Search of human proteins with 239752871

Search of human proteins with 239752871

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752871 PREDICTED: hypothetical protein [Homo sapiens]
         (92 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752871 PREDICTED: hypothetical protein [Homo sapiens]           193   3e-50
gi|239747423 PREDICTED: hypothetical protein XP_002346701 [Homo ...   193   3e-50
gi|239741248 PREDICTED: hypothetical protein XP_002342105 [Homo ...   193   3e-50
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             41   2e-04
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ...    35   0.013
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           32   0.14 
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          32   0.14 
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ...    32   0.14 
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ...    32   0.14 
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    31   0.25 
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ...    31   0.25 
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    31   0.25 
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        31   0.25 
gi|146219841 PNMA-like 2 [Homo sapiens]                                31   0.25 
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ...    30   0.32 
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ...    30   0.32 
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ...    30   0.32 
gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ...    30   0.32 
gi|46430491 scratch 2 protein [Homo sapiens]                           30   0.32 
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa...    30   0.32 
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo ...    30   0.42 

>gi|239752871 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 92

 Score =  193 bits (490), Expect = 3e-50
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
          MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR
Sbjct: 1  MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60

Query: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
          PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK
Sbjct: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92


>gi|239747423 PREDICTED: hypothetical protein XP_002346701 [Homo
          sapiens]
          Length = 92

 Score =  193 bits (490), Expect = 3e-50
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
          MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR
Sbjct: 1  MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60

Query: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
          PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK
Sbjct: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92


>gi|239741248 PREDICTED: hypothetical protein XP_002342105 [Homo
          sapiens]
          Length = 92

 Score =  193 bits (490), Expect = 3e-50
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
          MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR
Sbjct: 1  MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60

Query: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
          PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK
Sbjct: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 19/102 (18%)

Query: 6   SSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGD---RGGR-- 60
           ++ P  P  G     P+   S +  GG AAG AGR    RRRRRR R       R GR  
Sbjct: 351 AAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410

Query: 61  ----PSFGGSRPPSALRAANRS----------PVRGRLQGHG 88
               P  G SR  S  R+++ S          P  G  +GHG
Sbjct: 411 PRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHG 452


>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
           subunit [Homo sapiens]
          Length = 2339

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 32/82 (39%), Positives = 35/82 (42%), Gaps = 17/82 (20%)

Query: 11  APRA-----GARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGG 65
           AP+A     GAR+ RP+    HR    EAAG      P   R  RGR  G  GGR     
Sbjct: 871 APKAESGEPGAREERPR---PHRSHSKEAAG------PPEARSERGRGPGPEGGRRH--- 918

Query: 66  SRPPSALRAANRSPVRGRLQGH 87
            R  S   AA R P R R   H
Sbjct: 919 HRRGSPEEAAEREPRRHRAHRH 940


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/37 (43%), Positives = 18/37 (48%)

Query: 31  GGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSR 67
           GG+  G  G        R RG Y GDRGG   +GG R
Sbjct: 506 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 542



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 27  HREAGGEAAGQAGR--IFPSRRRRRRGRYHGDRGGRPSFGGSR 67
           +R  GG   G  GR       R    G   GDRGG  +FGG R
Sbjct: 171 NRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 213


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/37 (43%), Positives = 18/37 (48%)

Query: 31  GGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSR 67
           GG+  G  G        R RG Y GDRGG   +GG R
Sbjct: 509 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 545



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 27  HREAGGEAAGQAGR--IFPSRRRRRRGRYHGDRGGRPSFGGSR 67
           +R  GG   G  GR       R    G   GDRGG  +FGG R
Sbjct: 174 NRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 216


>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 11  APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRP 61
           A  AGAR      P   R   G AA +A R  P   RR RGR  G +  RP
Sbjct: 136 AIEAGAR------PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180


>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
           sapiens]
          Length = 219

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 11  APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRP 61
           A  AGAR      P   R   G AA +A R  P   RR RGR  G +  RP
Sbjct: 136 AIEAGAR------PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180


>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
           sapiens]
          Length = 219

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 11  APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRP 61
           A  AGAR      P   R   G AA +A R  P   RR RGR  G +  RP
Sbjct: 136 AIEAGAR------PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)

Query: 4   SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
           +FS++P  P   ++G+R LRP  PG      S R +   AA QA  R  P R        
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160

Query: 49  -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
             RG+     G RPS  G +PP       RAA R   R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198


>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
           sapiens]
          Length = 209

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)

Query: 4   SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
           +FS++P  P   ++G+R LRP  PG      S R +   AA QA  R  P R        
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160

Query: 49  -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
             RG+     G RPS  G +PP       RAA R   R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)

Query: 4   SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
           +FS++P  P   ++G+R LRP  PG      S R +   AA QA  R  P R        
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160

Query: 49  -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
             RG+     G RPS  G +PP       RAA R   R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)

Query: 4   SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
           +FS++P  P   ++G+R LRP  PG      S R +   AA QA  R  P R        
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160

Query: 49  -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
             RG+     G RPS  G +PP       RAA R   R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 11  APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRR----RGRYHGDRGGRPSFGGS 66
           +P+   R   PQ PG  R    +  G++      R   R    RGR       R     S
Sbjct: 527 SPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRS 586

Query: 67  RPPSALRAANRSPVRGRLQGHGLTRK 92
           R P+  R+ +R+P R R +     R+
Sbjct: 587 RTPARRRSRSRTPTRRRSRSRTPARR 612



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 25  GSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSAL-RAANRSPVRGR 83
           G  R       G++    P+RR R R R    R GR     SR P+   R+ +R+P RGR
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSR---SRTPARRGRSRSRTPRRGR 701

Query: 84  LQGHGLTRK 92
            +   L R+
Sbjct: 702 SRSRSLVRR 710



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 11  APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRR-----RGRYHGDRGGRPSFGG 65
           A R  +    P   G  R       G++    P+RRR R     R R       R     
Sbjct: 557 ARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSR 616

Query: 66  SRPPSALRAANRSPVRGRLQGHGLTRK 92
           SR P+  R+  RSPVR R +     R+
Sbjct: 617 SRTPARRRSRTRSPVRRRSRSRSPARR 643


>gi|146219841 PNMA-like 2 [Homo sapiens]
          Length = 635

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 18/70 (25%)

Query: 11  APRAGARDLRPQCPGSHREA--GGEAAGQAGRIFPSRRRRRRGR---------------- 52
           A  AG     P  P S  +A   GE  GQAG +  + R  RRGR                
Sbjct: 118 AAEAGTPGEAPTPPASETQAQDSGEVTGQAGSLLGAARNPRRGRRGRRNRTRRNRLTQKG 177

Query: 53  YHGDRGGRPS 62
               RGGRPS
Sbjct: 178 KKRSRGGRPS 187


>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 743

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 24  PGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSALRAANRSPVRGR 83
           PG H EAGG   G AG++    R       HG RG +   G      A      + +R  
Sbjct: 536 PGWHSEAGGRRDGGAGQVVQGLRGP-----HGRRGPQVQAGWQAGRQAAALGRGAALRRA 590

Query: 84  LQGHG 88
            QG G
Sbjct: 591 AQGAG 595


>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
           sapiens]
          Length = 600

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 33  EAAGQAGRIFPSRRRRRRGRYHG------DRGGRPSFGGSRPPSAL-RAANRSPVRGRLQ 85
           E  GQ GR  P +  RR GR HG      D GG P   G     A  R A      G+L 
Sbjct: 373 EVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLA 432

Query: 86  G 86
           G
Sbjct: 433 G 433


>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 284

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 10  VAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPP 69
           + P  G +D      G  R  GGEA         +R+R R G   GDR   P  G + P 
Sbjct: 134 MGPSPGGKDGGAFIWGGARAGGGEAL--------TRKRARGGAVPGDR---PGGGAASPL 182

Query: 70  SALRAANRSPVRGRLQGHG 88
            A   A+R   RGR    G
Sbjct: 183 PAPLLASRPRPRGRCAPDG 201


>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
           sapiens]
          Length = 697

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 24  PGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSALRAANRSPVRGR 83
           PG H EAGG   G AG++    R       HG RG +   G      A      + +R  
Sbjct: 490 PGWHSEAGGRRDGGAGQVVQGLRGP-----HGRRGPQVQAGWQAGRQAAALGRGAALRRA 544

Query: 84  LQGHG 88
            QG G
Sbjct: 545 AQGAG 549


>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 510

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 33  EAAGQAGRIFPSRRRRRRGRYHG------DRGGRPSFGGSRPPSAL-RAANRSPVRGRLQ 85
           E  GQ GR  P +  RR GR HG      D GG P   G     A  R A      G+L 
Sbjct: 230 EVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLA 289

Query: 86  G 86
           G
Sbjct: 290 G 290


>gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 10 VAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPP 69
          + P  G +D      G  R  GGEA         +R+R R G   GDR   P  G + P 
Sbjct: 1  MGPSPGGKDGGAFIWGGARAGGGEAL--------TRKRARGGAVPGDR---PGGGAASPL 49

Query: 70 SALRAANRSPVRGRLQGHG 88
           A   A+R   RGR    G
Sbjct: 50 PAPLLASRPRPRGRCAPDG 68


>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
           sapiens]
          Length = 457

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 33  EAAGQAGRIFPSRRRRRRGRYHG------DRGGRPSFGGSRPPSAL-RAANRSPVRGRLQ 85
           E  GQ GR  P +  RR GR HG      D GG P   G     A  R A      G+L 
Sbjct: 230 EVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLA 289

Query: 86  G 86
           G
Sbjct: 290 G 290


>gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 10 VAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPP 69
          + P  G +D      G  R  GGEA         +R+R R G   GDR   P  G + P 
Sbjct: 1  MGPSPGGKDGGAFIWGGARAGGGEAL--------TRKRARGGAVPGDR---PGGGAASPL 49

Query: 70 SALRAANRSPVRGRLQGHG 88
           A   A+R   RGR    G
Sbjct: 50 PAPLLASRPRPRGRCAPDG 68


>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
           sapiens]
          Length = 697

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 24  PGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSALRAANRSPVRGR 83
           PG H EAGG   G AG++    R       HG RG +   G      A      + +R  
Sbjct: 490 PGWHSEAGGRRDGGAGQVVQGLRGP-----HGRRGPQVQAGWQAGRQAAALGRGAALRRA 544

Query: 84  LQGHG 88
            QG G
Sbjct: 545 AQGAG 549


>gi|46430491 scratch 2 protein [Homo sapiens]
          Length = 307

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 9   PVAPRAGARDLRPQCPGSHREAGGEAAG------QAGRIFPSRRRRRRGRYHGDRGGRPS 62
           P AP   +    PQ   S R   GEAA        A  I   R RRRRG   GD GG   
Sbjct: 75  PAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRRRRGGGGGDAGGSGD 134

Query: 63  FGGS 66
            GG+
Sbjct: 135 AGGA 138


>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
           sapiens]
          Length = 272

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 9   PVAPRAGARDLRPQCPGS-HREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSR 67
           PV  RAG   L  Q  GS + EAGG     A     S  R+  G   G+RGG P+  G  
Sbjct: 38  PVYARAG---LLSQAKGSAYLEAGGTKVLCA----VSGPRQAEG---GERGGGPAGAGGE 87

Query: 68  PPSALRAA-----NRSPVRGR 83
            P+ALR        R+P  GR
Sbjct: 88  APAALRGRLLCDFRRAPFAGR 108


>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 9  PVAPRAGARDLRPQCPGSHREAGGEAAGQAG-RIFP---SRRRRRRGRYHGDRGGRPSFG 64
          P  P A    LR +     R   GE  G++G R+ P   +RRR RRG    D G   SF 
Sbjct: 13 PPEPAAADTPLRRR-----RRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEATSFP 67

Query: 65 G 65
          G
Sbjct: 68 G 68


>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 625

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 2   SCSFSSLPVAPRAGARDLRPQCPGSHR---EAGGEAAGQAGRIFPSRRRRRRGRYHGDRG 58
           SCS +SLP +P   A       P S R      G   G+      S  RRR G    + G
Sbjct: 205 SCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLSRRREGALSSESG 264

Query: 59  GRPSFGGSRPPSALRAANRSPVR 81
              S         LR   R+  R
Sbjct: 265 ASSSSYSGESLRELRWPPRASAR 287


>gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo
          sapiens]
          Length = 152

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 34 AAGQAGRIFPSRRRRRRGR-YHGDRGGRPS 62
          A G   R+ P+ RRRRRGR   G  GGR S
Sbjct: 25 AVGAGSRLCPAGRRRRRGRGCFGSSGGRKS 54


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,491,777
Number of Sequences: 37866
Number of extensions: 225212
Number of successful extensions: 1365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 255
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.