Guide to the Human Genome
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Name: LOC647163 Sequence: fasta or formatted (135aa) NCBI GI: 239748867
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {135aa} PREDICTED: hypothetical protein
alt mRNA {135aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         20           2
 C cysteine            0.0          0           0
 D aspartate           5.2          7           1
 E glutamate           5.9          8           3
 F phenylalanine       2.2          3           1
 G glycine            13.3         18           3
 H histidine           3.7          5           1
 I isoleucine          1.5          2           1
 K lysine              1.5          2           1
 L leucine             9.6         13           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline             9.6         13           1
 Q glutamine           4.4          6           1
 R arginine           10.4         14           1
 S serine              5.9          8           1
 T threonine           2.2          3           1
 V valine              8.1         11           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC647163             1.000   PREDICTED: hypothetical protein 
LOC647163             1.000   PREDICTED: hypothetical protein 
LOC100293502          0.065   PREDICTED: hypothetical protein 
LOC100289250          0.065   PREDICTED: hypothetical protein XP_002342089 
LOC100293818          0.057   PREDICTED: hypothetical protein 
LOC100290009          0.049   PREDICTED: hypothetical protein XP_002346608 
LOC100288104          0.049   PREDICTED: hypothetical protein XP_002342450 
SYN1                  0.036   synapsin I isoform Ia 
SYN1                  0.036   synapsin I isoform Ib 
ZNF497                0.032   zinc finger protein 497 
OBSCN                 0.028   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100292370          0.028   PREDICTED: hypothetical protein 
LOC100292909          0.028   PREDICTED: hypothetical protein 
MYO9B                 0.028   myosin IXB isoform 2 
MYO9B                 0.028   myosin IXB isoform 1 
LOC100290946          0.028   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.028   PREDICTED: hypothetical protein XP_002344246 
LOC100291774          0.028   PREDICTED: hypothetical protein XP_002346356 
LOC100290694          0.028   PREDICTED: hypothetical protein XP_002348213 
LOC100289421          0.028   PREDICTED: hypothetical protein XP_002343872 
ARID5A                0.028   AT rich interactive domain 5A 
ONECUT3               0.028   one cut homeobox 3 
PRAGMIN               0.024   pragmin 
FAM53A                0.024   dorsal neural-tube nuclear protein 
LOC147670             0.024   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.024   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.024   PREDICTED: hypothetical protein LOC147670 
PRR12                 0.024   proline rich 12 
LOC100292124          0.020   PREDICTED: hypothetical protein XP_002346387 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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