Search of human proteins with 239752966

Search of human proteins with 239752966

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]           261   1e-70
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      36   0.006
gi|239757317 PREDICTED: hypothetical protein [Homo sapiens]            36   0.007
gi|7662302 TBK1 binding protein 1 [Homo sapiens]                       35   0.013
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H...    34   0.022
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    34   0.022
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    34   0.022
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ...    34   0.022
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ...    34   0.022
gi|95147555 microtubule-associated protein 1A [Homo sapiens]           34   0.022
gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           33   0.037
gi|153792074 proline rich 12 [Homo sapiens]                            33   0.037
gi|42544177 complement component (3d/Epstein Barr virus) recepto...    33   0.063
gi|54792123 complement component (3d/Epstein Barr virus) recepto...    33   0.063
gi|105990541 ATP-binding cassette, sub-family A member 4 [Homo s...    33   0.063
gi|112363080 microtubule associated serine/threonine kinase 2 [H...    32   0.082
gi|188536004 zinc finger protein 469 [Homo sapiens]                    32   0.11 
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]        32   0.11 
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         32   0.11 
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]                  32   0.11 
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo...    32   0.14 
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans...    32   0.14 
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ...    32   0.14 
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans...    32   0.14 
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ...    32   0.14 
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom...    32   0.14 

>gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  261 bits (666), Expect = 1e-70
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MEKRRWFCRRWNCTPGESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLC 60
           MEKRRWFCRRWNCTPGESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLC
Sbjct: 1   MEKRRWFCRRWNCTPGESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLC 60

Query: 61  PEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGCGAG 117
           PEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGCGAG
Sbjct: 61  PEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGCGAG 117


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 16  GESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCS 75
           G + P   P   G++     GG  PRG +  + R     P  P  P GEKGSP       
Sbjct: 890 GNAGPPGPPGPAGKE-----GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944

Query: 76  SPKASG-EGVGGEGKVTGECLVGGRG 100
           +P   G +G+ G+  V G  L G RG
Sbjct: 945 APGTPGPQGIAGQRGVVG--LPGQRG 968



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 15  PGESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPP---P 71
           PG       P   GE+ +    G++  GP+ K      Q P  P  P GE+G   P   P
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAV--GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 640

Query: 72  ALCSSPKASG----EGVGGEGKVTGE 93
                P  +G     G  GE  V G+
Sbjct: 641 GFQGLPGPAGPPGEAGKPGEQGVPGD 666


>gi|239757317 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 198

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 59  LCPEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGCGAG 117
           L P G  G       C +  A G G GG GKV     VGG G  WA+ P + S   G G
Sbjct: 131 LRPVGYPGGGESGTTCGAATA-GTGPGGRGKVAA---VGGPGTTWARGPRTSSPRAGPG 185


>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
          Length = 615

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 14  TPGESCPGSSPLSVGEKVLHSCGGSLPRG-----PSCKSKRDRRQLPSLPLCPEGEKGSP 68
           +P   CP  SP         SC   +P+      PSC+S   +R+ P  P CP  +   P
Sbjct: 372 SPVPPCP--SPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPSCPAPQPRPP 429

Query: 69  PPP 71
           PPP
Sbjct: 430 PPP 432


>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
           sapiens]
          Length = 859

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 33/95 (34%), Positives = 36/95 (37%), Gaps = 23/95 (24%)

Query: 14  TPGESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPAL 73
           T G   PGS P + G+       GS P   S             P  P G KG PPPP  
Sbjct: 626 TGGAGDPGSPPPARGDTPPSE--GSAPGSTS-------------PDSPGGAKGEPPPPV- 669

Query: 74  CSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTPH 108
                  GEGVG  G  TG     GRG   A + H
Sbjct: 670 -----GPGEGVGLLG--TGREGTSGRGGSRAGSQH 697


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 19/57 (33%), Positives = 23/57 (40%)

Query: 42  GPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGG 98
           G S   K  + +  + P    G  G PPPP     P+  G G GG G   G    GG
Sbjct: 71  GKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGG 127


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 19/57 (33%), Positives = 23/57 (40%)

Query: 42  GPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGG 98
           G S   K  + +  + P    G  G PPPP     P+  G G GG G   G    GG
Sbjct: 71  GKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGG 127


>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 448

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 41  RGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKA-------SGEGVGGEGKVTGE 93
           RG S   +R R   P LP       G PPP   C +PK+        GE  GGE    G 
Sbjct: 159 RGLSGVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGC 218

Query: 94  CLVG 97
           C  G
Sbjct: 219 CSEG 222


>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
           sapiens]
          Length = 448

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 41  RGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKA-------SGEGVGGEGKVTGE 93
           RG S   +R R   P LP       G PPP   C +PK+        GE  GGE    G 
Sbjct: 159 RGLSGVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGC 218

Query: 94  CLVG 97
           C  G
Sbjct: 219 CSEG 222


>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
           sapiens]
          Length = 448

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 41  RGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKA-------SGEGVGGEGKVTGE 93
           RG S   +R R   P LP       G PPP   C +PK+        GE  GGE    G 
Sbjct: 159 RGLSGVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGC 218

Query: 94  CLVG 97
           C  G
Sbjct: 219 CSEG 222


>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
          Length = 2803

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 20   PGSSPLSVGEKVLHSCG----GSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPA 72
            PG +P     +   +C     G+ P G    S+ D    P  P+CP G  G PP  A
Sbjct: 2370 PGPAPAKAENEEAAACPAWERGAWPEGAERSSRPDTLLSPEQPVCPAGGSGGPPSSA 2426


>gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 120

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 43  PSC----KSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECL 95
           PSC    KS+R +R   S+P       G PPPPA+       G G G +    G CL
Sbjct: 51  PSCDDGPKSQRGKRGWLSVP----ASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCL 103


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 45  CKSKRDRRQLPSL--PLCPEGEKGSPP-----PPALCSSPKASGEGVGGEGKVTGECLVG 97
           C  +R     P+   P  P G   +PP     P A  SSP       G  G  T E   G
Sbjct: 600 CSGRRAPEDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPGPGAREEGAGGAATPEDGAG 659

Query: 98  GRGAGWAQTPHS 109
           GRG+  +Q+P S
Sbjct: 660 GRGSEGSQSPGS 671


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 27/71 (38%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 34  SCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKA--SGEGVGGEGKVT 91
           SCGGS P      S   R  L   PL      G  P P      KA  SG   G  G+ T
Sbjct: 315 SCGGSYP------SMGHRANLACSPL-----GGGEPSPGAGEPSKAGPSGATAGASGRAT 363

Query: 92  GECLVGGRGAG 102
           G    GG GAG
Sbjct: 364 GPEAAGGGGAG 374



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 68  PPPPALCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTP 107
           PPPP   ++PK    G       TG+    G   G A +P
Sbjct: 406 PPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSP 445


>gi|42544177 complement component (3d/Epstein Barr virus) receptor 2
           isoform 2 [Homo sapiens]
          Length = 1033

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 22  SSPLSVGEKVLH--SCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPAL-CSSPK 78
           S  L VGEK+++  S G      P+C+  R +    SL   P G+   PP   +  ++  
Sbjct: 185 SGYLLVGEKIINCLSSGKWSAVPPTCEEARCK----SLGRFPNGKVKEPPILRVGVTANF 240

Query: 79  ASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGC 114
              EG   +G  +  C++ G+G  W + P      C
Sbjct: 241 FCDEGYRLQGPPSSRCVIAGQGVAWTKMPVCEEIFC 276


>gi|54792123 complement component (3d/Epstein Barr virus) receptor 2
           isoform 1 [Homo sapiens]
          Length = 1092

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 22  SSPLSVGEKVLH--SCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPAL-CSSPK 78
           S  L VGEK+++  S G      P+C+  R +    SL   P G+   PP   +  ++  
Sbjct: 185 SGYLLVGEKIINCLSSGKWSAVPPTCEEARCK----SLGRFPNGKVKEPPILRVGVTANF 240

Query: 79  ASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGC 114
              EG   +G  +  C++ G+G  W + P      C
Sbjct: 241 FCDEGYRLQGPPSSRCVIAGQGVAWTKMPVCEEIFC 276


>gi|105990541 ATP-binding cassette, sub-family A member 4 [Homo
            sapiens]
          Length = 2273

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 43   PSCKSKRDRRQLPSLPLCPEGEKGSPPP 70
            PSC+    R +L  LP CPEG  G PPP
Sbjct: 1486 PSCRCST-REKLTMLPECPEGAGGLPPP 1512


>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
            sapiens]
          Length = 1798

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 14   TPGESCPGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPAL 73
            +P  S P SSP   G     S  G  P+         R+   S+PL P     SPPPP  
Sbjct: 1299 SPSSSVP-SSPAGSGHTRPSSLHGLAPKLQRQYRSPRRKSAGSIPLSPLAHTPSPPPPT- 1356

Query: 74   CSSPKASGEGVGG 86
             +SP+ S   + G
Sbjct: 1357 -ASPQRSPSPLSG 1368


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 20   PGSSPLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPS-----LPL---------CPEGEK 65
            P   PL+   +     GG LP  PSC+     +QL +      PL            G +
Sbjct: 2103 PREDPLTSPSRAQGGLGGQLPASPSCRDPPGPQQLLACSPAWAPLEEADGVQATTDTGAE 2162

Query: 66   GSP-PPPALCSSPKASGEGVGGEGKVTGECLVGGRGA 101
             SP  PP+L +SP    E + G       CL+ G G+
Sbjct: 2163 DSPVAPPSLTTSPCDPKEALAG-------CLLQGEGS 2192


>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
          Length = 1215

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 64  EKGSPPPPA--LCSSP-------KASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGC 114
           E+G  PPPA  LC  P        +SG G G  G  +  C  G R  G A      +A C
Sbjct: 3   ERGQQPPPAKRLCCRPGGGGGGGGSSGGGGGAGGGYSSACRPGPRAGGAAA-----AAAC 57

Query: 115 GAG 117
           G G
Sbjct: 58  GGG 60


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 18/57 (31%), Positives = 23/57 (40%)

Query: 42  GPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGG 98
           G S   K  + +  + P    G +G PPPP     P+    G GG G   G    GG
Sbjct: 71  GKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGG 127



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 38  SLPRGPSCKSKRDR--RQLPSLPLCPEGEKGSPPPPALCSSPKASGEGVGGEG 88
           S  R     S RDR  RQ   LP  P  E+G PPP    SS        GG G
Sbjct: 328 SSSRSDLYSSGRDRVGRQERGLP--PSMERGYPPPRDSYSSSSRGAPRGGGRG 378


>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
          Length = 1499

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 15  PGESCPGSSPLSVGEKVLHS-CGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPAL 73
           P +S    +P SVG        GG+ P  P+  +  +       PL P G+  S P PAL
Sbjct: 327 PEDSSQDLAPNSVGAASTGGGTGGTHPNTPTATTANN-------PLPPGGDPSSAPGPAL 379

Query: 74  CSSPKASGEG----VGGEG 88
                A G G    VG EG
Sbjct: 380 LGEAAAPGNGQRSLVGSEG 398



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 53  QLPSLPLCPEGEKGSP--PPPALCSSPKASGEGVGGEG 88
           Q   LPL      G+P  PPP L   P A G G GG G
Sbjct: 195 QTTQLPLSESSVPGAPHGPPPGL--RPDAPGGGGGGGG 230


>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
           sapiens]
          Length = 1242

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/28 (50%), Positives = 14/28 (50%)

Query: 58  PLCPEGEKGSPPPPALCSSPKASGEGVG 85
           PL P G  G P PP LC     S  GVG
Sbjct: 158 PLAPPGPPGPPRPPGLCDDSPTSCFGVG 185


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 18/110 (16%)

Query: 18  SCPGSS-PLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPS--------LPLCPEGEKGSP 68
           +CPGS+ P S    VL  C G+  RG     +R R   PS        LP       G P
Sbjct: 239 ACPGSTLPPS---SVLAGCVGTRARGHG-GVQRQRFSAPSSHSTGARTLPTPSRARPGKP 294

Query: 69  PPPALCSSPKASGEGVGGEGKVTGECLVG-GRGAGWAQTPHSHSAGCGAG 117
            P    S+P A   G GG   +T   LVG GRG+G   +  +H+     G
Sbjct: 295 APRG--SAPPARLRGGGGGSGLTQ--LVGSGRGSGVTHSVGTHALATRRG 340


>gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 558

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 27/93 (29%)

Query: 43  PSCKSKRDRRQLPSLPLCP---EGEKGSPP---------------PPALCSS-----PKA 79
           PS ++ R R  LP +  CP    G   +PP               P ALCSS      + 
Sbjct: 27  PSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGSRRCAPAALCSSGGCALTRR 86

Query: 80  SGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSA 112
           +  G  G G   G+   GGRGA W + P   +A
Sbjct: 87  AACGGRGGGTRAGQ---GGRGA-WGEAPVGSAA 115


>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
           [Homo sapiens]
          Length = 529

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 24  PLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKASGEG 83
           P  VG    +   G +  GP+ +        P LP  PE    +PPP   C      GEG
Sbjct: 343 PQGVGSAAPYWGRGEVSVGPAHQ--------PFLP--PE----APPPIPACLCQPQPGEG 388

Query: 84  VGG-EGKVTGECLVGGRGAGWA----QTPHSHSAGCGAG 117
            GG  G+  G C  G  G  W     QTP +H  G   G
Sbjct: 389 SGGAAGRDRGGC-DGVAGPPWVQRARQTPEAHPPGACVG 426


>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
           sapiens]
          Length = 443

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 27/93 (29%)

Query: 43  PSCKSKRDRRQLPSLPLCP---EGEKGSPP---------------PPALCSS-----PKA 79
           PS ++ R R  LP +  CP    G   +PP               P ALCSS      + 
Sbjct: 27  PSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGSRRCAPAALCSSGGCALTRR 86

Query: 80  SGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSA 112
           +  G  G G   G+   GGRGA W + P   +A
Sbjct: 87  AACGGRGGGTRAGQ---GGRGA-WGEAPVGSAA 115


>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
           [Homo sapiens]
          Length = 503

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 24  PLSVGEKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKGSPPPPALCSSPKASGEG 83
           P  VG    +   G +  GP+ +        P LP  PE    +PPP   C      GEG
Sbjct: 317 PQGVGSAAPYWGRGEVSVGPAHQ--------PFLP--PE----APPPIPACLCQPQPGEG 362

Query: 84  VGG-EGKVTGECLVGGRGAGWA----QTPHSHSAGCGAG 117
            GG  G+  G C  G  G  W     QTP +H  G   G
Sbjct: 363 SGGAAGRDRGGC-DGVAGPPWVQRARQTPEAHPPGACVG 400


>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
           sapiens]
          Length = 522

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 27/93 (29%)

Query: 43  PSCKSKRDRRQLPSLPLCP---EGEKGSPP---------------PPALCSS-----PKA 79
           PS ++ R R  LP +  CP    G   +PP               P ALCSS      + 
Sbjct: 27  PSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGSRRCAPAALCSSGGCALTRR 86

Query: 80  SGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSA 112
           +  G  G G   G+   GGRGA W + P   +A
Sbjct: 87  AACGGRGGGTRAGQ---GGRGA-WGEAPVGSAA 115


>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
           sapiens]
          Length = 999

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 15  PGESCPGSSPLSVG-EKVLHSCGGSLPRGPSCKSKRDRRQLPSLPLCPEGEKG------- 66
           PG   P S+P S      L S     PRG   + +  RRQ P   LC +           
Sbjct: 148 PGGRSPDSAPSSSSASSSLSSSPQPPPRGDRARDEGARRQGPGAHLCHQKSSSLPGTACL 207

Query: 67  -----SPPPPA-LCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTP 107
                 PPPPA    SP  S     GE   + + ++   G   A+ P
Sbjct: 208 EQLLEPPPPPAEPARSPAESRAPETGEEHGSSQKIINTAGTSNAEVP 254


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.136    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,662,360
Number of Sequences: 37866
Number of extensions: 498516
Number of successful extensions: 2802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 2376
Number of HSP's gapped (non-prelim): 698
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.