTGAGCRTLLPHLTRALWQPRESSSQTIKRKRGEERKRRRAA 60
Query: 60 SVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTP--AGQRCAQPQLLPAPLSSHF--- 114
+AKDP KR+G G P ++ S P TP P P LS H
Sbjct: 61 IMAKDPAKRDGGLRTG--PSLRSSPAGAEIAPTRTPRWLASAAGSPSFCPR-LSLHTSPR 117
Query: 115 PESRGSRLRPQPAPEKGPHSAAGG 138
E GS L P++ +A GG
Sbjct: 118 AEGAGSGL---SQPQRRALTAQGG 138
>gi|169167723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 71.6 bits (174), Expect = 2e-13
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 61 VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
VA +P KRE ST G P +P R R R+ P G +R AQ +L P P
Sbjct: 2 VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61
Query: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 62 SSHLPASRGSRLRPPPAPERGPHSAAAG 89
>gi|169168482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 71.6 bits (174), Expect = 2e-13
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 61 VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
VA +P KRE ST G P +P R R R+ P G +R AQ +L P P
Sbjct: 2 VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61
Query: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 62 SSHLPASRGSRLRPPPAPERGPHSAAAG 89
>gi|169167540 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 71.6 bits (174), Expect = 2e-13
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 61 VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
VA +P KRE ST G P +P R R R+ P G +R AQ +L P P
Sbjct: 2 VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61
Query: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 62 SSHLPASRGSRLRPPPAPERGPHSAAAG 89
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 43.5 bits (101), Expect = 6e-05
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 9 PGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR 68
P P+ A+PL G G +SP L P + R +R R SV++ P
Sbjct: 758 PAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPP--- 814
Query: 69 EGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQL-LPAPLSSHFPESRG---SRLRP 124
++PP+ P C P PT G Q QL +P P S+ P + G LRP
Sbjct: 815 -------SEPPLHP--CPPPQAP-PTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRP 864
Query: 125 QPAPEKGP 132
Q P +GP
Sbjct: 865 QSQPPEGP 872
Score = 30.8 bits (68), Expect = 0.37
Identities = 40/160 (25%), Positives = 51/160 (31%), Gaps = 32/160 (20%)
Query: 8 LPGPEAQLASPLTGTGCRTSPHLARALPQPRG----SSSQTIKRKRGEARKRRRAASVAK 63
LPG L+S G + PHL L G S S T R ++S A
Sbjct: 1221 LPG-HGPLSSSAPGASTQPPPHLPTKLVIRHGGAGGSPSVTWARASSSLSSSSSSSSAAS 1279
Query: 64 D-PTKREGRSTHGTQPPIKPSRCRDRA-------------------------HPDPTPAG 97
+G +PPIK R R P P PA
Sbjct: 1280 SLDADEDGPMPSRNRPPIKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQPPPPPAT 1339
Query: 98 QRCAQPQLLPAPLSSHFPESRGSRLRPQP-APEKGPHSAA 136
+ A+P P P + G+ P P APE+ P A
Sbjct: 1340 LKVAEPPPRPPPPPPPTGQMNGTVDHPPPAAPERKPLGTA 1379
>gi|83977459 pleckstrin homology-like domain, family A, member 1
[Homo sapiens]
Length = 401
Score = 39.7 bits (91), Expect = 8e-04
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 55 RRRAASVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHF 114
+ R A +A T+++ + QPP +P + + P P P Q QPQ P P
Sbjct: 284 KNRQAILAVKSTRQKQQHLVQQQPPSQPQP-QPQLQPQPQPQPQPQPQPQSQPQPQPQ-- 340
Query: 115 PESRGSRLRPQPAPEKGPHS 134
P+ + +L P P P PHS
Sbjct: 341 PKPQPQQLHPYPHPHPHPHS 360
Score = 28.5 bits (62), Expect = 1.8
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 77 QPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPH 133
QP +P + HP P P + P P P P P P P PH
Sbjct: 340 QPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQIP-------HPHPQPHSQPH 389
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 39.7 bits (91), Expect = 8e-04
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 2 EKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRK--RGEARKRRRAA 59
EK + L A+ + TG + SP ++A+P+P S S+ I E++ +++
Sbjct: 789 EKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRP-ASDSKIISHPGPSSESKGQKQVD 847
Query: 60 SVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRG 119
V K ++ ++ +P KP PTP G R Q +P P S P+ +
Sbjct: 848 PVQKKEEPKKAQTKMSPKPDAKPM-----PKGSPTPPGPRPTAGQTVPTPQQSPKPQEQS 902
Query: 120 SR 121
R
Sbjct: 903 RR 904
Score = 26.9 bits (58), Expect = 5.4
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 7 SLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQ---TIKRKRGEARKRRRAASVAK 63
S P P+ + A P+T T ++++ PQP+ +S + K+ +A + ++ + K
Sbjct: 655 SSPQPKLKTA-PVTTTSA-----VSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPLVK 708
Query: 64 DPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQP 103
PT S QPP S + +P+ ++ P
Sbjct: 709 QPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAP 748
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 39.7 bits (91), Expect = 8e-04
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 2 EKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRK--RGEARKRRRAA 59
EK + L A+ + TG + SP ++A+P+P S S+ I E++ +++
Sbjct: 789 EKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRP-ASDSKIISHPGPSSESKGQKQVD 847
Query: 60 SVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRG 119
V K ++ ++ +P KP PTP G R Q +P P S P+ +
Sbjct: 848 PVQKKEEPKKAQTKMSPKPDAKPM-----PKGSPTPPGPRPTAGQTVPTPQQSPKPQEQS 902
Query: 120 SR 121
R
Sbjct: 903 RR 904
Score = 26.9 bits (58), Expect = 5.4
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 7 SLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQ---TIKRKRGEARKRRRAASVAK 63
S P P+ + A P+T T ++++ PQP+ +S + K+ +A + ++ + K
Sbjct: 655 SSPQPKLKTA-PVTTTSA-----VSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPLVK 708
Query: 64 DPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQP 103
PT S QPP S + +P+ ++ P
Sbjct: 709 QPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAP 748
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 9 PGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR 68
PG + LA +T GC T ++ R+ RG + + + +GE A+ +P++
Sbjct: 831 PGADGVLAG-ITLVGCATRCNVPRSNCSSRGDTP-VLDKGQGEVAT---IANGKVNPSQS 885
Query: 69 EGRSTHGTQPP-----------IKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPES 117
+T T+ P ++P + DP P P P P S + PE
Sbjct: 886 TEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPT------PSSGPQPGSENGPEP 939
Query: 118 RGSRLRPQPAPEKGPHSA 135
S RP+P P P A
Sbjct: 940 DSSSTRPEPEPSGDPTGA 957
>gi|94557297 mitogen-activated protein kinase 8 interacting protein
3 isoform 1 [Homo sapiens]
Length = 1336
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 9 PGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR 68
PG + LA +T GC T ++ R+ RG + + + +GE A+ +P++
Sbjct: 837 PGADGVLAG-ITLVGCATRCNVPRSNCSSRGDTP-VLDKGQGEVAT---IANGKVNPSQS 891
Query: 69 EGRSTHGTQPP-----------IKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPES 117
+T T+ P ++P + DP P P P P S + PE
Sbjct: 892 TEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPT------PSSGPQPGSENGPEP 945
Query: 118 RGSRLRPQPAPEKGPHSA 135
S RP+P P P A
Sbjct: 946 DSSSTRPEPEPSGDPTGA 963
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 27 SPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCR 86
SPH R +P S T + K G+ +EGR +H T P + + R
Sbjct: 102 SPHQERGRSKPSPPVSGTRRGKTGQ---------------WKEGRGSHPTPEPQRLAARR 146
Query: 87 DRAHP-DPTPAGQRCAQPQLLPAPLS----SHFPESRGSRLRPQPAPEK 130
P +PTP G+ A P+ P P S S P RGS P+ PE+
Sbjct: 147 WLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPEQ 195
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 27 SPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCR 86
SPH R +P S T + K G+ +EGR +H T P + + R
Sbjct: 102 SPHQERGRSKPSPPVSGTRRGKTGQ---------------WKEGRGSHPTPEPQRLAARR 146
Query: 87 DRAHP-DPTPAGQRCAQPQLLPAPLS----SHFPESRGSRLRPQPAPEK 130
P +PTP G+ A P+ P P S S P RGS P+ PE+
Sbjct: 147 WLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPEQ 195
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 37.4 bits (85), Expect = 0.004
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 28 PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDP--TKREGRSTHGTQ--PPIKPS 83
P +R L + + + R +++R+AAS ++ T+R+ R G + PP +P
Sbjct: 85 PWASRVLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRP- 143
Query: 84 RCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPHSAAGG 138
P+P A R AQ LPAPL G RP P+ P SA G
Sbjct: 144 ------RPEPRNA-PRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAG 191
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 37.4 bits (85), Expect = 0.004
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 20 TGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPP 79
TG G A+A +P S+ ++ R E + ++ T RST T P
Sbjct: 2374 TGGGTHRRSKKAKAPERPGTRVSERLRGARAETQGANHTPVISAHQT----RSTT-TPPR 2428
Query: 80 IKPSR---CRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPES 117
P+R R P PTPA A P L+P P+S+ P S
Sbjct: 2429 CSPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPIS 2469
Score = 28.5 bits (62), Expect = 1.8
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 8 LPGPEAQL-ASPLTGTGCRTSPHLARALP--QPRGSSSQTIKRKRGEARKRRRAASVAKD 64
+PGPE + A P+ P P +P S KR+RG K R
Sbjct: 2895 VPGPETLIVADPVLEPQLIPGPQPLGPQPVHRPNPLLSPVEKRRRGRPPKARDLPIPGTI 2954
Query: 65 PTKREGRSTHGTQPPIKPS 83
+ +G S TQPP PS
Sbjct: 2955 SSAGDGNSESRTQPPPHPS 2973
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 37.0 bits (84), Expect = 0.005
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 30 LARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTH--GTQPPIKPSRCRD 87
L RALP+ RGS + + + R + P+ R +H ++ P+R
Sbjct: 254 LRRALPE-RGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFC 312
Query: 88 RAHPDPTPA------------GQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPHS 134
A P P P GQ QP+LL A L+ P R P PAP P++
Sbjct: 313 SADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYT 371
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 37.0 bits (84), Expect = 0.005
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 33 ALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHG--TQPPIKPSRCRDRAH 90
ALP+ RGS + + + R + P+ R +H ++ P+R A
Sbjct: 253 ALPE-RGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHALSSERQAAPTRAFCSAD 311
Query: 91 PDPTPA------------GQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPHS 134
P P P GQ QP+LL A L+ P R RP PAP P++
Sbjct: 312 PLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALARGAPRGRTPSPRPGPAPALQPYA 367
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.0 bits (84), Expect = 0.005
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 7 SLPGP----EAQLASPLTGTGCRTSPHLARALP--QPRGSSSQTIKRKRGEARKRRRAAS 60
S P P +A A+P + SP R+ P Q RG + +R R+RRR +
Sbjct: 339 SSPSPRVRDKAAAAAPTPPARGKESPS-PRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Query: 61 VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
+ +R GR PP SR RA + +G P P P S G
Sbjct: 398 SSASAPRRRGRRRPRPAPPRGSSRSLSRAR-SSSDSGSGRGAPGPGPEPGSERGHGGHGK 456
Query: 121 RLRPQP--------APEKGPHSAAGG 138
R + +P +P G H GG
Sbjct: 457 RAKERPPRARPASTSPSPGAHGRRGG 482
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 36.2 bits (82), Expect = 0.009
Identities = 47/160 (29%), Positives = 60/160 (37%), Gaps = 39/160 (24%)
Query: 9 PGPEAQLASP------------LTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRR 56
PGP L P + GC SP +R Q RG++S R AR
Sbjct: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSR---QERGANSPG----RSGARGCG 157
Query: 57 RAASVAKDPTKREGR---STHGTQPP---IKPSRCRDRAHPDPTPAGQRCAQPQLLP--A 108
AA++ ++PT GR GT PP + R P P R A P L P A
Sbjct: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASP-LGPRGA 216
Query: 109 PLSSHFPESRGSRLR-----------PQPAPEKGPHSAAG 137
++ P ++G R R P P P PH AG
Sbjct: 217 GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 36.2 bits (82), Expect = 0.009
Identities = 47/160 (29%), Positives = 60/160 (37%), Gaps = 39/160 (24%)
Query: 9 PGPEAQLASP------------LTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRR 56
PGP L P + GC SP +R Q RG++S R AR
Sbjct: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSR---QERGANSPG----RSGARGCG 157
Query: 57 RAASVAKDPTKREGR---STHGTQPP---IKPSRCRDRAHPDPTPAGQRCAQPQLLP--A 108
AA++ ++PT GR GT PP + R P P R A P L P A
Sbjct: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASP-LGPRGA 216
Query: 109 PLSSHFPESRGSRLR-----------PQPAPEKGPHSAAG 137
++ P ++G R R P P P PH AG
Sbjct: 217 GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.2 bits (82), Expect = 0.009
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 8 LPGPEAQLASPLTGTGCRTSPHL----ARALPQPRGSSSQTIKRKRGEARKRR-RAASVA 62
LP P ++ P TS L +P+P+ S + +K E K R R+ S +
Sbjct: 223 LPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRS 282
Query: 63 KDPTKREGRSTHGTQPPIKPSRCRDRAH-------PDPTPAGQRCAQPQLLPAPLSSHFP 115
K ++ RS T+P + R R R++ P P+ +R P+ +P P
Sbjct: 283 KSRSRTRSRSPSHTRPR-RRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRS 341
Query: 116 ESRGSRLRPQPAPEKGPHSAA 136
S R R A G S++
Sbjct: 342 RSPVRRRRRSSASLSGSSSSS 362
Score = 33.5 bits (75), Expect = 0.057
Identities = 36/148 (24%), Positives = 48/148 (32%), Gaps = 32/148 (21%)
Query: 17 SPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAA----------------S 60
SP R P R P R +R R R+RRR++ S
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369
Query: 61 VAKDPTKREG---RSTHGTQPPIKPSRCRDRAHPDPTPAGQ-------------RCAQPQ 104
K P KR R T P P R R R P TP + R ++
Sbjct: 370 PPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVS 429
Query: 105 LLPAPLSSHFPESRGSRLRPQPAPEKGP 132
+ P S + +G+ R P+P P
Sbjct: 430 VSPGRTSGKVTKHKGTEKRESPSPAPKP 457
Score = 33.5 bits (75), Expect = 0.057
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 4/127 (3%)
Query: 7 SLPGPEAQLASPLTGTGCRTS---PHLARALP-QPRGSSSQTIKRKRGEARKRRRAASVA 62
S P P + ASP R S P R+ P R S S + K ++G + R + +
Sbjct: 616 SPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARS 675
Query: 63 KDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRL 122
P KR S P S R +P ++ P P S PE + +
Sbjct: 676 PQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKK 735
Query: 123 RPQPAPE 129
P+P+
Sbjct: 736 AASPSPQ 742
Score = 32.7 bits (73), Expect = 0.098
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 38 RGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAG 97
R +S KR++ + + RR S + PT+R RS PP R R P P P
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPPPTRRR-RSPSPAPPP------RRRRTPTPPPRR 579
Query: 98 QRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEK 130
+ + P +P + R P P P++
Sbjct: 580 RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR 612
Score = 32.0 bits (71), Expect = 0.17
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 25 RTSPHLARALPQPRGSSSQTIKRKRGEAR--------KRRRAASVAKDPTKREG---RST 73
RT P P+ R S S +R+R A R+ S K P KR R T
Sbjct: 326 RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT 385
Query: 74 HGTQPPIKPSRCRDRAHPDPTPAGQ-------------RCAQPQLLPAPLSSHFPESRGS 120
P P R R R P TP + R ++ + P S + +G+
Sbjct: 386 RRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGT 445
Query: 121 RLR----PQPAPEK 130
R P P P K
Sbjct: 446 EKRESPSPAPKPRK 459
Score = 30.4 bits (67), Expect = 0.49
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 48 KRGEARKRRR---AASVAKDPTKRE------GRSTHGTQPPIKPSRCRDRAHPDPTPAGQ 98
K GE +RRR + S + P KR+ GR PP P+R R P P P +
Sbjct: 513 KNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP--PTRRRRSPSPAPPPRRR 570
Query: 99 RCAQPQLLPAPLSSHFPESRGSRLRPQP 126
R P P P R P P
Sbjct: 571 RTPTP-----PPRRRTPSPPPRRRSPSP 593
Score = 30.4 bits (67), Expect = 0.49
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 33 ALPQPRGSSSQTIKRKRGEAR------KRRRAASVAKDPTKREGRSTHGTQPPIK--PSR 84
A P PR +T R R +RRR+ S A P +R T PP + PS
Sbjct: 529 ASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTP----TPPPRRRTPSP 584
Query: 85 CRDRAHPDP---TPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEK 130
R P P +P QR P P ++ P R P P P++
Sbjct: 585 PPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 633
Score = 28.5 bits (62), Expect = 1.8
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 27 SPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR-------EGRSTHGTQPP 79
SP R P PR S +R +RR AS P +R + R +H P
Sbjct: 583 SPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK 642
Query: 80 IKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAP 128
+ S R P + ++ + P S P R S P P P
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHS---PSPRP 688
Score = 26.6 bits (57), Expect = 7.0
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 28 PHLARALPQPRGSSSQTIKRKRGEARKRR----RAASVAK---DPTKREGRSTHGTQPPI 80
P L A G S ++ K+ E ++R+ + AS+ K D KR+ ++
Sbjct: 107 PLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKR 166
Query: 81 KPSRCRDRAHPDPTPAGQRCAQPQLLPAPLS-SHFPESRGSRLRPQPAPEK 130
+ SR R +P+ +R + P S S P R P PAPEK
Sbjct: 167 ERSRS-PRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEK 216
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 35.4 bits (80), Expect = 0.015
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 28 PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRD 87
P LAR LP + +S + ++R+RG RR + P +R G T PP R
Sbjct: 17 PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG-----PGRRAGAPTPRGPPP------RP 65
Query: 88 RAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSR 121
R+ P+ PA A A SS SRG R
Sbjct: 66 RSFPETGPARLGAA------AGPSSRARPSRGER 93
>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.015
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 28 PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRD 87
P LAR LP + +S + ++R+RG RR + P +R G T PP R
Sbjct: 30 PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG-----PGRRAGAPTPRGPPP------RP 78
Query: 88 RAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSR 121
R+ P+ PA A A SS SRG R
Sbjct: 79 RSFPETGPARLGAA------AGPSSRARPSRGER 106
>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.015
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 28 PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRD 87
P LAR LP + +S + ++R+RG RR + P +R G T PP R
Sbjct: 30 PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG-----PGRRAGAPTPRGPPP------RP 78
Query: 88 RAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSR 121
R+ P+ PA A A SS SRG R
Sbjct: 79 RSFPETGPARLGAA------AGPSSRARPSRGER 106
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 34.7 bits (78), Expect = 0.026
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 20/99 (20%)
Query: 1 MEKFSKSLPGPEAQLASPLTG----TGCRTSPHLARALPQPRGSSS-----------QTI 45
M K+ PGPE ++ TG TG R P + +LP + SS T
Sbjct: 759 MPVLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSSSLPIRQEPSSFRWTTSLEKAATTA 818
Query: 46 KRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSR 84
+RG R RRR+ S GRS H ++P+R
Sbjct: 819 TARRGGLRSRRRSPSPGSQGPAGSGRSGH-----LRPAR 852
>gi|169179951 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.026
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 23/111 (20%)
Query: 39 GSSSQTIKRKRGEARKRRRAASVAKDPTKR---EGRSTHGTQP-----------PIKPSR 84
G SS + R+R EA ++ V+ R G G P P+ PS
Sbjct: 78 GGSSAAVLRRRKEAANSAASSCVSLPGLARPEPSGLKEAGNSPNHNNIREQPRRPLAPSH 137
Query: 85 CRDRAHPDPTPAGQRCAQPQLLPA-----PLSSHFPESRG-SRLRPQPAPE 129
R + TPA +C+Q + A P +S P S SRLRP+PAP+
Sbjct: 138 SRGASR---TPAWVKCSQRRAQGAQGDTSPAASAAPPSAPESRLRPRPAPD 185
>gi|169178983 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.026
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 23/111 (20%)
Query: 39 GSSSQTIKRKRGEARKRRRAASVAKDPTKR---EGRSTHGTQP-----------PIKPSR 84
G SS + R+R EA ++ V+ R G G P P+ PS
Sbjct: 78 GGSSAAVLRRRKEAANSAASSCVSLPGLARPEPSGLKEAGNSPNHNNIREQPRRPLAPSH 137
Query: 85 CRDRAHPDPTPAGQRCAQPQLLPA-----PLSSHFPESRG-SRLRPQPAPE 129
R + TPA +C+Q + A P +S P S SRLRP+PAP+
Sbjct: 138 SRGASR---TPAWVKCSQRRAQGAQGDTSPAASAAPPSAPESRLRPRPAPD 185
>gi|239743855 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.026
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 23/111 (20%)
Query: 39 GSSSQTIKRKRGEARKRRRAASVAKDPTKR---EGRSTHGTQP-----------PIKPSR 84
G SS + R+R EA ++ V+ R G G P P+ PS
Sbjct: 78 GGSSAAVLRRRKEAANSAASSCVSLPGLARPEPSGLKEAGNSPNHNNIREQPRRPLAPSH 137
Query: 85 CRDRAHPDPTPAGQRCAQPQLLPA-----PLSSHFPESRG-SRLRPQPAPE 129
R + TPA +C+Q + A P +S P S SRLRP+PAP+
Sbjct: 138 SRGASR---TPAWVKCSQRRAQGAQGDTSPAASAAPPSAPESRLRPRPAPD 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,777,603
Number of Sequences: 37866
Number of extensions: 480855
Number of successful extensions: 2879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 2471
Number of HSP's gapped (non-prelim): 759
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.