Guide to the Human Genome
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Name: LOC100131414 Sequence: fasta or formatted (196aa) NCBI GI: 169178983
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {196aa} PREDICTED: hypothetical protein
alt mRNA {196aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         30           2
 C cysteine            1.5          3           1
 D aspartate           2.0          4           1
 E glutamate           5.1         10           1
 F phenylalanine       0.5          1           1
 G glycine            11.2         22           4
 H histidine           2.0          4           1
 I isoleucine          3.1          6           1
 K lysine              4.1          8           1
 L leucine             6.6         13           2
 M methionine          0.5          1           1
 N asparagine          2.6          5           2
 P proline            12.2         24           2
 Q glutamine           4.1          8           2
 R arginine           12.8         25           3
 S serine              9.7         19           2
 T threonine           3.1          6           1
 V valine              2.6          5           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131414          1.000   PREDICTED: hypothetical protein 
LOC100131414          1.000   PREDICTED: hypothetical protein 
LOC100130174          0.051   PREDICTED: hypothetical protein 
LOC100130174          0.051   PREDICTED: hypothetical protein 
SPEG                  0.040   SPEG complex locus 
LOC100130174          0.038   PREDICTED: hypothetical protein 
LOC100292370          0.035   PREDICTED: hypothetical protein 
KIFC2                 0.035   kinesin family member C2 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
ARID1A                0.032   AT rich interactive domain 1A isoform a 
ARID1A                0.032   AT rich interactive domain 1A isoform b 
RP1L1                 0.029   retinitis pigmentosa 1-like 1 
PPP1R3G               0.029   protein phosphatase 1, regulatory (inhibitor) subun...
LOC100289661          0.029   PREDICTED: hypothetical protein 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
LOC643355             0.029   PREDICTED: hypothetical protein 
LOC100289661          0.029   PREDICTED: hypothetical protein XP_002343723 
LOC643355             0.029   PREDICTED: hypothetical protein 
HCN4                  0.027   hyperpolarization activated cyclic nucleotide-gated p...
AMOTL2                0.027   angiomotin like 2 
LOC100293254          0.027   PREDICTED: hypothetical protein 
LOC100289377          0.027   PREDICTED: hypothetical protein 
LOC100289377          0.027   PREDICTED: hypothetical protein XP_002343119 
UMODL1                0.027   uromodulin-like 1 isoform 2 precursor 
LOC100293961          0.027   PREDICTED: hypothetical protein 
LOC100290753          0.027   PREDICTED: hypothetical protein XP_002346471 
LOC100289293          0.027   PREDICTED: hypothetical protein XP_002342302 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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