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Search of human proteins with 239752728
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752728 PREDICTED: hypothetical protein [Homo sapiens] 507 e-144
gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo ... 507 e-144
gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo ... 44 1e-04
gi|239754316 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239748867 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239742896 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens] 39 0.005
gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo ... 37 0.021
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo... 34 0.13
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo... 34 0.13
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo... 34 0.13
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo... 34 0.13
gi|46852174 kinesin family member 3A [Homo sapiens] 33 0.30
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 32 0.51
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 32 0.66
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 32 0.66
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 31 1.1
gi|94536846 synaptotagmin VIII [Homo sapiens] 31 1.1
gi|40254871 transmembrane protease, serine 11E [Homo sapiens] 31 1.1
gi|153791781 transmembrane protease, serine 11E2 [Homo sapiens] 31 1.1
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 31 1.1
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 30 1.5
gi|239752467 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ... 30 1.5
gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo ... 30 1.5
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ... 30 1.5
gi|44890068 zinc finger protein 262 [Homo sapiens] 30 1.9
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho... 30 2.5
>gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 507 bits (1305), Expect = e-144
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60
MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG
Sbjct: 1 MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60
Query: 61 GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120
GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL
Sbjct: 61 GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120
Query: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180
VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG
Sbjct: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180
Query: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240
QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED
Sbjct: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240
Query: 241 RLWLQR 246
RLWLQR
Sbjct: 241 RLWLQR 246
>gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo
sapiens]
Length = 246
Score = 507 bits (1305), Expect = e-144
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60
MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG
Sbjct: 1 MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60
Query: 61 GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120
GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL
Sbjct: 61 GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120
Query: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180
VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG
Sbjct: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180
Query: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240
QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED
Sbjct: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240
Query: 241 RLWLQR 246
RLWLQR
Sbjct: 241 RLWLQR 246
>gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo
sapiens]
Length = 368
Score = 43.9 bits (102), Expect = 1e-04
Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 27/165 (16%)
Query: 81 GANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRL 140
G++ +PGE GQ LG L ++V++ QG G P + P LRL
Sbjct: 41 GSDYDRPGEPAVLGQLEQAALGQQA-LGAVVDILQGA-----GGP------DQRGPRLRL 88
Query: 141 G------LQEVSQGTEGEVGERGKDNDEEG----QGVWVS-PEVHGLHKEGQPQQQYQGR 189
G LQ+ + EGE GE G +D+ G QG V +H + Q ++
Sbjct: 89 GGSGTRQLQQAAATREGEEGEAGGLSDQPGVMRTQGRTVGVAALHARVRASQRAGRHPVE 148
Query: 190 QQVGPDIHGLVVLLEQRAEIEAPGLMQ--RPVARIDVRLPEERRH 232
++GP V EQRA APG + RP R P RRH
Sbjct: 149 AELGPAQR--AVQQEQRARARAPGRVPGGRPRLLQQSRPPLPRRH 191
>gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
+GPD+ LVV L++ E+ AP + + VA DVRLPEE H+
Sbjct: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
>gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
+GPD+ LVV L++ E+ AP + + VA DVRLPEE H+
Sbjct: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
>gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
+GPD+ LVV L++ E+ AP + + VA DVRLPEE H+
Sbjct: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
Length = 325
Score = 38.5 bits (88), Expect = 0.005
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 94 GQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG------LQEVSQ 147
GQ LG L ++V++ QG G P E P LRLG LQ+ +
Sbjct: 11 GQLEQAALGQQA-LGAVVDILQGA-----GGP------EQRGPRLRLGGSGTRQLQQAAA 58
Query: 148 GTEGEVGERGKDNDEEG----QGVWVS-PEVHGLHKEGQPQQQYQGRQQVGPDIHGLVVL 202
EGE GE G +D+ G QG V +H + Q ++ ++GP V
Sbjct: 59 TREGEEGEAGGLSDQPGVMRTQGRTVGVAALHARFRASQRAGRHPVEAELGPAQR--AVQ 116
Query: 203 LEQRAEIEAPGLMQ--RPVARIDVRLPEERRH 232
EQRA APG + RP R P RRH
Sbjct: 117 QEQRARARAPGRVPGGRPRLLQQSRPPLPRRH 148
>gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo
sapiens]
Length = 325
Score = 36.6 bits (83), Expect = 0.021
Identities = 47/152 (30%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 94 GQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG------LQEVSQ 147
GQ LG L ++V++ QG G P + P LRLG LQ+ +
Sbjct: 11 GQLEQAALGQQA-LGAVVDILQGA-----GGP------DQRGPRLRLGGSGTRQLQQAAA 58
Query: 148 GTEGEVGERGKDNDEEG----QGVWVS-PEVHGLHKEGQPQQQYQGRQQVGPDIHGLVVL 202
EGE GE G +D+ G QG V +H + Q ++ ++GP V
Sbjct: 59 TREGEEGEAGGLSDQPGVMRTQGRTVGVAALHARVRASQRAGRHPVEAELGPAQR--AVQ 116
Query: 203 LEQRAEIEAPGLMQ--RPVARIDVRLPEERRH 232
EQRA APG + RP R P RRH
Sbjct: 117 QEQRARARAPGRVPGGRPRLLQQSRPPLPRRH 148
>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.13
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
Q ++ PE+ L++ EG+ +GK DEE PE G KEG+ +++ +
Sbjct: 23 QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82
Query: 189 RQQVGPDIHG 198
+ G + G
Sbjct: 83 EMEGGSEREG 92
>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.13
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
Q ++ PE+ L++ EG+ +GK DEE PE G KEG+ +++ +
Sbjct: 23 QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82
Query: 189 RQQVGPDIHG 198
+ G + G
Sbjct: 83 EMEGGSEREG 92
>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.13
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
Q ++ PE+ L++ EG+ +GK DEE PE G KEG+ +++ +
Sbjct: 23 QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82
Query: 189 RQQVGPDIHG 198
+ G + G
Sbjct: 83 EMEGGSEREG 92
>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.13
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
Q ++ PE+ L++ EG+ +GK DEE PE G KEG+ +++ +
Sbjct: 23 QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82
Query: 189 RQQVGPDIHG 198
+ G + G
Sbjct: 83 EMEGGSEREG 92
>gi|46852174 kinesin family member 3A [Homo sapiens]
Length = 699
Score = 32.7 bits (73), Expect = 0.30
Identities = 23/115 (20%), Positives = 59/115 (51%), Gaps = 19/115 (16%)
Query: 127 IVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQY 186
++++ + + EL+ L+E + + ++ +D+DEEG+ + ++G+ +++
Sbjct: 359 LLRQFQKEIEELKKKLEEGEEISGSDISGSEEDDDEEGE----------VGEDGEKRKKR 408
Query: 187 QGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHREDR 241
+G+++V PD ++E +A+I+ +R + + EE R+ + E R
Sbjct: 409 RGKKKVSPD-----KMIEMQAKIDE----ERKALETKLDMEEEERNKARAELEKR 454
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 32.0 bits (71), Expect = 0.51
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 85 GKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLGLQE 144
G PGEKG HG S P G D ++ +G L G P M ++ +G +
Sbjct: 900 GLPGEKGDHGFPGS---SGPRG-DPGLKGDKGDVGL-PGKP-------GSMDKVDMGSMK 947
Query: 145 VSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQGRQQVGPDIHG 198
+G +GE G+ G ++ +G +P V G K+GQ Q Q + P I G
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPG--KDGQAGQPGQPGPKGDPGISG 999
Score = 28.1 bits (61), Expect = 7.3
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 85 GKPGEKGSHGQKNSLHLGMPG--GLDSIVEVCQGT--AKLVHGHPHIVQEEEAVMPELRL 140
G PG G GQK +G+PG GL + + GT K G P + E A+ P
Sbjct: 720 GLPGNPGVQGQKGEPGVGLPGLKGLPGLPGI-PGTPGEKGSIGVPGVPGEHGAIGPP--- 775
Query: 141 GLQEVSQGTEGEVGERGKDNDEEGQGV 167
GL QG GE G G GV
Sbjct: 776 GL----QGIRGEPGPPGLPGSVGSPGV 798
>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
isoform 1 [Homo sapiens]
Length = 1112
Score = 31.6 bits (70), Expect = 0.66
Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 17/169 (10%)
Query: 75 DVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQ--GTAKLVHGHPHIVQEEE 132
DV V +A GE K + +P GLD + + ++ P V EE
Sbjct: 498 DVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEE 557
Query: 133 AVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQGRQQV 192
E R S+ E E+ R + +E + PQ++YQ V
Sbjct: 558 ----EQRRPKHRPSEADEEELARRREARKQEQAN-----NPFYIKSSPSPQKRYQDTPGV 608
Query: 193 GPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHREDR 241
H VV ++ ++ PGL P++ V+L EERRH + ++ R
Sbjct: 609 E---HIPVVQIDLSVPLKVPGL---PMSDQYVKLEEERRHRQKLEKDKR 651
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 31.6 bits (70), Expect = 0.66
Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 17/169 (10%)
Query: 75 DVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQ--GTAKLVHGHPHIVQEEE 132
DV V +A GE K + +P GLD + + ++ P V EE
Sbjct: 589 DVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEE 648
Query: 133 AVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQGRQQV 192
E R S+ E E+ R + +E + PQ++YQ V
Sbjct: 649 ----EQRRPKHRPSEADEEELARRREARKQEQAN-----NPFYIKSSPSPQKRYQDTPGV 699
Query: 193 GPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHREDR 241
H VV ++ ++ PGL P++ V+L EERRH + ++ R
Sbjct: 700 E---HIPVVQIDLSVPLKVPGL---PMSDQYVKLEEERRHRQKLEKDKR 742
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.1
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 37 RGGVG--GHEDTMHHRT---NVQCVGQDGGHLLACA---AQQAWFLDVLVIAGANA---G 85
RG VG G +D ++ R N+ G G + A A +Q F + V G + G
Sbjct: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177
Query: 86 KPGEK----GSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG 141
GEK GS G L L G + VC +L G +++ PEL L
Sbjct: 178 VGGEKRQEAGSPGWNPGLGLARLGSYST---VCLAP-ELAFGLGGVLRVSGPATPELALR 233
Query: 142 LQEVSQGTEGEVGERGKDNDEEGQGVWVSP 171
+ V+ + G G+RG +N EEG+ + + P
Sbjct: 234 SRAVTPPSLGGGGDRG-ENREEGRDLCLGP 262
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.1
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 37 RGGVG--GHEDTMHHRT---NVQCVGQDGGHLLACA---AQQAWFLDVLVIAGANA---G 85
RG VG G +D ++ R N+ G G + A A +Q F + V G + G
Sbjct: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177
Query: 86 KPGEK----GSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG 141
GEK GS G L L G + VC +L G +++ PEL L
Sbjct: 178 VGGEKRQEAGSPGWNPGLGLARLGSYST---VCLAP-ELAFGLGGVLRVSGPATPELALR 233
Query: 142 LQEVSQGTEGEVGERGKDNDEEGQGVWVSP 171
+ V+ + G G+RG +N EEG+ + + P
Sbjct: 234 SRAVTPPSLGGGGDRG-ENREEGRDLCLGP 262
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.1
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 37 RGGVG--GHEDTMHHRT---NVQCVGQDGGHLLACA---AQQAWFLDVLVIAGANA---G 85
RG VG G +D ++ R N+ G G + A A +Q F + V G + G
Sbjct: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177
Query: 86 KPGEK----GSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG 141
GEK GS G L L G + VC +L G +++ PEL L
Sbjct: 178 VGGEKRQEAGSPGWNPGLGLARLGSYST---VCLAP-ELAFGLGGVLRVSGPATPELALR 233
Query: 142 LQEVSQGTEGEVGERGKDNDEEGQGVWVSP 171
+ V+ + G G+RG +N EEG+ + + P
Sbjct: 234 SRAVTPPSLGGGGDRG-ENREEGRDLCLGP 262
>gi|94536846 synaptotagmin VIII [Homo sapiens]
Length = 401
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 156 RGKDNDEEGQGVW----------VSPEVHGLHKEGQPQQQYQGRQQVGPDI----HGLVV 201
R K D+E G+ V P+V GL QQ+ GR Q+ + + V
Sbjct: 78 RKKPRDKESVGLGSARGTTTTHLVQPDVDGLESSPGDAQQW-GRLQLSLEFDFGSQEIRV 136
Query: 202 LLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHR 238
L Q A++ PG P AR+ V RH + +HR
Sbjct: 137 GLRQAADLR-PGGTVDPYARVSVSTQAGHRHETKVHR 172
>gi|40254871 transmembrane protease, serine 11E [Homo sapiens]
Length = 423
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 55 CVGQDGGHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSL 99
C G GG L++ A+ W+L +V G KP + G + + +L
Sbjct: 369 CQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTAL 413
>gi|153791781 transmembrane protease, serine 11E2 [Homo sapiens]
Length = 423
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 55 CVGQDGGHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSL 99
C G GG L++ A+ W+L +V G KP + G + + +L
Sbjct: 369 CQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTAL 413
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 60 GGHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMP---GGLDSIV 111
G +L AA + + V+V ANAG+PG K +KN G GGL I+
Sbjct: 161 GAGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFIL 215
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 30.4 bits (67), Expect = 1.5
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 30 VEKSWIIRGGVGGHEDTMHHRTNVQC-VGQDG----------GHLLACAAQQAWFLDVLV 78
V SW IRG D H V VG G +L +A+ +W + LV
Sbjct: 25 VRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADGKTWSRVATVLGHSARLSWDRNYLV 84
Query: 79 IAGANAGKPGEKGSHGQKNS-LHLGMPGGLDSIVEV 113
I GA AG PG + G+ + L +G GL++ V V
Sbjct: 85 ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
>gi|239752467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 135 MPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVW-VSPEVHGLHKEGQPQQQYQGRQQVG 193
M E G+Q E E + +D E + V V P+V G KEGQ Q G G
Sbjct: 26 MLERTAGVQSKEAALEEEAVLKVEDIMAEVEVVVEVEPDV-GWQKEGQRAQPGPGPSTPG 84
Query: 194 PDIHGLVVLLEQRAEIEAPGLMQRP 218
P + L VL + + APG P
Sbjct: 85 PSMDSLEVLHLEVGSVNAPGHRASP 109
>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 30.4 bits (67), Expect = 1.5
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 30 VEKSWIIRGGVGGHEDTMHHRTNVQC-VGQDG----------GHLLACAAQQAWFLDVLV 78
V SW IRG D H V VG G +L +A+ +W + LV
Sbjct: 25 VRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADGKTWSRVATVLGHSARLSWDRNYLV 84
Query: 79 IAGANAGKPGEKGSHGQKNS-LHLGMPGGLDSIVEV 113
I GA AG PG + G+ + L +G GL++ V V
Sbjct: 85 ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
>gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo
sapiens]
Length = 357
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 135 MPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVW-VSPEVHGLHKEGQPQQQYQGRQQVG 193
M E G+Q E E + +D E + V V P+V G KEGQ Q G G
Sbjct: 26 MLERTAGVQSKEAALEEEAVLKVEDIMAEVEVVVEVEPDV-GWQKEGQRAQPGPGPSTPG 84
Query: 194 PDIHGLVVLLEQRAEIEAPGLMQRP 218
P + L VL + + APG P
Sbjct: 85 PSMDSLEVLHLEVGSVNAPGHRASP 109
>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 30.4 bits (67), Expect = 1.5
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 30 VEKSWIIRGGVGGHEDTMHHRTNVQC-VGQDG----------GHLLACAAQQAWFLDVLV 78
V SW IRG D H V VG G +L +A+ +W + LV
Sbjct: 25 VRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADGKTWSRVATVLGHSARLSWDRNYLV 84
Query: 79 IAGANAGKPGEKGSHGQKNS-LHLGMPGGLDSIVEV 113
I GA AG PG + G+ + L +G GL++ V V
Sbjct: 85 ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
>gi|44890068 zinc finger protein 262 [Homo sapiens]
Length = 1548
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 128 VQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQ 187
VQE ++ + + G E Q E + D +GQG+ H++G PQ + +
Sbjct: 1119 VQEADSELKQFSKG--ETEQDLEADFPSDSFDPLNKGQGIQARSRTRRRHRDGFPQPRRR 1176
Query: 188 GRQQ 191
GR++
Sbjct: 1177 GRKK 1180
>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
sapiens]
Length = 333
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Query: 148 GTEGEVGERGKDNDEEGQGV------WVSPEVH------------GLHKEGQPQQQYQGR 189
GT GE GERG D E +G+ SP H GL E PQ Q +
Sbjct: 68 GTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNK 127
Query: 190 QQVGP 194
VGP
Sbjct: 128 GDVGP 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,290,154
Number of Sequences: 37866
Number of extensions: 572334
Number of successful extensions: 1821
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1608
Number of HSP's gapped (non-prelim): 281
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.