Guide to the Human Genome
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Name: LOC100289710 Sequence: fasta or formatted (92aa) NCBI GI: 239747423
Description:

PREDICTED: hypothetical protein XP_002346701

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         10           2
 C cysteine            2.2          2           1
 D aspartate           2.2          2           1
 E glutamate           2.2          2           1
 F phenylalanine       3.3          3           1
 G glycine            16.3         15           2
 H histidine           3.3          3           1
 I isoleucine          1.1          1           1
 K lysine              1.1          1           1
 L leucine             5.4          5           1
 M methionine          1.1          1           1
 N asparagine          1.1          1           1
 P proline             9.8          9           2
 Q glutamine           3.3          3           1
 R arginine           21.7         20           6
 S serine             10.9         10           2
 T threonine           1.1          1           1
 V valine              2.2          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346701 
LOC100292634          1.000   PREDICTED: hypothetical protein 
LOC100289390          1.000   PREDICTED: hypothetical protein XP_002342105 
FLJ37078              0.095   hypothetical protein LOC222183 
CACNA1B               0.060   calcium channel, voltage-dependent, N type, alpha 1B ...
TAF15                 0.042   TBP-associated factor 15 isoform 2 
TAF15                 0.042   TBP-associated factor 15 isoform 1 
LOC100293212          0.042   PREDICTED: hypothetical protein 
LOC100289796          0.042   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.042   PREDICTED: hypothetical protein XP_002342329 
LOC100291634          0.036   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.036   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.036   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.036   PREDICTED: hypothetical protein 
SRRM2                 0.036   splicing coactivator subunit SRm300 
PNMAL2                0.036   PNMA-like 2 
LOC100293513          0.030   PREDICTED: hypothetical protein 
LOC100291596          0.030   PREDICTED: hypothetical protein XP_002344746 
LOC728431             0.030   PREDICTED: hypothetical protein 
LOC100291129          0.030   PREDICTED: hypothetical protein XP_002347815 
LOC100288068          0.030   PREDICTED: hypothetical protein 
LOC728431             0.030   PREDICTED: hypothetical protein 
LOC100288068          0.030   PREDICTED: hypothetical protein XP_002343259 
LOC728431             0.030   PREDICTED: hypothetical protein 
LOC100294343          0.030   PREDICTED: hypothetical protein XP_002344111 
SCRT2                 0.030   scratch 2 protein 
EXOSC6                0.030   homolog of yeast mRNA transport regulator 3 
LOC730060             0.030   PREDICTED: hypothetical protein 
LOC100130174          0.030   PREDICTED: hypothetical protein 
LOC100291632          0.030   PREDICTED: hypothetical protein XP_002344527 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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