Guide to the Human Genome
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Name: LOC100128382 Sequence: fasta or formatted (89aa) NCBI GI: 169167723
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {89aa} PREDICTED: hypothetical protein
alt mRNA {89aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         11           3
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           3.4          3           1
 F phenylalanine       2.2          2           1
 G glycine            10.1          9           1
 H histidine           2.2          2           1
 I isoleucine          0.0          0           0
 K lysine              1.1          1           1
 L leucine             6.7          6           1
 M methionine          1.1          1           1
 N asparagine          2.2          2           2
 P proline            13.5         12           3
 Q glutamine           5.6          5           1
 R arginine           19.1         17           2
 S serine             13.5         12           2
 T threonine           2.2          2           1
 V valine              3.4          3           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128382          1.000   PREDICTED: hypothetical protein 
LOC100128382          1.000   PREDICTED: hypothetical protein 
LOC100293961          0.299   PREDICTED: hypothetical protein 
LOC100290753          0.299   PREDICTED: hypothetical protein XP_002346471 
LOC100289293          0.299   PREDICTED: hypothetical protein XP_002342302 
ADAMTS19              0.083   ADAM metallopeptidase with thrombospondin type 1 mo...
FLJ37078              0.076   hypothetical protein LOC222183 
LOC100289721          0.051   PREDICTED: hypothetical protein XP_002347280 
SFRS2                 0.051   splicing factor, arginine/serine-rich 2 
LOC100291136          0.045   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.045   PREDICTED: hypothetical protein XP_002343480 
LOC644246             0.045   PREDICTED: hypothetical protein LOC644246 
CDAN1                 0.045   codanin 1 
MAST3                 0.045   microtubule associated serine/threonine kinase 3 [H...
KIF26B                0.045   kinesin family member 26B 
MAST1                 0.038   microtubule associated serine/threonine kinase 1 [Ho...
LOC100292143          0.038   PREDICTED: hypothetical protein 
LOC100292865          0.032   PREDICTED: hypothetical protein 
LOC100290859          0.032   PREDICTED: hypothetical protein XP_002346523 
LOC100288572          0.032   PREDICTED: hypothetical protein XP_002342361 
ST6GALNAC1            0.032   sialyltransferase 7A 
CABIN1                0.032   calcineurin binding protein 1 
LOC283999             0.032   hypothetical protein LOC283999 
FLJ31945              0.032   PREDICTED: hypothetical protein 
LOC100294444          0.032   PREDICTED: similar to family with sequence similari...
LOC100288017          0.032   PREDICTED: hypothetical protein XP_002343778 
FAM48B2               0.032   family with sequence similarity 48, member B2 [Homo...
SNAPC4                0.032   small nuclear RNA activating complex, polypeptide 4,...
MBD6                  0.032   methyl-CpG binding domain protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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