Guide to the Human Genome
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Name: LOC100289250 Sequence: fasta or formatted (246aa) NCBI GI: 239741092
Description:

PREDICTED: hypothetical protein XP_002342089

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         17           3
 C cysteine            1.2          3           1
 D aspartate           4.1         10           1
 E glutamate          11.0         27           3
 F phenylalanine       0.4          1           1
 G glycine            13.4         33           2
 H histidine           6.5         16           2
 I isoleucine          3.7          9           2
 K lysine              3.3          8           1
 L leucine             9.3         23           2
 M methionine          2.0          5           1
 N asparagine          1.6          4           1
 P proline             4.5         11           1
 Q glutamine           8.9         22           3
 R arginine            6.5         16           2
 S serine              4.1         10           2
 T threonine           1.6          4           1
 V valine              8.9         22           2
 W tryptophan          1.6          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342089 
LOC100293502          1.000   PREDICTED: hypothetical protein 
LOC100288822          0.039   PREDICTED: hypothetical protein XP_002343515 
LOC647163             0.033   PREDICTED: hypothetical protein 
LOC647163             0.033   PREDICTED: hypothetical protein 
LOC647163             0.033   PREDICTED: hypothetical protein 
LOC100293902          0.029   PREDICTED: similar to hCG1986016 
LOC100290409          0.025   PREDICTED: hypothetical protein XP_002347745 
TCEAL4                0.019   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL4                0.019   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL4                0.019   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL4                0.019   transcription elongation factor A (SII)-like 4 [Homo...
KIF3A                 0.017   kinesin family member 3A 
COL4A1                0.015   alpha 1 type IV collagen preproprotein 
AP3D1                 0.015   adaptor-related protein complex 3, delta 1 subunit ...
AP3D1                 0.015   adaptor-related protein complex 3, delta 1 subunit ...
LOC100292576          0.012   PREDICTED: hypothetical protein 
LOC100288860          0.012   PREDICTED: hypothetical protein 
LOC100288860          0.012   PREDICTED: hypothetical protein XP_002343712 
SYT8                  0.012   synaptotagmin VIII 
TMPRSS11E             0.012   transmembrane protease, serine 11E 
TMPRSS11E2            0.012   transmembrane protease, serine 11E2 
CACNG8                0.012   voltage-dependent calcium channel gamma-8 subunit [H...
LOC100127987          0.010   PREDICTED: hypothetical protein LOC100127987 
LOC100289265          0.010   PREDICTED: hypothetical protein 
LOC100127987          0.010   PREDICTED: hypothetical protein LOC100127987 
LOC100289265          0.010   PREDICTED: hypothetical protein XP_002344242 
LOC100127987          0.010   PREDICTED: hypothetical protein LOC100127987 
ZMYM4                 0.010   zinc finger protein 262 
C1QTNF9B              0.010   C1q and tumor necrosis factor related protein 9B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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