Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239752728

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]
         (246 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]           507   e-144
gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo ...   507   e-144
gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo ...    44   1e-04
gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]           39   0.005
gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo ...    37   0.021
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo...    34   0.13 
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo...    34   0.13 
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo...    34   0.13 
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo...    34   0.13 
gi|46852174 kinesin family member 3A [Homo sapiens]                    33   0.30 
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     32   0.51 
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ...    32   0.66 
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ...    32   0.66 
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ...    31   1.1  
gi|94536846 synaptotagmin VIII [Homo sapiens]                          31   1.1  
gi|40254871 transmembrane protease, serine 11E [Homo sapiens]          31   1.1  
gi|153791781 transmembrane protease, serine 11E2 [Homo sapiens]        31   1.1  
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H...    31   1.1  
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ...    30   1.5  
gi|239752467 PREDICTED: hypothetical protein [Homo sapiens]            30   1.5  
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ...    30   1.5  
gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo ...    30   1.5  
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ...    30   1.5  
gi|44890068 zinc finger protein 262 [Homo sapiens]                     30   1.9  
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho...    30   2.5  

>gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 246

 Score =  507 bits (1305), Expect = e-144
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60
           MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG
Sbjct: 1   MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60

Query: 61  GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120
           GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL
Sbjct: 61  GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120

Query: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180
           VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG
Sbjct: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180

Query: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240
           QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED
Sbjct: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240

Query: 241 RLWLQR 246
           RLWLQR
Sbjct: 241 RLWLQR 246


>gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo
           sapiens]
          Length = 246

 Score =  507 bits (1305), Expect = e-144
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60
           MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG
Sbjct: 1   MAAAREPALGHEGREEGSSQQKEDHLALVVEKSWIIRGGVGGHEDTMHHRTNVQCVGQDG 60

Query: 61  GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120
           GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL
Sbjct: 61  GHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKL 120

Query: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180
           VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG
Sbjct: 121 VHGHPHIVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEG 180

Query: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240
           QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED
Sbjct: 181 QPQQQYQGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHRED 240

Query: 241 RLWLQR 246
           RLWLQR
Sbjct: 241 RLWLQR 246


>gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo
           sapiens]
          Length = 368

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 27/165 (16%)

Query: 81  GANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRL 140
           G++  +PGE    GQ     LG    L ++V++ QG      G P      +   P LRL
Sbjct: 41  GSDYDRPGEPAVLGQLEQAALGQQA-LGAVVDILQGA-----GGP------DQRGPRLRL 88

Query: 141 G------LQEVSQGTEGEVGERGKDNDEEG----QGVWVS-PEVHGLHKEGQPQQQYQGR 189
           G      LQ+ +   EGE GE G  +D+ G    QG  V    +H   +  Q   ++   
Sbjct: 89  GGSGTRQLQQAAATREGEEGEAGGLSDQPGVMRTQGRTVGVAALHARVRASQRAGRHPVE 148

Query: 190 QQVGPDIHGLVVLLEQRAEIEAPGLMQ--RPVARIDVRLPEERRH 232
            ++GP      V  EQRA   APG +   RP      R P  RRH
Sbjct: 149 AELGPAQR--AVQQEQRARARAPGRVPGGRPRLLQQSRPPLPRRH 191


>gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
           +GPD+  LVV L++  E+ AP + +  VA  DVRLPEE  H+
Sbjct: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42


>gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
           +GPD+  LVV L++  E+ AP + +  VA  DVRLPEE  H+
Sbjct: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42


>gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
           +GPD+  LVV L++  E+ AP + +  VA  DVRLPEE  H+
Sbjct: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42


>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
          Length = 325

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)

Query: 94  GQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG------LQEVSQ 147
           GQ     LG    L ++V++ QG      G P      E   P LRLG      LQ+ + 
Sbjct: 11  GQLEQAALGQQA-LGAVVDILQGA-----GGP------EQRGPRLRLGGSGTRQLQQAAA 58

Query: 148 GTEGEVGERGKDNDEEG----QGVWVS-PEVHGLHKEGQPQQQYQGRQQVGPDIHGLVVL 202
             EGE GE G  +D+ G    QG  V    +H   +  Q   ++    ++GP      V 
Sbjct: 59  TREGEEGEAGGLSDQPGVMRTQGRTVGVAALHARFRASQRAGRHPVEAELGPAQR--AVQ 116

Query: 203 LEQRAEIEAPGLMQ--RPVARIDVRLPEERRH 232
            EQRA   APG +   RP      R P  RRH
Sbjct: 117 QEQRARARAPGRVPGGRPRLLQQSRPPLPRRH 148


>gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo
           sapiens]
          Length = 325

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 47/152 (30%), Positives = 63/152 (41%), Gaps = 27/152 (17%)

Query: 94  GQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG------LQEVSQ 147
           GQ     LG    L ++V++ QG      G P      +   P LRLG      LQ+ + 
Sbjct: 11  GQLEQAALGQQA-LGAVVDILQGA-----GGP------DQRGPRLRLGGSGTRQLQQAAA 58

Query: 148 GTEGEVGERGKDNDEEG----QGVWVS-PEVHGLHKEGQPQQQYQGRQQVGPDIHGLVVL 202
             EGE GE G  +D+ G    QG  V    +H   +  Q   ++    ++GP      V 
Sbjct: 59  TREGEEGEAGGLSDQPGVMRTQGRTVGVAALHARVRASQRAGRHPVEAELGPAQR--AVQ 116

Query: 203 LEQRAEIEAPGLMQ--RPVARIDVRLPEERRH 232
            EQRA   APG +   RP      R P  RRH
Sbjct: 117 QEQRARARAPGRVPGGRPRLLQQSRPPLPRRH 148


>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
           Q ++   PE+   L++     EG+   +GK  DEE       PE  G  KEG+ +++ + 
Sbjct: 23  QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82

Query: 189 RQQVGPDIHG 198
             + G +  G
Sbjct: 83  EMEGGSEREG 92


>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
           Q ++   PE+   L++     EG+   +GK  DEE       PE  G  KEG+ +++ + 
Sbjct: 23  QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82

Query: 189 RQQVGPDIHG 198
             + G +  G
Sbjct: 83  EMEGGSEREG 92


>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
           Q ++   PE+   L++     EG+   +GK  DEE       PE  G  KEG+ +++ + 
Sbjct: 23  QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82

Query: 189 RQQVGPDIHG 198
             + G +  G
Sbjct: 83  EMEGGSEREG 92


>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 129 QEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQG 188
           Q ++   PE+   L++     EG+   +GK  DEE       PE  G  KEG+ +++ + 
Sbjct: 23  QPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGES 82

Query: 189 RQQVGPDIHG 198
             + G +  G
Sbjct: 83  EMEGGSEREG 92


>gi|46852174 kinesin family member 3A [Homo sapiens]
          Length = 699

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 23/115 (20%), Positives = 59/115 (51%), Gaps = 19/115 (16%)

Query: 127 IVQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQY 186
           ++++ +  + EL+  L+E  + +  ++    +D+DEEG+          + ++G+ +++ 
Sbjct: 359 LLRQFQKEIEELKKKLEEGEEISGSDISGSEEDDDEEGE----------VGEDGEKRKKR 408

Query: 187 QGRQQVGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHREDR 241
           +G+++V PD      ++E +A+I+     +R      + + EE R+ +    E R
Sbjct: 409 RGKKKVSPD-----KMIEMQAKIDE----ERKALETKLDMEEEERNKARAELEKR 454


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 85  GKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLGLQE 144
           G PGEKG HG   S     P G D  ++  +G   L  G P         M ++ +G  +
Sbjct: 900 GLPGEKGDHGFPGS---SGPRG-DPGLKGDKGDVGL-PGKP-------GSMDKVDMGSMK 947

Query: 145 VSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQGRQQVGPDIHG 198
             +G +GE G+ G   ++  +G   +P V G  K+GQ  Q  Q   +  P I G
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPG--KDGQAGQPGQPGPKGDPGISG 999



 Score = 28.1 bits (61), Expect = 7.3
 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 12/87 (13%)

Query: 85  GKPGEKGSHGQKNSLHLGMPG--GLDSIVEVCQGT--AKLVHGHPHIVQEEEAVMPELRL 140
           G PG  G  GQK    +G+PG  GL  +  +  GT   K   G P +  E  A+ P    
Sbjct: 720 GLPGNPGVQGQKGEPGVGLPGLKGLPGLPGI-PGTPGEKGSIGVPGVPGEHGAIGPP--- 775

Query: 141 GLQEVSQGTEGEVGERGKDNDEEGQGV 167
           GL    QG  GE G  G        GV
Sbjct: 776 GL----QGIRGEPGPPGLPGSVGSPGV 798


>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
           isoform 1 [Homo sapiens]
          Length = 1112

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 75  DVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQ--GTAKLVHGHPHIVQEEE 132
           DV V    +A   GE      K    + +P GLD    + +    ++     P  V  EE
Sbjct: 498 DVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEE 557

Query: 133 AVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQGRQQV 192
               E R      S+  E E+  R +   +E            +     PQ++YQ    V
Sbjct: 558 ----EQRRPKHRPSEADEEELARRREARKQEQAN-----NPFYIKSSPSPQKRYQDTPGV 608

Query: 193 GPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHREDR 241
               H  VV ++    ++ PGL   P++   V+L EERRH   + ++ R
Sbjct: 609 E---HIPVVQIDLSVPLKVPGL---PMSDQYVKLEEERRHRQKLEKDKR 651


>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
           isoform 2 [Homo sapiens]
          Length = 1153

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 75  DVLVIAGANAGKPGEKGSHGQKNSLHLGMPGGLDSIVEVCQ--GTAKLVHGHPHIVQEEE 132
           DV V    +A   GE      K    + +P GLD    + +    ++     P  V  EE
Sbjct: 589 DVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEE 648

Query: 133 AVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQGRQQV 192
               E R      S+  E E+  R +   +E            +     PQ++YQ    V
Sbjct: 649 ----EQRRPKHRPSEADEEELARRREARKQEQAN-----NPFYIKSSPSPQKRYQDTPGV 699

Query: 193 GPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHREDR 241
               H  VV ++    ++ PGL   P++   V+L EERRH   + ++ R
Sbjct: 700 E---HIPVVQIDLSVPLKVPGL---PMSDQYVKLEEERRHRQKLEKDKR 742


>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 37  RGGVG--GHEDTMHHRT---NVQCVGQDGGHLLACA---AQQAWFLDVLVIAGANA---G 85
           RG VG  G +D ++ R    N+   G   G + A A   +Q   F +  V  G +    G
Sbjct: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177

Query: 86  KPGEK----GSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG 141
             GEK    GS G    L L   G   +   VC    +L  G   +++      PEL L 
Sbjct: 178 VGGEKRQEAGSPGWNPGLGLARLGSYST---VCLAP-ELAFGLGGVLRVSGPATPELALR 233

Query: 142 LQEVSQGTEGEVGERGKDNDEEGQGVWVSP 171
            + V+  + G  G+RG +N EEG+ + + P
Sbjct: 234 SRAVTPPSLGGGGDRG-ENREEGRDLCLGP 262


>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 37  RGGVG--GHEDTMHHRT---NVQCVGQDGGHLLACA---AQQAWFLDVLVIAGANA---G 85
           RG VG  G +D ++ R    N+   G   G + A A   +Q   F +  V  G +    G
Sbjct: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177

Query: 86  KPGEK----GSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG 141
             GEK    GS G    L L   G   +   VC    +L  G   +++      PEL L 
Sbjct: 178 VGGEKRQEAGSPGWNPGLGLARLGSYST---VCLAP-ELAFGLGGVLRVSGPATPELALR 233

Query: 142 LQEVSQGTEGEVGERGKDNDEEGQGVWVSP 171
            + V+  + G  G+RG +N EEG+ + + P
Sbjct: 234 SRAVTPPSLGGGGDRG-ENREEGRDLCLGP 262


>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
           sapiens]
          Length = 461

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 37  RGGVG--GHEDTMHHRT---NVQCVGQDGGHLLACA---AQQAWFLDVLVIAGANA---G 85
           RG VG  G +D ++ R    N+   G   G + A A   +Q   F +  V  G +    G
Sbjct: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177

Query: 86  KPGEK----GSHGQKNSLHLGMPGGLDSIVEVCQGTAKLVHGHPHIVQEEEAVMPELRLG 141
             GEK    GS G    L L   G   +   VC    +L  G   +++      PEL L 
Sbjct: 178 VGGEKRQEAGSPGWNPGLGLARLGSYST---VCLAP-ELAFGLGGVLRVSGPATPELALR 233

Query: 142 LQEVSQGTEGEVGERGKDNDEEGQGVWVSP 171
            + V+  + G  G+RG +N EEG+ + + P
Sbjct: 234 SRAVTPPSLGGGGDRG-ENREEGRDLCLGP 262


>gi|94536846 synaptotagmin VIII [Homo sapiens]
          Length = 401

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 16/97 (16%)

Query: 156 RGKDNDEEGQGVW----------VSPEVHGLHKEGQPQQQYQGRQQVGPDI----HGLVV 201
           R K  D+E  G+           V P+V GL       QQ+ GR Q+  +       + V
Sbjct: 78  RKKPRDKESVGLGSARGTTTTHLVQPDVDGLESSPGDAQQW-GRLQLSLEFDFGSQEIRV 136

Query: 202 LLEQRAEIEAPGLMQRPVARIDVRLPEERRHLSSIHR 238
            L Q A++  PG    P AR+ V      RH + +HR
Sbjct: 137 GLRQAADLR-PGGTVDPYARVSVSTQAGHRHETKVHR 172


>gi|40254871 transmembrane protease, serine 11E [Homo sapiens]
          Length = 423

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 55  CVGQDGGHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSL 99
           C G  GG L++  A+  W+L  +V  G    KP + G + +  +L
Sbjct: 369 CQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTAL 413


>gi|153791781 transmembrane protease, serine 11E2 [Homo sapiens]
          Length = 423

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 55  CVGQDGGHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSL 99
           C G  GG L++  A+  W+L  +V  G    KP + G + +  +L
Sbjct: 369 CQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTAL 413


>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
           sapiens]
          Length = 425

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 60  GGHLLACAAQQAWFLDVLVIAGANAGKPGEKGSHGQKNSLHLGMP---GGLDSIV 111
           G  +L  AA  +  + V+V   ANAG+PG K    +KN    G     GGL  I+
Sbjct: 161 GAGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFIL 215


>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 30  VEKSWIIRGGVGGHEDTMHHRTNVQC-VGQDG----------GHLLACAAQQAWFLDVLV 78
           V  SW IRG      D  H    V   VG  G            +L  +A+ +W  + LV
Sbjct: 25  VRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADGKTWSRVATVLGHSARLSWDRNYLV 84

Query: 79  IAGANAGKPGEKGSHGQKNS-LHLGMPGGLDSIVEV 113
           I GA AG PG   + G+  + L +G   GL++ V V
Sbjct: 85  ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120


>gi|239752467 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 357

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 135 MPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVW-VSPEVHGLHKEGQPQQQYQGRQQVG 193
           M E   G+Q      E E   + +D   E + V  V P+V G  KEGQ  Q   G    G
Sbjct: 26  MLERTAGVQSKEAALEEEAVLKVEDIMAEVEVVVEVEPDV-GWQKEGQRAQPGPGPSTPG 84

Query: 194 PDIHGLVVLLEQRAEIEAPGLMQRP 218
           P +  L VL  +   + APG    P
Sbjct: 85  PSMDSLEVLHLEVGSVNAPGHRASP 109


>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 30  VEKSWIIRGGVGGHEDTMHHRTNVQC-VGQDG----------GHLLACAAQQAWFLDVLV 78
           V  SW IRG      D  H    V   VG  G            +L  +A+ +W  + LV
Sbjct: 25  VRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADGKTWSRVATVLGHSARLSWDRNYLV 84

Query: 79  IAGANAGKPGEKGSHGQKNS-LHLGMPGGLDSIVEV 113
           I GA AG PG   + G+  + L +G   GL++ V V
Sbjct: 85  ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120


>gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo
           sapiens]
          Length = 357

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 135 MPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVW-VSPEVHGLHKEGQPQQQYQGRQQVG 193
           M E   G+Q      E E   + +D   E + V  V P+V G  KEGQ  Q   G    G
Sbjct: 26  MLERTAGVQSKEAALEEEAVLKVEDIMAEVEVVVEVEPDV-GWQKEGQRAQPGPGPSTPG 84

Query: 194 PDIHGLVVLLEQRAEIEAPGLMQRP 218
           P +  L VL  +   + APG    P
Sbjct: 85  PSMDSLEVLHLEVGSVNAPGHRASP 109


>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 30  VEKSWIIRGGVGGHEDTMHHRTNVQC-VGQDG----------GHLLACAAQQAWFLDVLV 78
           V  SW IRG      D  H    V   VG  G            +L  +A+ +W  + LV
Sbjct: 25  VRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADGKTWSRVATVLGHSARLSWDRNYLV 84

Query: 79  IAGANAGKPGEKGSHGQKNS-LHLGMPGGLDSIVEV 113
           I GA AG PG   + G+  + L +G   GL++ V V
Sbjct: 85  ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120


>gi|44890068 zinc finger protein 262 [Homo sapiens]
          Length = 1548

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 128  VQEEEAVMPELRLGLQEVSQGTEGEVGERGKDNDEEGQGVWVSPEVHGLHKEGQPQQQYQ 187
            VQE ++ + +   G  E  Q  E +      D   +GQG+         H++G PQ + +
Sbjct: 1119 VQEADSELKQFSKG--ETEQDLEADFPSDSFDPLNKGQGIQARSRTRRRHRDGFPQPRRR 1176

Query: 188  GRQQ 191
            GR++
Sbjct: 1177 GRKK 1180


>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
           sapiens]
          Length = 333

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 18/65 (27%)

Query: 148 GTEGEVGERGKDNDEEGQGV------WVSPEVH------------GLHKEGQPQQQYQGR 189
           GT GE GERG D   E +G+        SP  H            GL  E  PQ Q   +
Sbjct: 68  GTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNK 127

Query: 190 QQVGP 194
             VGP
Sbjct: 128 GDVGP 132


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,290,154
Number of Sequences: 37866
Number of extensions: 572334
Number of successful extensions: 1821
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1608
Number of HSP's gapped (non-prelim): 281
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press