Guide to the Human Genome
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Search of human proteins with 239753331

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]           287   2e-78
gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo ...   287   2e-78
gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo ...   287   2e-78
gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo ...   116   7e-27
gi|169167723 PREDICTED: hypothetical protein [Homo sapiens]            72   2e-13
gi|169168482 PREDICTED: hypothetical protein [Homo sapiens]            72   2e-13
gi|169167540 PREDICTED: hypothetical protein [Homo sapiens]            72   2e-13
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    44   6e-05
gi|83977459 pleckstrin homology-like domain, family A, member 1 ...    40   8e-04
gi|150170670 piccolo isoform 2 [Homo sapiens]                          40   8e-04
gi|150378539 piccolo isoform 1 [Homo sapiens]                          40   8e-04
gi|94557295 mitogen-activated protein kinase 8 interacting prote...    39   0.002
gi|94557297 mitogen-activated protein kinase 8 interacting prote...    39   0.002
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            38   0.003
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            38   0.003
gi|194272140 dendrin [Homo sapiens]                                    37   0.004
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         37   0.004
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]            37   0.005
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ...    37   0.005
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             37   0.005
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]            36   0.009
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]            36   0.009
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         36   0.009
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]            35   0.015
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ...    35   0.015
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ...    35   0.015
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol...    35   0.026
gi|169179951 PREDICTED: hypothetical protein [Homo sapiens]            35   0.026
gi|169178983 PREDICTED: hypothetical protein [Homo sapiens]            35   0.026
gi|239743855 PREDICTED: hypothetical protein [Homo sapiens]            35   0.026

>gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 138

 Score =  287 bits (734), Expect = 2e-78
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
           MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS
Sbjct: 1   MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60

Query: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
           VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS
Sbjct: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120

Query: 121 RLRPQPAPEKGPHSAAGG 138
           RLRPQPAPEKGPHSAAGG
Sbjct: 121 RLRPQPAPEKGPHSAAGG 138


>gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo
           sapiens]
          Length = 138

 Score =  287 bits (734), Expect = 2e-78
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
           MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS
Sbjct: 1   MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60

Query: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
           VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS
Sbjct: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120

Query: 121 RLRPQPAPEKGPHSAAGG 138
           RLRPQPAPEKGPHSAAGG
Sbjct: 121 RLRPQPAPEKGPHSAAGG 138


>gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo
           sapiens]
          Length = 138

 Score =  287 bits (734), Expect = 2e-78
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60
           MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS
Sbjct: 1   MEKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAAS 60

Query: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
           VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS
Sbjct: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120

Query: 121 RLRPQPAPEKGPHSAAGG 138
           RLRPQPAPEKGPHSAAGG
Sbjct: 121 RLRPQPAPEKGPHSAAGG 138


>gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo
           sapiens]
          Length = 169

 Score =  116 bits (290), Expect = 7e-27
 Identities = 78/144 (54%), Positives = 85/144 (59%), Gaps = 12/144 (8%)

Query: 1   MEKFSKSLPGPEAQLASPLTGTGCRTS-PHLARALPQPRGSSSQTIKRKRGEARKRRRAA 59
           MEKFSKSLPGPEAQ ASPLTG GCRT  PHL RAL QPR SSSQTIKRKRGE RKRRRAA
Sbjct: 1   MEKFSKSLPGPEAQPASPLTGAGCRTLLPHLTRALWQPRESSSQTIKRKRGEERKRRRAA 60

Query: 60  SVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTP--AGQRCAQPQLLPAPLSSHF--- 114
            +AKDP KR+G    G  P ++ S       P  TP         P   P  LS H    
Sbjct: 61  IMAKDPAKRDGGLRTG--PSLRSSPAGAEIAPTRTPRWLASAAGSPSFCPR-LSLHTSPR 117

Query: 115 PESRGSRLRPQPAPEKGPHSAAGG 138
            E  GS L     P++   +A GG
Sbjct: 118 AEGAGSGL---SQPQRRALTAQGG 138


>gi|169167723 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 61  VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
           VA +P KRE  ST G      P    +P R R    R+ P     G +R AQ +L P P 
Sbjct: 2   VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61

Query: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
           SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 62  SSHLPASRGSRLRPPPAPERGPHSAAAG 89


>gi|169168482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 61  VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
           VA +P KRE  ST G      P    +P R R    R+ P     G +R AQ +L P P 
Sbjct: 2   VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61

Query: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
           SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 62  SSHLPASRGSRLRPPPAPERGPHSAAAG 89


>gi|169167540 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 61  VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
           VA +P KRE  ST G      P    +P R R    R+ P     G +R AQ +L P P 
Sbjct: 2   VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61

Query: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
           SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 62  SSHLPASRGSRLRPPPAPERGPHSAAAG 89


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 9   PGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR 68
           P P+   A+PL G G  +SP L    P        +    R  +R   R  SV++ P   
Sbjct: 758 PAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPP--- 814

Query: 69  EGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQL-LPAPLSSHFPESRG---SRLRP 124
                  ++PP+ P  C     P PT  G    Q QL +P P S+  P + G     LRP
Sbjct: 815 -------SEPPLHP--CPPPQAP-PTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRP 864

Query: 125 QPAPEKGP 132
           Q  P +GP
Sbjct: 865 QSQPPEGP 872



 Score = 30.8 bits (68), Expect = 0.37
 Identities = 40/160 (25%), Positives = 51/160 (31%), Gaps = 32/160 (20%)

Query: 8    LPGPEAQLASPLTGTGCRTSPHLARALPQPRG----SSSQTIKRKRGEARKRRRAASVAK 63
            LPG    L+S   G   +  PHL   L    G    S S T  R          ++S A 
Sbjct: 1221 LPG-HGPLSSSAPGASTQPPPHLPTKLVIRHGGAGGSPSVTWARASSSLSSSSSSSSAAS 1279

Query: 64   D-PTKREGRSTHGTQPPIKPSRCRDRA-------------------------HPDPTPAG 97
                  +G      +PPIK    R R                           P P PA 
Sbjct: 1280 SLDADEDGPMPSRNRPPIKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQPPPPPAT 1339

Query: 98   QRCAQPQLLPAPLSSHFPESRGSRLRPQP-APEKGPHSAA 136
             + A+P   P P      +  G+   P P APE+ P   A
Sbjct: 1340 LKVAEPPPRPPPPPPPTGQMNGTVDHPPPAAPERKPLGTA 1379


>gi|83977459 pleckstrin homology-like domain, family A, member 1
           [Homo sapiens]
          Length = 401

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 55  RRRAASVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHF 114
           + R A +A   T+++ +     QPP +P   + +  P P P  Q   QPQ  P P     
Sbjct: 284 KNRQAILAVKSTRQKQQHLVQQQPPSQPQP-QPQLQPQPQPQPQPQPQPQSQPQPQPQ-- 340

Query: 115 PESRGSRLRPQPAPEKGPHS 134
           P+ +  +L P P P   PHS
Sbjct: 341 PKPQPQQLHPYPHPHPHPHS 360



 Score = 28.5 bits (62), Expect = 1.8
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 77  QPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPH 133
           QP  +P +     HP P P     + P   P P     P        P P P   PH
Sbjct: 340 QPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQIP-------HPHPQPHSQPH 389


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 2   EKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRK--RGEARKRRRAA 59
           EK +  L    A+ +     TG + SP  ++A+P+P  S S+ I       E++ +++  
Sbjct: 789 EKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRP-ASDSKIISHPGPSSESKGQKQVD 847

Query: 60  SVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRG 119
            V K    ++ ++    +P  KP          PTP G R    Q +P P  S  P+ + 
Sbjct: 848 PVQKKEEPKKAQTKMSPKPDAKPM-----PKGSPTPPGPRPTAGQTVPTPQQSPKPQEQS 902

Query: 120 SR 121
            R
Sbjct: 903 RR 904



 Score = 26.9 bits (58), Expect = 5.4
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 7   SLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQ---TIKRKRGEARKRRRAASVAK 63
           S P P+ + A P+T T       ++++ PQP+ +S +     K+   +A + ++   + K
Sbjct: 655 SSPQPKLKTA-PVTTTSA-----VSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPLVK 708

Query: 64  DPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQP 103
            PT     S    QPP   S  +     +P+   ++   P
Sbjct: 709 QPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAP 748


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 2   EKFSKSLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRK--RGEARKRRRAA 59
           EK +  L    A+ +     TG + SP  ++A+P+P  S S+ I       E++ +++  
Sbjct: 789 EKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRP-ASDSKIISHPGPSSESKGQKQVD 847

Query: 60  SVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRG 119
            V K    ++ ++    +P  KP          PTP G R    Q +P P  S  P+ + 
Sbjct: 848 PVQKKEEPKKAQTKMSPKPDAKPM-----PKGSPTPPGPRPTAGQTVPTPQQSPKPQEQS 902

Query: 120 SR 121
            R
Sbjct: 903 RR 904



 Score = 26.9 bits (58), Expect = 5.4
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 7   SLPGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQ---TIKRKRGEARKRRRAASVAK 63
           S P P+ + A P+T T       ++++ PQP+ +S +     K+   +A + ++   + K
Sbjct: 655 SSPQPKLKTA-PVTTTSA-----VSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPLVK 708

Query: 64  DPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQP 103
            PT     S    QPP   S  +     +P+   ++   P
Sbjct: 709 QPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAP 748


>gi|94557295 mitogen-activated protein kinase 8 interacting protein
           3 isoform 2 [Homo sapiens]
          Length = 1330

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 9   PGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR 68
           PG +  LA  +T  GC T  ++ R+    RG +   + + +GE       A+   +P++ 
Sbjct: 831 PGADGVLAG-ITLVGCATRCNVPRSNCSSRGDTP-VLDKGQGEVAT---IANGKVNPSQS 885

Query: 69  EGRSTHGTQPP-----------IKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPES 117
              +T  T+ P           ++P    +    DP P       P   P P S + PE 
Sbjct: 886 TEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPT------PSSGPQPGSENGPEP 939

Query: 118 RGSRLRPQPAPEKGPHSA 135
             S  RP+P P   P  A
Sbjct: 940 DSSSTRPEPEPSGDPTGA 957


>gi|94557297 mitogen-activated protein kinase 8 interacting protein
           3 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 9   PGPEAQLASPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR 68
           PG +  LA  +T  GC T  ++ R+    RG +   + + +GE       A+   +P++ 
Sbjct: 837 PGADGVLAG-ITLVGCATRCNVPRSNCSSRGDTP-VLDKGQGEVAT---IANGKVNPSQS 891

Query: 69  EGRSTHGTQPP-----------IKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPES 117
              +T  T+ P           ++P    +    DP P       P   P P S + PE 
Sbjct: 892 TEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPT------PSSGPQPGSENGPEP 945

Query: 118 RGSRLRPQPAPEKGPHSA 135
             S  RP+P P   P  A
Sbjct: 946 DSSSTRPEPEPSGDPTGA 963


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 27  SPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCR 86
           SPH  R   +P    S T + K G+                +EGR +H T  P + +  R
Sbjct: 102 SPHQERGRSKPSPPVSGTRRGKTGQ---------------WKEGRGSHPTPEPQRLAARR 146

Query: 87  DRAHP-DPTPAGQRCAQPQLLPAPLS----SHFPESRGSRLRPQPAPEK 130
               P +PTP G+  A P+  P P S    S  P  RGS   P+  PE+
Sbjct: 147 WLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPEQ 195


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 27  SPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCR 86
           SPH  R   +P    S T + K G+                +EGR +H T  P + +  R
Sbjct: 102 SPHQERGRSKPSPPVSGTRRGKTGQ---------------WKEGRGSHPTPEPQRLAARR 146

Query: 87  DRAHP-DPTPAGQRCAQPQLLPAPLS----SHFPESRGSRLRPQPAPEK 130
               P +PTP G+  A P+  P P S    S  P  RGS   P+  PE+
Sbjct: 147 WLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPEQ 195


>gi|194272140 dendrin [Homo sapiens]
          Length = 711

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 28  PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDP--TKREGRSTHGTQ--PPIKPS 83
           P  +R L +     +  +   R   +++R+AAS  ++   T+R+ R   G +  PP +P 
Sbjct: 85  PWASRVLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRP- 143

Query: 84  RCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPHSAAGG 138
                  P+P  A  R AQ   LPAPL        G   RP   P+  P SA  G
Sbjct: 144 ------RPEPRNA-PRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAG 191


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 20   TGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPP 79
            TG G       A+A  +P    S+ ++  R E +       ++   T    RST  T P 
Sbjct: 2374 TGGGTHRRSKKAKAPERPGTRVSERLRGARAETQGANHTPVISAHQT----RSTT-TPPR 2428

Query: 80   IKPSR---CRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPES 117
              P+R    R    P PTPA    A P L+P P+S+  P S
Sbjct: 2429 CSPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPIS 2469



 Score = 28.5 bits (62), Expect = 1.8
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 8    LPGPEAQL-ASPLTGTGCRTSPHLARALP--QPRGSSSQTIKRKRGEARKRRRAASVAKD 64
            +PGPE  + A P+        P      P  +P    S   KR+RG   K R        
Sbjct: 2895 VPGPETLIVADPVLEPQLIPGPQPLGPQPVHRPNPLLSPVEKRRRGRPPKARDLPIPGTI 2954

Query: 65   PTKREGRSTHGTQPPIKPS 83
             +  +G S   TQPP  PS
Sbjct: 2955 SSAGDGNSESRTQPPPHPS 2973


>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 402

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 30  LARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTH--GTQPPIKPSRCRD 87
           L RALP+ RGS + + +      R       +   P+ R    +H   ++    P+R   
Sbjct: 254 LRRALPE-RGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFC 312

Query: 88  RAHPDPTPA------------GQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPHS 134
            A P P P             GQ   QP+LL A L+   P  R     P PAP   P++
Sbjct: 313 SADPLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYT 371


>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
           sapiens]
          Length = 398

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 33  ALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHG--TQPPIKPSRCRDRAH 90
           ALP+ RGS + + +      R       +   P+ R    +H   ++    P+R    A 
Sbjct: 253 ALPE-RGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHALSSERQAAPTRAFCSAD 311

Query: 91  PDPTPA------------GQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEKGPHS 134
           P P P             GQ   QP+LL A L+   P  R    RP PAP   P++
Sbjct: 312 PLPRPPSFVPSLPSPQAQGQAVRQPRLLRAALARGAPRGRTPSPRPGPAPALQPYA 367


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 7   SLPGP----EAQLASPLTGTGCRTSPHLARALP--QPRGSSSQTIKRKRGEARKRRRAAS 60
           S P P    +A  A+P      + SP   R+ P  Q RG  +     +R   R+RRR + 
Sbjct: 339 SSPSPRVRDKAAAAAPTPPARGKESPS-PRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397

Query: 61  VAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGS 120
            +    +R GR      PP   SR   RA    + +G     P   P P S       G 
Sbjct: 398 SSASAPRRRGRRRPRPAPPRGSSRSLSRAR-SSSDSGSGRGAPGPGPEPGSERGHGGHGK 456

Query: 121 RLRPQP--------APEKGPHSAAGG 138
           R + +P        +P  G H   GG
Sbjct: 457 RAKERPPRARPASTSPSPGAHGRRGG 482


>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 47/160 (29%), Positives = 60/160 (37%), Gaps = 39/160 (24%)

Query: 9   PGPEAQLASP------------LTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRR 56
           PGP   L  P             +  GC  SP  +R   Q RG++S      R  AR   
Sbjct: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSR---QERGANSPG----RSGARGCG 157

Query: 57  RAASVAKDPTKREGR---STHGTQPP---IKPSRCRDRAHPDPTPAGQRCAQPQLLP--A 108
            AA++ ++PT   GR      GT PP   +     R    P   P   R A P L P  A
Sbjct: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASP-LGPRGA 216

Query: 109 PLSSHFPESRGSRLR-----------PQPAPEKGPHSAAG 137
            ++   P ++G R R           P P P   PH  AG
Sbjct: 217 GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256


>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 47/160 (29%), Positives = 60/160 (37%), Gaps = 39/160 (24%)

Query: 9   PGPEAQLASP------------LTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRR 56
           PGP   L  P             +  GC  SP  +R   Q RG++S      R  AR   
Sbjct: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSR---QERGANSPG----RSGARGCG 157

Query: 57  RAASVAKDPTKREGR---STHGTQPP---IKPSRCRDRAHPDPTPAGQRCAQPQLLP--A 108
            AA++ ++PT   GR      GT PP   +     R    P   P   R A P L P  A
Sbjct: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASP-LGPRGA 216

Query: 109 PLSSHFPESRGSRLR-----------PQPAPEKGPHSAAG 137
            ++   P ++G R R           P P P   PH  AG
Sbjct: 217 GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 8   LPGPEAQLASPLTGTGCRTSPHL----ARALPQPRGSSSQTIKRKRGEARKRR-RAASVA 62
           LP P  ++  P       TS  L       +P+P+  S +   +K  E  K R R+ S +
Sbjct: 223 LPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRS 282

Query: 63  KDPTKREGRSTHGTQPPIKPSRCRDRAH-------PDPTPAGQRCAQPQLLPAPLSSHFP 115
           K  ++   RS   T+P  +  R R R++       P   P+ +R   P+ +P P      
Sbjct: 283 KSRSRTRSRSPSHTRPR-RRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRS 341

Query: 116 ESRGSRLRPQPAPEKGPHSAA 136
            S   R R   A   G  S++
Sbjct: 342 RSPVRRRRRSSASLSGSSSSS 362



 Score = 33.5 bits (75), Expect = 0.057
 Identities = 36/148 (24%), Positives = 48/148 (32%), Gaps = 32/148 (21%)

Query: 17  SPLTGTGCRTSPHLARALPQPRGSSSQTIKRKRGEARKRRRAA----------------S 60
           SP      R  P   R  P  R       +R R   R+RRR++                S
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369

Query: 61  VAKDPTKREG---RSTHGTQPPIKPSRCRDRAHPDPTPAGQ-------------RCAQPQ 104
             K P KR     R T    P   P R R R  P  TP  +             R ++  
Sbjct: 370 PPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVS 429

Query: 105 LLPAPLSSHFPESRGSRLRPQPAPEKGP 132
           + P   S    + +G+  R  P+P   P
Sbjct: 430 VSPGRTSGKVTKHKGTEKRESPSPAPKP 457



 Score = 33.5 bits (75), Expect = 0.057
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 7   SLPGPEAQLASPLTGTGCRTS---PHLARALP-QPRGSSSQTIKRKRGEARKRRRAASVA 62
           S P P  + ASP      R S   P   R+ P   R S S + K ++G +  R    + +
Sbjct: 616 SPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARS 675

Query: 63  KDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRL 122
             P KR   S     P    S    R     +P  ++   P   P    S  PE +  + 
Sbjct: 676 PQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKK 735

Query: 123 RPQPAPE 129
              P+P+
Sbjct: 736 AASPSPQ 742



 Score = 32.7 bits (73), Expect = 0.098
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 38  RGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRDRAHPDPTPAG 97
           R +S    KR++  + + RR  S +  PT+R  RS     PP      R R  P P P  
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPPPTRRR-RSPSPAPPP------RRRRTPTPPPRR 579

Query: 98  QRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEK 130
           +  + P    +P    +      R  P P P++
Sbjct: 580 RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR 612



 Score = 32.0 bits (71), Expect = 0.17
 Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 28/134 (20%)

Query: 25  RTSPHLARALPQPRGSSSQTIKRKRGEAR--------KRRRAASVAKDPTKREG---RST 73
           RT P      P+ R S S   +R+R  A            R+ S  K P KR     R T
Sbjct: 326 RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT 385

Query: 74  HGTQPPIKPSRCRDRAHPDPTPAGQ-------------RCAQPQLLPAPLSSHFPESRGS 120
               P   P R R R  P  TP  +             R ++  + P   S    + +G+
Sbjct: 386 RRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGT 445

Query: 121 RLR----PQPAPEK 130
             R    P P P K
Sbjct: 446 EKRESPSPAPKPRK 459



 Score = 30.4 bits (67), Expect = 0.49
 Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 16/88 (18%)

Query: 48  KRGEARKRRR---AASVAKDPTKRE------GRSTHGTQPPIKPSRCRDRAHPDPTPAGQ 98
           K GE  +RRR   + S +  P KR+      GR      PP  P+R R    P P P  +
Sbjct: 513 KNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP--PTRRRRSPSPAPPPRRR 570

Query: 99  RCAQPQLLPAPLSSHFPESRGSRLRPQP 126
           R   P     P     P     R  P P
Sbjct: 571 RTPTP-----PPRRRTPSPPPRRRSPSP 593



 Score = 30.4 bits (67), Expect = 0.49
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 33  ALPQPRGSSSQTIKRKRGEAR------KRRRAASVAKDPTKREGRSTHGTQPPIK--PSR 84
           A P PR    +T  R R          +RRR+ S A  P +R       T PP +  PS 
Sbjct: 529 ASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTP----TPPPRRRTPSP 584

Query: 85  CRDRAHPDP---TPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAPEK 130
              R  P P   +P  QR   P   P   ++  P     R  P P P++
Sbjct: 585 PPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 633



 Score = 28.5 bits (62), Expect = 1.8
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 27  SPHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKR-------EGRSTHGTQPP 79
           SP   R  P PR  S    +R       +RR AS    P +R       + R +H   P 
Sbjct: 583 SPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK 642

Query: 80  IKPSRCRDRAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSRLRPQPAP 128
            + S    R  P  +   ++ + P        S  P  R S   P P P
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHS---PSPRP 688



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 28  PHLARALPQPRGSSSQTIKRKRGEARKRR----RAASVAK---DPTKREGRSTHGTQPPI 80
           P L  A     G  S  ++ K+ E ++R+    + AS+ K   D  KR+      ++   
Sbjct: 107 PLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKR 166

Query: 81  KPSRCRDRAHPDPTPAGQRCAQPQLLPAPLS-SHFPESRGSRLRPQPAPEK 130
           + SR   R     +P+ +R + P       S S  P  R     P PAPEK
Sbjct: 167 ERSRS-PRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEK 216


>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 28  PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRD 87
           P LAR LP  + +S + ++R+RG    RR +      P +R G  T    PP      R 
Sbjct: 17  PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG-----PGRRAGAPTPRGPPP------RP 65

Query: 88  RAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSR 121
           R+ P+  PA    A      A  SS    SRG R
Sbjct: 66  RSFPETGPARLGAA------AGPSSRARPSRGER 93


>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
           sapiens]
          Length = 159

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 28  PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRD 87
           P LAR LP  + +S + ++R+RG    RR +      P +R G  T    PP      R 
Sbjct: 30  PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG-----PGRRAGAPTPRGPPP------RP 78

Query: 88  RAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSR 121
           R+ P+  PA    A      A  SS    SRG R
Sbjct: 79  RSFPETGPARLGAA------AGPSSRARPSRGER 106


>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
           sapiens]
          Length = 159

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 28  PHLARALPQPRGSSSQTIKRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSRCRD 87
           P LAR LP  + +S + ++R+RG    RR +      P +R G  T    PP      R 
Sbjct: 30  PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG-----PGRRAGAPTPRGPPP------RP 78

Query: 88  RAHPDPTPAGQRCAQPQLLPAPLSSHFPESRGSR 121
           R+ P+  PA    A      A  SS    SRG R
Sbjct: 79  RSFPETGPARLGAA------AGPSSRARPSRGER 106


>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1b
           [Homo sapiens]
          Length = 867

 Score = 34.7 bits (78), Expect = 0.026
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 1   MEKFSKSLPGPEAQLASPLTG----TGCRTSPHLARALPQPRGSSS-----------QTI 45
           M    K+ PGPE ++    TG    TG R  P  + +LP  +  SS            T 
Sbjct: 759 MPVLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSSSLPIRQEPSSFRWTTSLEKAATTA 818

Query: 46  KRKRGEARKRRRAASVAKDPTKREGRSTHGTQPPIKPSR 84
             +RG  R RRR+ S         GRS H     ++P+R
Sbjct: 819 TARRGGLRSRRRSPSPGSQGPAGSGRSGH-----LRPAR 852


>gi|169179951 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 34.7 bits (78), Expect = 0.026
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 23/111 (20%)

Query: 39  GSSSQTIKRKRGEARKRRRAASVAKDPTKR---EGRSTHGTQP-----------PIKPSR 84
           G SS  + R+R EA     ++ V+     R    G    G  P           P+ PS 
Sbjct: 78  GGSSAAVLRRRKEAANSAASSCVSLPGLARPEPSGLKEAGNSPNHNNIREQPRRPLAPSH 137

Query: 85  CRDRAHPDPTPAGQRCAQPQLLPA-----PLSSHFPESRG-SRLRPQPAPE 129
            R  +    TPA  +C+Q +   A     P +S  P S   SRLRP+PAP+
Sbjct: 138 SRGASR---TPAWVKCSQRRAQGAQGDTSPAASAAPPSAPESRLRPRPAPD 185


>gi|169178983 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 34.7 bits (78), Expect = 0.026
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 23/111 (20%)

Query: 39  GSSSQTIKRKRGEARKRRRAASVAKDPTKR---EGRSTHGTQP-----------PIKPSR 84
           G SS  + R+R EA     ++ V+     R    G    G  P           P+ PS 
Sbjct: 78  GGSSAAVLRRRKEAANSAASSCVSLPGLARPEPSGLKEAGNSPNHNNIREQPRRPLAPSH 137

Query: 85  CRDRAHPDPTPAGQRCAQPQLLPA-----PLSSHFPESRG-SRLRPQPAPE 129
            R  +    TPA  +C+Q +   A     P +S  P S   SRLRP+PAP+
Sbjct: 138 SRGASR---TPAWVKCSQRRAQGAQGDTSPAASAAPPSAPESRLRPRPAPD 185


>gi|239743855 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 34.7 bits (78), Expect = 0.026
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 23/111 (20%)

Query: 39  GSSSQTIKRKRGEARKRRRAASVAKDPTKR---EGRSTHGTQP-----------PIKPSR 84
           G SS  + R+R EA     ++ V+     R    G    G  P           P+ PS 
Sbjct: 78  GGSSAAVLRRRKEAANSAASSCVSLPGLARPEPSGLKEAGNSPNHNNIREQPRRPLAPSH 137

Query: 85  CRDRAHPDPTPAGQRCAQPQLLPA-----PLSSHFPESRG-SRLRPQPAPE 129
            R  +    TPA  +C+Q +   A     P +S  P S   SRLRP+PAP+
Sbjct: 138 SRGASR---TPAWVKCSQRRAQGAQGDTSPAASAAPPSAPESRLRPRPAPD 185


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.129    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,777,603
Number of Sequences: 37866
Number of extensions: 480855
Number of successful extensions: 2879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 2471
Number of HSP's gapped (non-prelim): 759
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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